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Search of human proteins with 28212272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28212272 hypothetical protein LOC161424 [Homo sapiens]
(636 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28212272 hypothetical protein LOC161424 [Homo sapiens] 1253 0.0
gi|66932909 pumilio 1 isoform 1 [Homo sapiens] 39 0.019
gi|13491168 pumilio homolog 2 [Homo sapiens] 38 0.025
gi|13491166 pumilio 1 isoform 2 [Homo sapiens] 36 0.12
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 35 0.21
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 35 0.21
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 35 0.21
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 35 0.21
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 35 0.28
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 35 0.28
gi|21700763 hematological and neurological expressed 1-like [Hom... 35 0.28
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 34 0.36
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 34 0.47
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 34 0.47
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.47
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.61
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 33 1.0
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 33 1.0
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 33 1.0
gi|239756786 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|239751280 PREDICTED: hypothetical protein XP_002347784 [Homo ... 32 1.4
gi|239745775 PREDICTED: hypothetical protein XP_002343551 [Homo ... 32 1.4
gi|209862789 microtubule associated monoxygenase, calponin and L... 32 1.4
gi|24797153 faciogenital dysplasia protein [Homo sapiens] 32 1.8
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 32 1.8
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 1.8
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 1.8
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 1.8
gi|10864057 protamine 3 [Homo sapiens] 32 2.3
gi|18641360 collectin sub-family member 12 [Homo sapiens] 32 2.3
>gi|28212272 hypothetical protein LOC161424 [Homo sapiens]
Length = 636
Score = 1253 bits (3242), Expect = 0.0
Identities = 636/636 (100%), Positives = 636/636 (100%)
Query: 1 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE 60
MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE
Sbjct: 1 MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE 60
Query: 61 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK 120
ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK
Sbjct: 61 ALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLK 120
Query: 121 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE 180
PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE
Sbjct: 121 PLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLE 180
Query: 181 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ 240
ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ
Sbjct: 181 ELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQ 240
Query: 241 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC 300
ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC
Sbjct: 241 ECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLC 300
Query: 301 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA 360
NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA
Sbjct: 301 NAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLA 360
Query: 361 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA 420
AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA
Sbjct: 361 AHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQA 420
Query: 421 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG 480
KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG
Sbjct: 421 KVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALG 480
Query: 481 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL 540
DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL
Sbjct: 481 DVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKL 540
Query: 541 RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV 600
RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV
Sbjct: 541 RRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHV 600
