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Search of human proteins with 122937215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937215 prospero homeobox 2 [Homo sapiens]
(592 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937215 prospero homeobox 2 [Homo sapiens] 1219 0.0
gi|21359846 prospero homeobox 1 [Homo sapiens] 307 2e-83
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 41 0.003
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 41 0.003
gi|154689780 son of sevenless homolog 2 [Homo sapiens] 38 0.030
gi|91208420 bassoon protein [Homo sapiens] 38 0.030
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 37 0.051
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.067
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 36 0.11
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 35 0.15
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.15
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.15
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.15
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 35 0.15
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.19
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 35 0.19
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 35 0.19
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 35 0.19
gi|145199237 transcription elongation factor B polypeptide 3 bin... 35 0.19
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 35 0.25
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 35 0.25
gi|223941923 OTU domain containing 1 [Homo sapiens] 34 0.33
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.33
gi|149363674 hypothetical protein LOC25758 [Homo sapiens] 34 0.33
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 34 0.33
gi|11276067 snail 2 [Homo sapiens] 34 0.43
gi|239743879 PREDICTED: hypothetical protein XP_002342985 [Homo ... 34 0.43
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 34 0.43
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 34 0.43
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 33 0.56
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 1219 bits (3153), Expect = 0.0
Identities = 592/592 (100%), Positives = 592/592 (100%)
Query: 1 MDPNSILLSPQPQICSHLAEACTEGERSSSPPELDRDSPFPWSQVPSSSPTDPEWFGDEH 60
MDPNSILLSPQPQICSHLAEACTEGERSSSPPELDRDSPFPWSQVPSSSPTDPEWFGDEH
Sbjct: 1 MDPNSILLSPQPQICSHLAEACTEGERSSSPPELDRDSPFPWSQVPSSSPTDPEWFGDEH 60
Query: 61 IQAKRARVETIVRGMCLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPA 120
IQAKRARVETIVRGMCLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPA
Sbjct: 61 IQAKRARVETIVRGMCLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPA 120
Query: 121 WDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNG 180
WDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNG
Sbjct: 121 WDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNG 180
Query: 181 CGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDS 240
CGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDS
Sbjct: 181 CGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDS 240
Query: 241 VLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPV 300
VLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPV
Sbjct: 241 VLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPV 300
Query: 301 GNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWS 360
GNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWS
Sbjct: 301 GNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWS 360
Query: 361 SSPPQDSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSAHLESLPLLPSVKMEQR 420
SSPPQDSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSAHLESLPLLPSVKMEQR
Sbjct: 361 SSPPQDSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSAHLESLPLLPSVKMEQR 420
Query: 421 GLHAVMEALPFSLLHIQEGLNPGHLKKAKLMFFFTRYPSSNLLKVYFPDVQFNRCITSQM 480
GLHAVMEALPFSLLHIQEGLNPGHLKKAKLMFFFTRYPSSNLLKVYFPDVQFNRCITSQM
Sbjct: 421 GLHAVMEALPFSLLHIQEGLNPGHLKKAKLMFFFTRYPSSNLLKVYFPDVQFNRCITSQM 480
Query: 481 IKWFSNFREFYYIQMEKSARQAISDGVTNPKMLVVLRNSELFQALNMHYNKGNDFEVPDC 540
