Guide to the Human Genome
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Name: C14orf43 Sequence: fasta or formatted (1045aa) NCBI GI: 44890062
Description:

hypothetical protein LOC91748

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt mRNA [1045aa] hypothetical protein LOC91748
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         83           3
 C cysteine            0.9          9           1
 D aspartate           2.8         29           1
 E glutamate           7.8         82           3
 F phenylalanine       2.7         28           2
 G glycine             7.0         73           5
 H histidine           2.3         24           2
 I isoleucine          2.9         30           2
 K lysine              5.7         60           4
 L leucine             8.2         86           3
 M methionine          1.5         16           2
 N asparagine          3.1         32           1
 P proline            12.1        126           4
 Q glutamine           8.5         89           8
 R arginine            6.7         70           5
 S serine              7.8         81           2
 T threonine           4.6         48           2
 V valine              5.2         54           2
 W tryptophan          0.7          7           1
 Y tyrosine            1.7         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91748 
C14orf43              1.000   hypothetical protein LOC91748 
TRERF1                0.145   transcriptional regulating factor 1 
ZNF541                0.119   zinc finger protein 541 
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
MED15                 0.018   mediator complex subunit 15 isoform a 
MED15                 0.018   mediator complex subunit 15 isoform b 
ATXN2                 0.016   ataxin 2 
NCOR1                 0.016   nuclear receptor co-repressor 1 
ATN1                  0.016   atrophin-1 
ATN1                  0.016   atrophin-1 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
RCOR1                 0.015   REST corepressor 1 
EP400                 0.015   E1A binding protein p400 
MIER3                 0.014   mesoderm induction early response 1, family member 3...
RERE                  0.014   atrophin-1 like protein isoform b 
RERE                  0.014   atrophin-1 like protein isoform a 
RERE                  0.014   atrophin-1 like protein isoform a 
RBM33                 0.014   RNA binding motif protein 33 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 1 
BSN                   0.014   bassoon protein 
ARID1A                0.013   AT rich interactive domain 1A isoform a 
ARID1A                0.013   AT rich interactive domain 1A isoform b 
RCOR3                 0.013   REST corepressor 3 isoform b 
PRB1                  0.013   proline-rich protein BstNI subfamily 1 isoform 1 pre...
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
RCOR3                 0.013   REST corepressor 3 isoform c 
RCOR3                 0.013   REST corepressor 3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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