Guide to the Human Genome
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Name: PPFIA4 Sequence: fasta or formatted (701aa) NCBI GI: 55769554
Description:

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

Referenced in:

Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         54           2
 C cysteine            0.6          4           1
 D aspartate           5.7         40           2
 E glutamate           7.8         55           2
 F phenylalanine       1.9         13           1
 G glycine             6.7         47           2
 H histidine           3.4         24           2
 I isoleucine          3.1         22           1
 K lysine              5.6         39           3
 L leucine            11.1         78           2
 M methionine          3.4         24           2
 N asparagine          2.6         18           2
 P proline             5.7         40           3
 Q glutamine           3.9         27           1
 R arginine            7.6         53           2
 S serine             10.0         70           3
 T threonine           5.7         40           3
 V valine              4.4         31           2
 W tryptophan          1.7         12           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, receptor type, f polyp... 
PPFIA2                0.630   PTPRF interacting protein alpha 2 
PPFIA1                0.558   PTPRF interacting protein alpha 1 isoform b 
PPFIA1                0.558   PTPRF interacting protein alpha 1 isoform a 
PPFIA3                0.513   PTPRF interacting protein alpha 3 
KIAA1026              0.112   kazrin isoform E 
PPFIBP1               0.088   PTPRF interacting protein binding protein 1 isoform ...
PPFIBP2               0.081   PTPRF interacting protein, binding protein 2 (lipri...
BRD4                  0.012   bromodomain-containing protein 4 isoform long 
BRD4                  0.011   bromodomain-containing protein 4 isoform short 
PLEC1                 0.011   plectin 1 isoform 11 
PLEC1                 0.011   plectin 1 isoform 10 
PLEC1                 0.011   plectin 1 isoform 8 
PLEC1                 0.011   plectin 1 isoform 7 
PLEC1                 0.011   plectin 1 isoform 6 
PLEC1                 0.011   plectin 1 isoform 3 
PLEC1                 0.011   plectin 1 isoform 2 
PLEC1                 0.011   plectin 1 isoform 1 
MICAL3                0.010   microtubule associated monoxygenase, calponin and L...
C17orf28              0.009   hypothetical protein LOC283987 
EPB41L3               0.009   erythrocyte membrane protein band 4.1-like 3 
CCDC136               0.009   coiled-coil domain containing 136 
STAMBPL1              0.009   STAM binding protein-like 1 
GPATCH8               0.009   G patch domain containing 8 
MAP1B                 0.008   microtubule-associated protein 1B 
GRIP1                 0.007   glutamate receptor interacting protein 1 
WNK1                  0.007   WNK lysine deficient protein kinase 1 
PPL                   0.007   periplakin 
TFE3                  0.007   transcription factor E3 
EXO1                  0.007   exonuclease 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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