IKWFSNFREFYYIQMEKSARQAISDGVTNPKMLVVLRNSELFQALNMHYNKGNDFEVPDC
Sbjct: 481 IKWFSNFREFYYIQMEKSARQAISDGVTNPKMLVVLRNSELFQALNMHYNKGNDFEVPDC 540
Query: 541 FLEIASLTLQEFFRAVSAGRDSDPSWKKPIYKIISKLDSDIPEIFKSSSYPQ 592
FLEIASLTLQEFFRAVSAGRDSDPSWKKPIYKIISKLDSDIPEIFKSSSYPQ
Sbjct: 541 FLEIASLTLQEFFRAVSAGRDSDPSWKKPIYKIISKLDSDIPEIFKSSSYPQ 592
>gi|21359846 prospero homeobox 1 [Homo sapiens]
Length = 737
Score = 307 bits (787), Expect = 2e-83
Identities = 228/623 (36%), Positives = 310/623 (49%), Gaps = 71/623 (11%)
Query: 17 HLAEACTEGERSSSPPELDRDSPFPWSQVPSSSPTDPEWFGDEHIQAKRARVETIVRGMC 76
H + C+ R S P L SPF P+ S D + DEH++AKRARVE I+RGM
Sbjct: 124 HQEDICSNSSRDSPPECL---SPFGR---PTMSQFDMDRLCDEHLRAKRARVENIIRGMS 177
Query: 77 LSPNPLVPGN------AQAGVSPRCPKKARERKRKQNLPTPQ--GLLMPAPAWDQGNRKG 128
SP+ + GN A VSPR + RE KRKQ LP Q A + R+
Sbjct: 178 HSPSVALRGNENEREMAPQSVSPR--ESYRENKRKQKLPQQQQQSFQQLVSARKEQKREE 235
Query: 129 GPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGP----LSAKQGNGCG-- 182
++++QL +++QLR LQE Q D+ G + L A+ + G
Sbjct: 236 RRQLKQQLEDMQKQLRQLQEKFYQIYDSTDSENDEDGNLSEDSMRSEILDARAQDSVGRS 295
Query: 183 -------------PRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKE 229
R + + + +K + P+ L E L++E
Sbjct: 296 DNEMCELDPGQFIDRARALIREQEMAENKPKREGNNKERDHGPNSLQPEGKHLAETLKQE 355
Query: 230 LTRAVSQAVDSVLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALP 289
L A+SQ VD+V++ P + Q+ Q + + R V G +
Sbjct: 356 LNTAMSQVVDTVVKVFSAKPSRQVPQVFPPLQ--IPQARFA----VNGENHN---FHTAN 406
Query: 290 RRVQLQAGVPV-------GNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQE 342
+R+Q V + GN+ +A D P + K D A+ P H
Sbjct: 407 QRLQCFGDVIIPNPLDTFGNVQMASSTDQTE--ALPLVVRKNSSDQSASGPAAGGHHQPL 464
Query: 343 NQI-LSQLLGHRYNNGHWSSSPPQDSSSQRHPSSEPA--LRPWRTTKPQPLVLSQQQCPL 399
+Q LS G + P + + P P+ P+ L L++ L
Sbjct: 465 HQSPLSATTGFTTSTFRHPFPLPLMAYPFQSPLGAPSGSFSGKDRASPESLDLTRDTTSL 524
Query: 400 --PFTSAHLESLPLLPS-------------VKMEQRGLHAVMEALPFSLLHIQEGLNPGH 444
+S HL P P+ +K E L + E P+S +QEGL+P H
Sbjct: 525 RTKMSSHHLSHHPCSPAHPPSTAEGLSLSLIKSECGDLQDMSEISPYSGSAMQEGLSPNH 584
Query: 445 LKKAKLMFFFTRYPSSNLLKVYFPDVQFNRCITSQMIKWFSNFREFYYIQMEKSARQAIS 504
LKKAKLMFF+TRYPSSN+LK YF DV+FNRCITSQ+IKWFSNFREFYYIQMEK ARQAI+
Sbjct: 585 LKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQMEKYARQAIN 644
Query: 505 DGVTNPKMLVVLRNSELFQALNMHYNKGNDFEVPDCFLEIASLTLQEFFRAVSAGRDSDP 564
DGVT+ + L + R+ EL++ALNMHYNK NDFEVP+ FLE+A +TL+EFF A+ AG+D DP
Sbjct: 645 DGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLEVAQITLREFFNAIIAGKDVDP 704
Query: 565 SWKKPIYKIISKLDSDIPEIFKS 587
SWKK IYK+I KLDS++PEIFKS
Sbjct: 705 SWKKAIYKVICKLDSEVPEIFKS 727
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 41.2 bits (95), Expect = 0.003
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Query: 255 QLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLDSPRY 314
Q G + GQ ++ P+ + A+ L Q+ G ++ +P Y
Sbjct: 412 QQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 315 ----PIPPRMTPKPCQDPPANFPLTAPSHIQENQILS-QLLGHRYNNGHWSSSPP----- 364
P P + P Q PP+ P PS+ Q+ Q QL + S PP
Sbjct: 472 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSP 531
Query: 365 -----QDSSSQRHPSSEPALRPWRTTKPQ-PLVLSQQQCPLPFTSAHLESLPLLPSVKME 418
Q S++Q+HP S+P P+ + Q P Q Q P P T + + P S + +
Sbjct: 532 APYPSQQSTTQQHPQSQP---PYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQ 588
Query: 419 Q 419
Q
Sbjct: 589 Q 589
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 41.2 bits (95), Expect = 0.003
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Query: 255 QLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLDSPRY 314
Q G + GQ ++ P+ + A+ L Q+ G ++ +P Y
Sbjct: 412 QQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 315 ----PIPPRMTPKPCQDPPANFPLTAPSHIQENQILS-QLLGHRYNNGHWSSSPP----- 364
P P + P Q PP+ P PS+ Q+ Q QL + S PP
Sbjct: 472 NQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSP 531
Query: 365 -----QDSSSQRHPSSEPALRPWRTTKPQ-PLVLSQQQCPLPFTSAHLESLPLLPSVKME 418
Q S++Q+HP S+P P+ + Q P Q Q P P T + + P S + +
Sbjct: 532 APYPSQQSTTQQHPQSQP---PYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQ 588
