Guide to the Human Genome
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Name: SNAI2 Sequence: fasta or formatted (268aa) NCBI GI: 11276067
Description:

snail 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         15           2
 C cysteine            5.2         14           2
 D aspartate           3.4          9           1
 E glutamate           4.9         13           3
 F phenylalanine       3.7         10           1
 G glycine             4.1         11           1
 H histidine           6.3         17           1
 I isoleucine          3.7         10           2
 K lysine              8.2         22           2
 L leucine             8.2         22           2
 M methionine          1.5          4           1
 N asparagine          3.0          8           1
 P proline             7.5         20           4
 Q glutamine           3.4          9           1
 R arginine            4.1         11           1
 S serine             14.2         38           3
 T threonine           5.2         14           2
 V valine              3.4          9           1
 W tryptophan          0.7          2           1
 Y tyrosine            3.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   snail 2 
SNAI1                 0.436   snail 1 homolog 
SNAI3                 0.425   snail homolog 3 
SCRT2                 0.287   scratch 2 protein 
SCRT1                 0.285   scratch 
ZNF782                0.192   zinc finger protein 782 
ZNF846                0.184   zinc finger protein 846 
ZNF44                 0.182   zinc finger protein 44 
ZSCAN5B               0.182   zinc finger and SCAN domain containing 5B 
ZNF709                0.182   zinc finger protein 709 isoform b 
ZNF709                0.182   zinc finger protein 709 isoform a 
ZNF778                0.180   zinc finger protein 778 
ZSCAN5A               0.180   zinc finger and SCAN domain containing 5A 
ZNF560                0.180   zinc finger protein 560 
ZNF121                0.179   zinc finger protein 121 
ZNF408                0.179   zinc finger protein 408 
ZNF700                0.177   zinc finger protein 700 
ZNF77                 0.177   zinc finger protein 77 
ZFP90                 0.175   zinc finger protein 90 
ZNF177                0.175   zinc finger protein 177 
ZNF18                 0.175   zinc finger protein 18 
ZNF699                0.175   zinc finger protein 699 
ZNF333                0.175   zinc finger protein 333 
ZNF91                 0.173   zinc finger protein 91 
ZNF559                0.173   zinc finger protein 559 
ZNF14                 0.171   zinc finger protein 14 
ZNF624                0.171   zinc finger protein 624 
ZNF490                0.171   zinc finger protein 490 
ZNF658                0.169   zinc finger protein 658 
ZNF266                0.169   zinc finger protein 266 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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