Query: 601 ARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED 636
ARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED
Sbjct: 601 ARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED 636
>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
Length = 1188
Score = 38.5 bits (88), Expect = 0.019
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 272 ITDKISSFCLQVALQVLHRKLPQFCAHLCNAVIGYLSTRGSSVDGSPLLLFLRDQTSSRL 331
+ ++I L +ALQ+ ++ Q + ++ +DG +L ++DQ + +
Sbjct: 917 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH-VLKCVKDQNGNHV 975
Query: 332 LEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSP 391
+++ + ++P LQ + + +GQ+ L+ HP +QR+L+ P+ P+ EEL
Sbjct: 976 VQKCIECVQPQSLQFIIDA-FKGQVFALSTHPYGCRVIQRILEH-CLPDQTLPILEELHQ 1033
Query: 392 VLEAVLAQGHPGVVI 406
E ++ + VI
Sbjct: 1034 HTEQLVQDQYGNYVI 1048
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 486 GSLLLQHLLHF--STPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRR 543
G ++Q L F S ++ + L G +L + G+HV+ + V + +
Sbjct: 934 GCRVIQKALEFIPSDQQVINEMVRELDG-HVLKCVKDQNGNHVVQKCIEC--VQPQSLQF 990
Query: 544 VLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARN 603
++ KGQ AL+ +G RV+ I I EL + ++L++D +G++V ++
Sbjct: 991 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH 1050
Query: 604 V 604
V
Sbjct: 1051 V 1051
>gi|13491168 pumilio homolog 2 [Homo sapiens]
Length = 1064
Score = 38.1 bits (87), Expect = 0.025
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 319 LLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTT 378
+L ++DQ + ++++ + ++P LQ + + +GQ+ L+ HP +QR+L+ T
Sbjct: 839 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDA-FKGQVFVLSTHPYGCRVIQRILEHCTA 897
Query: 379 PELLSPVFEELSPVLEAVLAQGHPGVVI 406
+ L P+ EEL E ++ + VI
Sbjct: 898 EQTL-PILEELHQHTEQLVQDQYGNYVI 924
Score = 35.8 bits (81), Expect = 0.12
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 514 LLSLAQSPAGSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAA 573
+L + G+HV+ + V + + ++ KGQ L+ +G RV+ I
Sbjct: 839 VLKCVKDQNGNHVVQKCIEC--VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCT 896
Query: 574 LRARKEIAAELGEQNQELIRDPFGHHVARNV 604
I EL + ++L++D +G++V ++V
Sbjct: 897 AEQTLPILEELHQHTEQLVQDQYGNYVIQHV 927
Score = 30.0 bits (66), Expect = 6.8
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 523 GSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAA 582
G++V+ S+ +KL + ++G + LA +G RV+ + + E+
Sbjct: 776 GNYVIQKFFEFGSLDQKLA--LATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVK 833
Query: 583 ELGEQNQELIRDPFGHHVAR 602
EL + ++D G+HV +
Sbjct: 834 ELDGHVLKCVKDQNGNHVVQ 853
>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
Length = 1186
Score = 35.8 bits (81), Expect = 0.12
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 486 GSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRRVL 545
G ++Q L F + L G +L + G+HV+ + V + + ++
Sbjct: 934 GCRVIQKALEFIPSDQQNEMVRELDG-HVLKCVKDQNGNHVVQKCIEC--VQPQSLQFII 990
Query: 546 QNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNV 604
KGQ AL+ +G RV+ I I EL + ++L++D +G++V ++V
Sbjct: 991 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHV 1049
Score = 35.8 bits (81), Expect = 0.12
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 319 LLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTT 378
+L ++DQ + ++++ + ++P LQ + + +GQ+ L+ HP +QR+L+
Sbjct: 961 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDA-FKGQVFALSTHPYGCRVIQRILEH-CL 1018
Query: 379 PELLSPVFEELSPVLEAVLAQGHPGVVI 406
P+ P+ EEL E ++ + VI
Sbjct: 1019 PDQTLPILEELHQHTEQLVQDQYGNYVI 1046
Score = 30.0 bits (66), Expect = 6.8
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 523 GSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAA 582
G++V+ S+ +KL + + ++G ++LA +G RV+ + E+
Sbjct: 898 GNYVIQKFFEFGSLEQKLA--LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVR 955
Query: 583 ELGEQNQELIRDPFGHHVAR 602
EL + ++D G+HV +
Sbjct: 956 ELDGHVLKCVKDQNGNHVVQ 975
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 35.0 bits (79), Expect = 0.21
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 3 QGPRSPHKVGRRFPAGGKRGRGAKG------SGRPLPGRKRQPWPPPDGRSEP------- 49
+GPR P G + P+G A+G +G PGR+ P P G+ P
Sbjct: 137 EGPRGPRAGGAQGPSGPSELPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSI 196