Query: 419 Q 419
Q
Sbjct: 589 Q 589
>gi|154689780 son of sevenless homolog 2 [Homo sapiens]
Length = 1332
Score = 37.7 bits (86), Expect = 0.030
Identities = 41/169 (24%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 268 RSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLDSPRYPIPPRMTPKPCQD 327
+S+ PP + P P +V+ + VP G D P + PP P D
Sbjct: 1167 KSDDDPPAIPPRQPP------PPKVKPRVPVPTG------AFDGPLHSPPPPPPRDPLPD 1214
Query: 328 PPANFPLTAPSHIQENQILSQ--LLGHRYNNGHW----SSSPPQDSSSQRHPSSEPALRP 381
P PL P H Q LGH + + W S+ P S+ PS R
Sbjct: 1215 TPPPVPLRPPEHFINCPFNLQPPPLGHLHRDSDWLRDISTCPNSPSTPPSTPSPRVPRRC 1274
Query: 382 WRTTKPQPLVLSQQQCPLPFTSAHLESLPLLPSVKMEQRGLHAVMEALP 430
+ + Q + P+P LP LP ++ H + LP
Sbjct: 1275 YVLSSSQNNLAHPPAPPVPPRQNSSPHLPKLPPKTYKRELSHPPLYRLP 1323
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 37.7 bits (86), Expect = 0.030
Identities = 54/219 (24%), Positives = 78/219 (35%), Gaps = 36/219 (16%)
Query: 155 KPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSF 214
KP + GPG K A+ G G GP G GT+ G +HQ + K +
Sbjct: 398 KPLGSGPGPGPAPGAKTEPGARMGPGSGPGALPKTG----GTTSPKHGRAEHQAASKAAA 453
Query: 215 LPSGAP---ASLEILRKELTRAVSQAVD---------SVLQKVLLDPPGHLT-------- 254
P P A + + EL + V +P HL
Sbjct: 454 KPKTMPKERAICPLCQAELNVGSKSPANYNTCTTCRLQVCNLCGFNPTPHLVEKTEWLCL 513
Query: 255 --QLGRSFQGQVAEGRSEPSP----PVGGACKDPLALAALPRRVQLQAGVPVGNL-SLAK 307
Q R +G + E P P P GA + L ++ G P G L + A
Sbjct: 514 NCQTKRLLEGSLGEPTPLPPPTSQQPPVGAPHRASGTSPLKQKGPQGLGQPSGPLPAKAS 573
Query: 308 RLDSPRYPIPPRMTP--KPCQDPPANFPLTAPSHIQENQ 344
L + P+P + +P KP + A+ P PS +QE +
Sbjct: 574 PLSTKASPLPSKASPQAKPLR---ASEPSKTPSSVQEKK 609
Score = 30.8 bits (68), Expect = 3.7
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 88 QAGVSPRCPKKA--RERKRKQNLPT----------PQGLLMPAPAWDQGNRKGGPRVREQ 135
Q G+ + P++A + R ++Q+ PT P G P P+ G + GP EQ
Sbjct: 3782 QQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQ 3841
Query: 136 LHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPWVVDGDHQQG 195
+ K + Q+ A+P A GPG G G A+ G G D +
Sbjct: 3842 TNGSKGTAKAPQQGRAPQAQP---APGPGPAGVKAG---ARPGGTPGAPAGQPGADGESV 3895
Query: 196 TSKDLSGAEKHQ 207
SK L G Q
Sbjct: 3896 FSKILPGGAAEQ 3907
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 37.0 bits (84), Expect = 0.051
Identities = 95/405 (23%), Positives = 129/405 (31%), Gaps = 47/405 (11%)
Query: 27 RSSSPPELDRDSPFP----WSQVPSSSP------TDPEWFGDEHIQAKRARVETIVRGMC 76
R+S PP R P S P SSP T P G + ++ ET+ RG
Sbjct: 81 RTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAE--ETVARGKA 138
Query: 77 LSPNPLVPGNAQA-----GVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKGGPR 131
+A A G +P P A R R + T GL PAP+ GPR
Sbjct: 139 TEAPKRSALSAGARRDTSGPTPGTPSPAMAR-RSRAAGTEVGLPRPAPSARPRPPTEGPR 197
Query: 132 VREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPWVV-DG 190
+ + EH P + G G + P S + P G
Sbjct: 198 ---------KSVSSASEHSTTEPSPAARRRPSAGGGLQR-PASRSLSSSATPLSSPARSG 247
Query: 191 DHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDSVLQKVLLDPP 250
+GT + A H KP L + P + RK+ A+ S L P
Sbjct: 248 PSARGTPR----APAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT-----P 298
Query: 251 GHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLD 310
S + S P+ P A L L P+ L+
Sbjct: 299 SPSAPPSPSAPPSLQTLPSPPATPPSQATTS-LGSPTLQATHSFLPSPPLSPLATPPPQA 357
Query: 311 SPRYPIPP-RMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSS 369
P +PP + P P PP + PL PS N + LL +S P +
Sbjct: 358 PPALALPPLQAPPSPPASPPLS-PLATPSPQAPNALAVHLL-----QAPFSPPPSPPVQA 411
Query: 370 QRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSAHLESLPLLPS 414
P + P + P T P S PL + S P+ PS
Sbjct: 412 PFSPPASPPVSP-SATPPSQAPPSLAAPPLQVPPSPPASPPMSPS 455
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.6 bits (83), Expect = 0.067
Identities = 48/210 (22%), Positives = 72/210 (34%), Gaps = 29/210 (13%)
Query: 9 SPQPQICSHLAEACTEGERSSSPPELDRDSPFPWSQVPSSSPTDPEWFGDEHIQAKRARV 68
SP P++ A A + +PP ++SP P S PSS G + +R R
Sbjct: 340 SPSPRVRDKAAAA------APTPPARGKESPSPRS-APSSQGRGGRAAGGAGRRRRRRRR 392
