Guide to the Human Genome
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Name: LOC100287553 Sequence: fasta or formatted (216aa) NCBI GI: 239743879
Description:

PREDICTED: hypothetical protein XP_002342985

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         15           2
 C cysteine            5.1         11           2
 D aspartate           4.2          9           1
 E glutamate           6.0         13           2
 F phenylalanine       3.7          8           2
 G glycine             9.7         21           2
 H histidine           2.8          6           1
 I isoleucine          1.4          3           1
 K lysine              3.2          7           1
 L leucine             8.3         18           2
 M methionine          0.9          2           1
 N asparagine          0.5          1           1
 P proline            12.5         27           2
 Q glutamine           6.9         15           2
 R arginine            4.6         10           2
 S serine             10.2         22           4
 T threonine           3.2          7           1
 V valine              6.9         15           2
 W tryptophan          2.3          5           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342985 
PROX2                 0.021   prospero homeobox 2 
LOC197350             0.016   PREDICTED: hypothetical protein LOC197350 
LOC100292612          0.016   PREDICTED: hypothetical protein 
LOC197350             0.014   PREDICTED: hypothetical protein LOC197350 
CRTC2                 0.014   CREB regulated transcription coactivator 2 
NIPBL                 0.014   delangin isoform B 
ADPRH                 0.011   ADP-ribosylarginine hydrolase 
LOC100292339          0.011   PREDICTED: hypothetical protein 
LOC100288937          0.011   PREDICTED: hypothetical protein XP_002343343 
LENG9                 0.011   leukocyte receptor cluster (LRC) member 9 
FOXD4L6               0.011   forkhead box D4-like 6 
FOXD4L3               0.011   forkhead box D4-like 3 
BOC                   0.011   brother of CDO 
ASXL2                 0.011   additional sex combs like 2 
EN2                   0.009   engrailed homeobox 2 
FAM131C               0.009   hypothetical protein LOC348487 
ZFP36                 0.009   zinc finger protein 36, C3H type, homolog 
TBC1D12               0.009   TBC1 domain family, member 12 
ZNF764                0.009   zinc finger protein 764 
ARFGAP1               0.007   ADP-ribosylation factor GTPase activating protein 1 ...
NFATC1                0.007   nuclear factor of activated T-cells, cytosolic compo...
BSN                   0.007   bassoon protein 
JPH1                  0.007   junctophilin 1 
AATK                  0.007   apoptosis-associated tyrosine kinase 
PDZD2                 0.007   PDZ domain containing 2 
FUT4                  0.007   fucosyltransferase 4 
LOC100288562          0.007   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          0.007   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          0.007   PREDICTED: hypothetical protein XP_002342901 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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