Query: 50 -----APDSHPHLSPEALGYFRRALSALKEAPE 77
+PD P L P L R K +P+
Sbjct: 197 DYILSSPDPFPGLKPPCLAQEGRYPRLEKVSPQ 229
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 35.0 bits (79), Expect = 0.21
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 3 QGPRSPHKVGRRFPAGGKRGRGAKG------SGRPLPGRKRQPWPPPDGRSEP------- 49
+GPR P G + P+G A+G +G PGR+ P P G+ P
Sbjct: 432 EGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSI 491
Query: 50 -----APDSHPHLSPEAL 62
+PD P L P L
Sbjct: 492 DYILSSPDPFPGLKPPCL 509
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 35.0 bits (79), Expect = 0.21
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 3 QGPRSPHKVGRRFPAGGKRGRGAKG------SGRPLPGRKRQPWPPPDGRSEP------- 49
+GPR P G + P+G A+G +G PGR+ P P G+ P
Sbjct: 495 EGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSI 554
Query: 50 -----APDSHPHLSPEAL 62
+PD P L P L
Sbjct: 555 DYILSSPDPFPGLKPPCL 572
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 35.0 bits (79), Expect = 0.21
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 3 QGPRSPHKVGRRFPAGGKRGRGAKG------SGRPLPGRKRQPWPPPDGRSEP------- 49
+GPR P G + P+G A+G +G PGR+ P P G+ P
Sbjct: 199 EGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSI 258
Query: 50 -----APDSHPHLSPEAL 62
+PD P L P L
Sbjct: 259 DYILSSPDPFPGLKPPCL 276
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.28
Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 3 QGPRSPHKVGRRFPAGGK--RGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE 60
+G SP + G R G + GRP PG + P GR+ PAP + P P
Sbjct: 143 RGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTD---PPGRTLPAPLARPSTQPG 199
Query: 61 ALGYFRRALSAL----------KEAPETGEERDLMVHNIMKEVETQALALSTN-RTGSEM 109
RA S L A + G +R + + V L + R G+ +
Sbjct: 200 RRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAAL 259
Query: 110 LQELLGFSPLKPLCRVWAALRSNLRTVACHRCG 142
L G +P C W ++ A CG
Sbjct: 260 LATCRGNAPTPSACLTWLESKNKKNYDAGEACG 292
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.28
Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 3 QGPRSPHKVGRRFPAGGK--RGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPE 60
+G SP + G R G + GRP PG + P GR+ PAP + P P
Sbjct: 143 RGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTD---PPGRTLPAPLARPSTQPG 199
Query: 61 ALGYFRRALSAL----------KEAPETGEERDLMVHNIMKEVETQALALSTN-RTGSEM 109
RA S L A + G +R + + V L + R G+ +
Sbjct: 200 RRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAAL 259
Query: 110 LQELLGFSPLKPLCRVWAALRSNLRTVACHRCG 142
L G +P C W ++ A CG
Sbjct: 260 LATCRGNAPTPSACLTWLESKNKKNYDAGEACG 292
>gi|21700763 hematological and neurological expressed 1-like [Homo
sapiens]
Length = 190
Score = 34.7 bits (78), Expect = 0.28
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 2 GQGPRSPHKVGRRFPAGGKRGRGAKGSGRPL-PGRKRQPWPPPDG---RSEPAPDSH 54
G+ P+S K R PAG + G KGS R P ++++P P D R P P SH
Sbjct: 120 GEEPKSDLKAARSIPAGAEPGE--KGSARKAGPAKEQEPMPTVDSHEPRLGPRPRSH 174
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 34.3 bits (77), Expect = 0.36
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 1 MGQGPRSPHKVG----RRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPH 56
M +GP P +VG R P+G R G GR L R R + P R P P+
Sbjct: 148 MKRGP-PPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPY 206
Query: 57 LSPEALGYFRR 67
L P GY R
Sbjct: 207 LGPRDEGYSSR 217
>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
sapiens]
Length = 525
Score = 33.9 bits (76), Expect = 0.47
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 77 ETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLKPLCRVWAALRSNLRTV 136
+T E D + E E QAL +T + + RVWAA+R R+
Sbjct: 235 QTHPELDTDGDGALSEAEAQALLSGDTQTDATSFYD-----------RVWAAIRDKYRSE 283
Query: 137 ACHRC----GVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLEE 181
A L + P + S EEEEEEEE+ ++ E EE
Sbjct: 284 ALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEE 332
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 33.9 bits (76), Expect = 0.47
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 77 ETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLKPLCRVWAALRSNLRTV 136
+T E D + E E QAL +T + + RVWAA+R R+
Sbjct: 235 QTHPELDTDGDGALSEAEAQALLSGDTQTDATSFYD-----------RVWAAIRDKYRSE 283
Query: 137 ACHRC----GVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLEE 181