Query: 69 ETIVRGMCLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKG 128
R +P + PR ++ R R + + G P P + G+ +G
Sbjct: 393 RRRSRSSASAPRRRGRRRPRPA-PPRGSSRSLSRARSSS-DSGSGRGAPGPGPEPGSERG 450
Query: 129 ----GPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPR 184
G R +E+ A+P T+ PG G GP GP
Sbjct: 451 HGGHGKRAKERP---------------PRARPASTSPSPGAHGRRGGPEGKSSSRSPGPH 495
Query: 185 PWVVDGDHQQGTSKDLSGAEK-HQESEKPS 213
P S+ S ++ H S PS
Sbjct: 496 PRSWSSSRSPSKSRSRSAEKRPHSPSRSPS 525
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 35.8 bits (81), Expect = 0.11
Identities = 68/280 (24%), Positives = 94/280 (33%), Gaps = 49/280 (17%)
Query: 105 KQNLPTPQGLLMPAPAWDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPG 164
++ LP P +L+PAPA Q + E + L + LQ PRD GP
Sbjct: 1366 RRALPVPVYMLVPAPAPAQEDDSCTDSA-EGTPVNFSSAASLSDETLQ-GPPRDQPGGPA 1423
Query: 165 GCGTGKG-PLSAKQGNGCGPRPWVV--DGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPA 221
G G P SA+Q G + + +G K+ +G E P P APA
Sbjct: 1424 GRQRPTGRPTSARQAMGHRHKAGGAGRSAEQSRGAGKNRAGL------ELPLGRPPSAPA 1477
Query: 222 SLEILRKELTRAVSQAVDSVLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKD 281
+ + TR D LQ + L P + F G S+ PP
Sbjct: 1478 DKDGSKPGRTRG-----DGALQSLCLTTP--TEEAVYCFYG----NDSDEEPPAAAPTPT 1526
Query: 282 PLALAALPRRVQLQAGVPVGNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQ 341
+A+PR + + R P P PPA T PS I
Sbjct: 1527 HRRTSAIPR-------------AFTRERPQGRKEAPAPSKAAPAAPPPAR---TQPSLIA 1570
Query: 342 ENQILSQLLGHRYNNGHWSSSPPQDSSSQRHPSSEPALRP 381
+ +S S S S+ PS PA+ P
Sbjct: 1571 DE-----------TPPCYSLSSSASSLSEPEPSEPPAVHP 1599
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 35.4 bits (80), Expect = 0.15
Identities = 48/189 (25%), Positives = 68/189 (35%), Gaps = 31/189 (16%)
Query: 247 LDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLA 306
L PP H + + Q +P PP + P PR V LQ P+ +
Sbjct: 958 LPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPP------PRPVHLQ---PMQFSTHI 1008
Query: 307 KRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSP--- 363
++ P+ PP P P Q PP P IQ + Y+ GH +P
Sbjct: 1009 QQPPPPQGQQPPH--PPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLREAPSPL 1066
Query: 364 ----PQDSSSQRHPSSEP----------ALRPWRTTKPQPLVLSQQQCPLPFTSAHLESL 409
PQ S Q P LR +PQPLV+ +++ S + S
Sbjct: 1067 MIHSPQMSQFQSLTHQSPPQQNVQPKKQELRAASVVQPQPLVVVKEE---KIHSPIIRSE 1123
Query: 410 PLLPSVKME 418
P PS++ E
Sbjct: 1124 PFSPSLRPE 1132
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.4 bits (80), Expect = 0.15
Identities = 50/198 (25%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 249 PPG-HLTQLGRSFQGQVAEGRSEPS--PPVGGACKDPLALAALPRRVQLQAGVPVGNLSL 305
PPG H Q G Q G +P PP + PL + +P +L
Sbjct: 297 PPGPHSLQAGPLLQHP---GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSAL 353
Query: 306 AKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQ 365
+ P+PP P PP P+ Q ++ L G + + + PP
Sbjct: 354 QSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPP 413
Query: 366 -----DSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSA------HLESLPLLPS 414
S S HP S P PL L Q PLP + A ++LP P
Sbjct: 414 ALKPLSSLSTHHPPS---------AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 463
Query: 415 VKMEQRGLHAVMEALPFS 432
GLH V PF+
Sbjct: 464 ASHPPTGLHQVAPQPPFA 481
Score = 30.4 bits (67), Expect = 4.8
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 269 SEPSPPVGGACKDPLA----LAALPRRVQLQAGV-------PVGNLSLAKRLDSPRYP-I 316
S PSP + D A L A P +Q GV P G L +P +
Sbjct: 160 SIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAV 219
Query: 317 PPRMTPKPCQDPPANFPLTAP---SHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHP 373
PP+ +P Q P TAP +HIQ+ L P HP
Sbjct: 220 PPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP-------------QRPPSPHPPPHP 266
Query: 374 SSEPALRPWRTTKPQPLVLSQQQCPL 399
S P L+P + QP S Q PL
Sbjct: 267 SPHPPLQPLTGSAGQPSAPSHAQPPL 292
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.4 bits (80), Expect = 0.15
Identities = 50/198 (25%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 249 PPG-HLTQLGRSFQGQVAEGRSEPS--PPVGGACKDPLALAALPRRVQLQAGVPVGNLSL 305
