Guide to the Human Genome
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Name: PROX1 Sequence: fasta or formatted (737aa) NCBI GI: 21359846
Description:

prospero homeobox 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         49           2
 C cysteine            1.5         11           1
 D aspartate           5.4         40           1
 E glutamate           7.3         54           2
 F phenylalanine       4.6         34           2
 G glycine             4.6         34           2
 H histidine           2.8         21           2
 I isoleucine          3.5         26           2
 K lysine              5.7         42           2
 L leucine             7.9         58           2
 M methionine          3.1         23           2
 N asparagine          5.0         37           2
 P proline             6.2         46           2
 Q glutamine           6.9         51           5
 R arginine            6.6         49           3
 S serine             10.6         78           2
 T threonine           4.6         34           2
 V valine              4.3         32           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prospero homeobox 1 
PROX2                 0.194   prospero homeobox 2 
LOC100133758          0.019   PREDICTED: hypothetical protein, partial 
INCENP                0.015   inner centromere protein antigens 135/155kDa isofor...
LOC283685             0.015   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
TCHH                  0.015   trichohyalin 
PLEC1                 0.015   plectin 1 isoform 11 
PLEC1                 0.015   plectin 1 isoform 10 
PLEC1                 0.015   plectin 1 isoform 8 
PLEC1                 0.015   plectin 1 isoform 7 
PLEC1                 0.015   plectin 1 isoform 6 
PLEC1                 0.015   plectin 1 isoform 3 
PLEC1                 0.015   plectin 1 isoform 2 
PLEC1                 0.015   plectin 1 isoform 1 
LOC100286959          0.014   PREDICTED: hypothetical protein XP_002343921 
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
TNIK                  0.014   TRAF2 and NCK interacting kinase isoform 5 
INCENP                0.014   inner centromere protein antigens 135/155kDa isofor...
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100131202          0.014   PREDICTED: hypothetical protein 
TNIK                  0.014   TRAF2 and NCK interacting kinase isoform 6 
LOC645202             0.013   PREDICTED: hypothetical protein LOC645202 
DNMT1                 0.013   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
WDR87                 0.013   NYD-SP11 protein 
ZC3H13                0.012   zinc finger CCCH-type containing 13 
SLK                   0.012   serine/threonine kinase 2 
LOC651807             0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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