PPG H Q G Q G +P PP + PL + +P +L
Sbjct: 851 PPGPHSLQAGPLLQHP---GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSAL 907
Query: 306 AKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQ 365
+ P+PP P PP P+ Q ++ L G + + + PP
Sbjct: 908 QSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPP 967
Query: 366 -----DSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSA------HLESLPLLPS 414
S S HP S P PL L Q PLP + A ++LP P
Sbjct: 968 ALKPLSSLSTHHPPS---------AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 1017
Query: 415 VKMEQRGLHAVMEALPFS 432
GLH V PF+
Sbjct: 1018 ASHPPTGLHQVAPQPPFA 1035
Score = 30.4 bits (67), Expect = 4.8
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 269 SEPSPPVGGACKDPLA----LAALPRRVQLQAGV-------PVGNLSLAKRLDSPRYP-I 316
S PSP + D A L A P +Q GV P G L +P +
Sbjct: 714 SIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAV 773
Query: 317 PPRMTPKPCQDPPANFPLTAP---SHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHP 373
PP+ +P Q P TAP +HIQ+ L P HP
Sbjct: 774 PPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP-------------QRPPSPHPPPHP 820
Query: 374 SSEPALRPWRTTKPQPLVLSQQQCPL 399
S P L+P + QP S Q PL
Sbjct: 821 SPHPPLQPLTGSAGQPSAPSHAQPPL 846
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.4 bits (80), Expect = 0.15
Identities = 50/198 (25%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 249 PPG-HLTQLGRSFQGQVAEGRSEPS--PPVGGACKDPLALAALPRRVQLQAGVPVGNLSL 305
PPG H Q G Q G +P PP + PL + +P +L
Sbjct: 851 PPGPHSLQAGPLLQHP---GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSAL 907
Query: 306 AKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQ 365
+ P+PP P PP P+ Q ++ L G + + + PP
Sbjct: 908 QSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPP 967
Query: 366 -----DSSSQRHPSSEPALRPWRTTKPQPLVLSQQQCPLPFTSA------HLESLPLLPS 414
S S HP S P PL L Q PLP + A ++LP P
Sbjct: 968 ALKPLSSLSTHHPPS---------AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 1017
Query: 415 VKMEQRGLHAVMEALPFS 432
GLH V PF+
Sbjct: 1018 ASHPPTGLHQVAPQPPFA 1035
Score = 30.4 bits (67), Expect = 4.8
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 269 SEPSPPVGGACKDPLA----LAALPRRVQLQAGV-------PVGNLSLAKRLDSPRYP-I 316
S PSP + D A L A P +Q GV P G L +P +
Sbjct: 714 SIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAV 773
Query: 317 PPRMTPKPCQDPPANFPLTAP---SHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHP 373
PP+ +P Q P TAP +HIQ+ L P HP
Sbjct: 774 PPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP-------------QRPPSPHPPPHP 820
Query: 374 SSEPALRPWRTTKPQPLVLSQQQCPL 399
S P L+P + QP S Q PL
Sbjct: 821 SPHPPLQPLTGSAGQPSAPSHAQPPL 846
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 35.4 bits (80), Expect = 0.15
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 312 PRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSS-Q 370
P P PP+ P Q PPA S +Q+ Q H ++ SP Q SSS
Sbjct: 219 PLQPTPPQQPPPASQQPPA-----PTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPP 273
Query: 371 RHPSSEPAL-RPWRTTKPQPLVL 392
+ PS P P T P PL L
Sbjct: 274 QKPSQSPGHGLPSPLTPPNPLQL 296
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.0 bits (79), Expect = 0.19
Identities = 38/166 (22%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 162 GPGGCGTGKGPLSAKQGNGCGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPA 221
G GGCGTG SA P +S S + S S S + +
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASP---ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Query: 222 SLEILRKELTRAVSQAVDSVLQKVLLDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKD 281
S + + S + S D + ++ + P+P G
Sbjct: 2648 SSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS----------SDDEAAPAPTAG----- 2692
Query: 282 PLALAALPRRVQLQAGVPVGNL-SLAKRLDSPRYPIPPRMTPKPCQ 326
P A AALP + QAG + S K+ +P+ PP +P Q
Sbjct: 2693 PSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQ 2738
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 35.0 bits (79), Expect = 0.19
Identities = 45/162 (27%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 271 PSPPVGGACKDPLALAALPRR--VQLQAGVPVGNLSLAKRLDSPRYPIPPRMTPKPCQDP 328
PS P C P A LP +Q Q GVP + A P P PP+ +P P
Sbjct: 814 PSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPA-----PTAPGPPQPPLRPQSQP 868
Query: 329 PANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHPSSEPALRPWRTTKPQ 388
P PL H+ + S + + + P D Q PS P P T P
Sbjct: 869 PEG-PLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSP---TPPP 924
Query: 389 PLVLSQQQC----PLPFTSAHLES-LPLLPSVKMEQRGLHAV 425
L L + P P T + + P LP K H V
Sbjct: 925 TLHLVPEPAAPPPPPPRTFQMVTTPFPALPQPKALLERFHQV 966
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 35.0 bits (79), Expect = 0.19
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 310 DSPRYPIPPRMTPKPC---QDPPAN-----FPLTAPSHIQENQILSQLLGHRYNNGHWSS 361
D+P + PPR P+P QDPP P T H I +GHR
Sbjct: 1170 DAPSFSSPPRQAPEPSLFFQDPPGTSMESLAPSTDSLHGSPVLIPQVCIGHR-------- 1221
Query: 362 SPPQDSSSQRHPSSEPA 378
P+ SS RHP S+ A
Sbjct: 1222 DAPRASSPPRHPPSDLA 1238
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 35.0 bits (79), Expect = 0.19
Identities = 85/344 (24%), Positives = 121/344 (35%), Gaps = 49/344 (14%)
Query: 19 AEACTEGERSSSPPELD---RDSPFPWSQVPSSSPTDPEWFGDEHIQAKRARVETIVRGM 75
A + T R S+P L+ SP P S+V S+ + E +++ + I
Sbjct: 1003 ASSPTPPPRPSAPCTLNVCPASSPGPGSRVRSAEEKNGE--------GQQSTADIITSEP 1054
Query: 76 CLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKG------- 128
L P L P AG+ P NL P+ + AP +
Sbjct: 1055 DLPPGYLRP---MAGLGFSLPSDVHS----SNLEDPETMQTTAPGAQPEPTRTFLPGEPP 1107
Query: 129 --GPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPW 186
PR E+ LL Q+ AA P T +GP G PL Q C
Sbjct: 1108 PCSPRSLEEPGLLSGAREATQD---LAATPYPTERGPQGKAADPSPLEGLQELQCAAL-L 1163
Query: 187 VVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDSVLQKVL 246
G G + G + + S + + AS ++L + RA S L+
Sbjct: 1164 EAGGPEATGQAHSTQGGAREERSREEGEQGPSSGASSQVLEQ---RAGSPGA---LEDEG 1217
Query: 247 LDPPGHLTQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAG-VPVGNLSL 305
P +L GQ + SE GGA + ALP L A + +G+L
Sbjct: 1218 EQPAPEEDELEEDELGQQSMEDSEED--CGGAPDNSHPPRALPGLDALVAATINLGDLPS 1275
Query: 306 AKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQL 349
DSP P PP + PP+ PL S I +LS+L
Sbjct: 1276 ----DSPPDPQPPAAS-----GPPSTVPLPHSSGIHGIALLSEL 1310
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 35.0 bits (79), Expect = 0.19
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 81 PLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKGGPRVREQLHLLK 140
P P Q+ CPK+ + +K+K P PAP+ G +G + +++
Sbjct: 356 PASPAQVQSSQDGGCPKEGKPKKKKTGAP-------PAPSCKDG-AQGKDKTKDKGRGRP 407
Query: 141 QQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLS----AKQGNGCGPRPWVVDGDHQQGT 196
+ + QA+ PR A+ P GT K P S A G G RP G
Sbjct: 408 VEKPRADKKGPQASSPRRKAERPE--GTKKKPSSATPVATSGKGRPDRP-ARRPSPTSGD 464
Query: 197 SKDLSGAEKHQESEKPSFLPSGAPASLEILRK--ELTRAVSQAVDSVLQKVL 246
S+ +G + + P + AP+ + RK L SQ + ++ L
Sbjct: 465 SRPAAGRGPPRPLQLPDRKSTKAPSGKLVERKARSLDEGASQDAPKLKKRAL 516
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 34.7 bits (78), Expect = 0.25
Identities = 51/210 (24%), Positives = 70/210 (33%), Gaps = 52/210 (24%)
Query: 276 GGACKDPLALAALPRRVQLQAG---VPVGNLSLAKRLDSPRYPIPP-------------- 318
GG D +P++VQL+ G P+ + AK+ + P+ P
Sbjct: 171 GGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVF 230
Query: 319 RMTPKPCQDPPANFPLTAPSHIQENQILSQ----------LLGHRYNNGHWSSSPPQDSS 368
R P P +P A FP Q+ Q Q L + Y+ S PQD
Sbjct: 231 RQGPPP-PNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFG 289
Query: 369 SQR---------------------HPSSEPALRP--WRTTKPQPLVLSQQQCPLPFTSAH 405
Q +P P LR + + PQP L Q Q P P S
Sbjct: 290 LQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQP-ALPQVQIPFPRRSRR 348
Query: 406 LESLPLLPSVKMEQRGLHAVMEALPFSLLH 435
L +LP ++ G EA LH
Sbjct: 349 LSKEGILPPSALDGAGTQPGQEATGNLFLH 378
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 34.7 bits (78), Expect = 0.25
Identities = 51/210 (24%), Positives = 70/210 (33%), Gaps = 52/210 (24%)
Query: 276 GGACKDPLALAALPRRVQLQAG---VPVGNLSLAKRLDSPRYPIPP-------------- 318
GG D +P++VQL+ G P+ + AK+ + P+ P
Sbjct: 171 GGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVF 230
Query: 319 RMTPKPCQDPPANFPLTAPSHIQENQILSQ----------LLGHRYNNGHWSSSPPQDSS 368
R P P +P A FP Q+ Q Q L + Y+ S PQD
Sbjct: 231 RQGPPP-PNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFG 289
Query: 369 SQR---------------------HPSSEPALRP--WRTTKPQPLVLSQQQCPLPFTSAH 405
Q +P P LR + + PQP L Q Q P P S
Sbjct: 290 LQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQP-ALPQVQIPFPRRSRR 348
Query: 406 LESLPLLPSVKMEQRGLHAVMEALPFSLLH 435
L +LP ++ G EA LH
Sbjct: 349 LSKEGILPPSALDGAGTQPGQEATGNLFLH 378
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 34.3 bits (77), Expect = 0.33
Identities = 41/152 (26%), Positives = 51/152 (33%), Gaps = 23/152 (15%)
Query: 73 RGMCLSPNPLVPGNAQAGVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKGGPRV 132
RG CL P A +P P++ + L P P PA R+G R
Sbjct: 143 RGRCLLLAP-------APAAPVPPRRGSSAWLLEELLRPD---CPEPAGLDATREGPDRN 192
Query: 133 REQLHLLKQQLRHLQEH--ILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPWVVDG 190
L EH L AAK R A PG G GP + GPR W G
Sbjct: 193 FR-----------LSEHRQALAAAKHRGPAATPGSPDPGPGPWGEEHLAERGPRGWERGG 241
Query: 191 DHQQGTSKDLSGAEKHQESEKPSFLPSGAPAS 222
D D + + P+ AP+S
Sbjct: 242 DRCDAPGGDAARRPDPEAEAPPAGSIEAAPSS 273
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.3 bits (77), Expect = 0.33
Identities = 54/229 (23%), Positives = 79/229 (34%), Gaps = 35/229 (15%)
Query: 207 QESEKPSFLPSGAPASLEILRKELTRAVSQAVDSVLQKVLLDPPGHLTQLGRSFQGQVAE 266
Q S P+ P +P ++ L+ L+ S + + L +++ P E
Sbjct: 470 QTSLSPAVSPLSSPLTIHPLQA-LSSLASHSPQAPLSSLIMPP---------------LE 513
Query: 267 GRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLDSPRYPIPPRMTPKPCQ 326
+S +PP + + P A P L + P + + L +P PP P P Q
Sbjct: 514 TQSSLAPP---SLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQ 570
Query: 327 DPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHPSSEPALRPWRTTK 386
PP+ PLT P + I + +PP +S P L P T
Sbjct: 571 APPS--PLTTPPPETPSSIATPP----------PQAPPALASPPLQGLPSPPLSPLATPP 618
Query: 387 PQ---PLVLSQQQCPLPFTSAHLESLPLLPSVKMEQRGLHAVMEALPFS 432
PQ L L Q P P A PL L + PFS
Sbjct: 619 PQAPPXLALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPFS 666
Score = 33.1 bits (74), Expect = 0.74
Identities = 117/494 (23%), Positives = 156/494 (31%), Gaps = 85/494 (17%)
Query: 21 ACTEGERSSSPPELDRDSPFPWSQVP-SSSPTDPEWFGDEHIQAKRARVETIVRGMCLSP 79
A GER+ P SP P S +S T P G + ++ ET+ RG
Sbjct: 96 ASGRGERA---PPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAE--ETVARGKATEA 150
Query: 80 NPLVPGNAQA-----GVSPRCPKKARERKRKQNLPTPQGLLMPAPAWDQGNRKGGPRVRE 134
+A A G +P P A R R + T GL PAP+ GPR
Sbjct: 151 PKRSALSAGARRDTSGPTPGTPSPAMAR-RSRAAGTEVGLPRPAPSARPRPPTEGPR--- 206
Query: 135 QLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGCGPRPWVV-DGDHQ 193
+ + EH P + G G + P S + P G
Sbjct: 207 ------KSVSSASEHSTTEPSPAARRRPSAGGGLQR-PASRSLSSSATPLSSPARSGPSA 259
Query: 194 QGTSKDLSGAEKHQESEKPSFLPSGAPASLEILRKELTRAVSQAVDSVLQKVLLDPPGHL 253
+GT + A H KP L + P + RK+ A+ S L P G
Sbjct: 260 RGTPR----APAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP--SPSGT- 312
Query: 254 TQLGRSFQGQVAEGRSEPSPPVGGACKDPLALAALPRRVQLQAGVPVGNLS--------- 304
++ P PP A PL A LP L +P+ S
Sbjct: 313 --------------KARPVPPPDNAAT-PLP-ATLPPSPPLATPLPLAPPSPSAPPSLQT 356
Query: 305 LAKRLDSPRYPIPPRMTPKPCQDPPA---------NFPLTAPS--------HIQENQILS 347
L +P PP MT P Q PP+ LT+PS + Q +
Sbjct: 357 LPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATT 416
Query: 348 QLLGHRYNNGH--WSSSPPQDSSSQRHPS--------SEPALRPWRTTKPQPLVLSQQQC 397
L H + SP Q +S PS S P P PL S
Sbjct: 417 SLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPA 476
Query: 398 PLPFTSAHLESLPLLPSVKMEQRGLHAVMEALPFSLLHIQEGLNPGHLKKAKLMFFFTRY 457
P +S L PL + A + +L L Q L P L+ T
Sbjct: 477 VSPLSSP-LTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPAS--LTTP 533
Query: 458 PSSNLLKVYFPDVQ 471
P NL + P +Q
Sbjct: 534 PLENLPSLAPPPLQ 547
>gi|149363674 hypothetical protein LOC25758 [Homo sapiens]
Length = 1855
Score = 34.3 bits (77), Expect = 0.33
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 328 PPANFP------LTAPSHIQENQILSQLLGHRYNNGHWSSSPP-----QDSSSQRHPSSE 376
P AN P + P NQ G W+ S P + R+P S
Sbjct: 1722 PAANRPGFTGYFIPTPPSSYRNQAWMSYAGENELPSQWADSVPLPGYIEAYPRSRYPQSS 1781
Query: 377 PALRPWRTTKPQPLVLSQQQCPLPFTSAHLESL 409
P+ P + ++P L S +Q P P T+A +SL
Sbjct: 1782 PSRLPRQYSQPANLHPSLEQAPAPSTAASQQSL 1814
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 34.3 bits (77), Expect = 0.33
Identities = 46/167 (27%), Positives = 61/167 (36%), Gaps = 40/167 (23%)
Query: 162 GPGGCGTGKGPLSAKQGNGCGPRPWVVDGDHQQGTSKDLSGAEKHQESEKPSFLPSGAPA 221
G GG G G G +A + G GP P GA++ + +P P A A
Sbjct: 11 GGGGGGGGGGVGAAGEDPGPGPAP-------------PPEGAQEAAPAPRPPPEPDDAAA 57
Query: 222 SLEILRKELTRAVSQAVDSVLQKVLLDPPGHLTQLGRSFQGQVAEGRS------EPSPPV 275
+L + A+D L + L G + G + G A G + EP PP
Sbjct: 58 ALRL-----------ALDQ-LSALGLGGAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPD 105
Query: 276 GGACKDPLALAALPRRVQLQAGVPVGNLSLAKRLDSPRYPIPPRMTP 322
G P LA V G+L L SP P PPR +P
Sbjct: 106 GPEAGAPPTLAP---------AVAPGSLPLLDPNASPPPPPPPRPSP 143
>gi|11276067 snail 2 [Homo sapiens]
Length = 268
Score = 33.9 bits (76), Expect = 0.43
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 318 PRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHPSSE 376
P + P + AP H Q LS L G+ + G S PP D+SS+ H SE
Sbjct: 45 PEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSE 103
>gi|239743879 PREDICTED: hypothetical protein XP_002342985 [Homo
sapiens]
Length = 216
Score = 33.9 bits (76), Expect = 0.43
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 114 LLMPAPAWDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPL 173
L P P W + GP+V +Q+ + +L EH + ++ P PG T G L
Sbjct: 136 LCSPEPDWLPSS---GPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVHKPG--STCDGSL 190
Query: 174 SAKQGNGCGPRPWVVDGDHQQGTSKDLSG 202
+ C P+ D +H + S LSG
Sbjct: 191 KGRAYPSCVPKR---DPEHSREESHPLSG 216
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 315 PIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRH-- 372
P+PP P+P Q P P H +Q Q H+ H PPQ H
Sbjct: 585 PLPPPHQPQPQQPQQQPPPQHQPPHQPPHQPPPQ---HQPPPQHPPQHPPQHQHHHHHHH 641
Query: 373 ---------PSSEPALRPWRTTKPQPLVLSQQQCP 398
P S+P RP T S+ QCP
Sbjct: 642 LSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCP 676
Score = 30.4 bits (67), Expect = 4.8
Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 40/126 (31%)
Query: 317 PPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGHWSSSPPQDSSSQRHPSSE 376
PP P Q PP + P P H H +++ H S PP P S+
Sbjct: 611 PPHQPPPQHQPPPQHPPQHPPQH-----------QHHHHHHHLSVPPPP-----LMPMSQ 654
Query: 377 PALRPWRTTKPQPLVLSQQQCPLPFTSAH------------------------LESLPLL 412
P RP T S+ QCP H L LP+
Sbjct: 655 PQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQNVSKRPMQQMQPTAPRNSNLRELPIA 714
Query: 413 PSVKME 418
PS +E
Sbjct: 715 PSHVIE 720
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 299 PVGNLSLAKRLDSPRYPIPPRMTPKPCQDPPANFPLTAPSHIQENQILSQLLGHRYNNGH 358
P GN+S + P + PR TP+P A PL + HIQ+ S L ++
Sbjct: 186 PGGNVSSSMMAPGPNPELQPR-TPRPASQSDAMDPLLSGLHIQQQSHPSGSLAPPHH--- 241
Query: 359 WSSSPPQDSSSQRHPSSEPALRPWRTTKPQPLVLSQQQ 396
P + Q +P++ P L+ + + Q QQQ
Sbjct: 242 --PMQPVSVNRQMNPANFPQLQQQQQQQQQQQQQQQQQ 277
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 33.5 bits (75), Expect = 0.56
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 73 RGMCLSPNPLVPGNA--QAGVSPRCPKKARERKRKQNLPTPQGL 114
+ +C P P +P Q+ PR P A++ +R +LP PQG+
Sbjct: 364 KSLCFRPGPALPSTRARQSFPGPRQPNGAQDWRRADSLPRPQGI 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,568,029
Number of Sequences: 37866
Number of extensions: 1663304
Number of successful extensions: 7066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 6817
Number of HSP's gapped (non-prelim): 408
length of query: 592
length of database: 18,247,518
effective HSP length: 108
effective length of query: 484
effective length of database: 14,157,990
effective search space: 6852467160
effective search space used: 6852467160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.