A L + P + S EEEEEEEE+ ++ E EE
Sbjct: 284 ALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEE 332
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.47
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 6 RSPHKVGRRFPAGGKRGRGAKG-SGRPLPGR-KRQPWPPPDGRSEPAPDSHPHL-----S 58
R P G+ +G G G G GR PGR ++ WP P RS P + P L
Sbjct: 1397 RRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPP 1456
Query: 59 PEALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGS 107
P + FR D ++H+ ++ QALA ++R GS
Sbjct: 1457 PSSSAVFR---------------LDQVIHSNPAGIQ-QALAQLSSRQGS 1489
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.5 bits (75), Expect = 0.61
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 4 GPRS-PHKVGRRFPAG--GKRGRGAKGSGRPLPGRKRQPWP--PPDGR---SEPAPDSHP 55
GPR P + G R P G G G+ G G LPGRK P P PP R +P P P
Sbjct: 1332 GPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPP 1391
Query: 56 HLSPEAL 62
L A+
Sbjct: 1392 GLPGTAM 1398
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 2 GQGPRSPHKVGRRF--PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDS 53
G GP PH GRR P GG R +G R P P PPP P DS
Sbjct: 199 GYGPPPPHYEGRRMGPPVGGHR----RGPSRYGPQYGHPPPPPPPPEYGPHADS 248
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 2 GQGPRSPHKVGRRF--PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDS 53
G GP PH GRR P GG R +G R P P PPP P DS
Sbjct: 332 GYGPPPPHYEGRRMGPPVGGHR----RGPSRYGPQYGHPPPPPPPPEYGPHADS 381
>gi|165905613 ring finger and KH domain containing 1 [Homo
sapiens]
Length = 651
Score = 32.7 bits (73), Expect = 1.0
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 18 GGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSP-EALGYFRRALSALKE-- 74
GG G GA G P PG P PPP+G E AP P P +A R AL L
Sbjct: 16 GGGGGVGAAGED-PGPG----PAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALG 70
Query: 75 ---APETGEE 81
A +T EE
Sbjct: 71 LGGAGDTDEE 80
>gi|239756786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 16 PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEP 49
PA G RG+G++ + P R QP PPP P
Sbjct: 6 PADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRP 39
>gi|239751280 PREDICTED: hypothetical protein XP_002347784 [Homo
sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 16 PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEP 49
PA G RG+G++ + P R QP PPP P
Sbjct: 6 PADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRP 39
>gi|239745775 PREDICTED: hypothetical protein XP_002343551 [Homo
sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 16 PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEP 49
PA G RG+G++ + P R QP PPP P
Sbjct: 6 PADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRP 39
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 32.3 bits (72), Expect = 1.4
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 44/199 (22%)
Query: 2 GQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPEA 61
G+ + P + G A G+ A + +R P +G EP+ +PE
Sbjct: 838 GKEAKGPLQDGATTDANGRANAVASST-------ERTPGSGVNGLEEPSIAKRLRGTPER 890
Query: 62 LGYFRRALS-----ALKEAPETGEERDLMVHNIMKEVETQALA-LSTNRTGSEMLQEL-- 113
+ LS AL+E PE + HN+ ++T A ++++ + SEM +E
Sbjct: 891 IELENYRLSLRQAEALQEVPEETQAE----HNLSSVLDTGAEEDVASSSSESEMEEEGEE 946
Query: 114 -----------LGFSPLKPLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAE 162
LG P K R+ A L+ L+ + G E
Sbjct: 947 EEEEPRLPPSDLGGVPWKEAVRIHALLKGK--------------SEEELEASKSFGPGNE 992
Query: 163 EEEEEEEDGKDGPTETLEE 181
EEEEEEE+ ++ E +E
Sbjct: 993 EEEEEEEEYEEEEEEDYDE 1011
>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
Length = 961
Score = 32.0 bits (71), Expect = 1.8
Identities = 55/213 (25%), Positives = 77/213 (36%), Gaps = 44/213 (20%)
Query: 28 SGRPLPGRKRQPWP-PPDGRSEPAPDSHPHLSPEALGYFRRALSALKEAPETGEE---RD 83
S RP+PG P P PP+ P P S P + G R L L P GE+ RD
Sbjct: 227 SDRPVPG----PSPGPPEPVMLPQPTSQPPVPQLPEGEASRCLFLLAPGPRDGEKVPNRD 282
Query: 84 LMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLKPLCRVWAALRSNLRTVA-CHRCG 142
+ +I ++ ++ P LC AL S +A HR G
Sbjct: 283 SGIDSISSPSNSEETCFVSD-----------DGPPSHSLCPGPPALASVPVALADPHRPG 331
Query: 143 VHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTE----------TLEELVLGLAAEVCD 192
+ S L ++EEEEEE ++ P T+++ V +A E+
Sbjct: 332 SQEVDSDL--------EEEDDEEEEEEKDREIPVPLMERQESVELTVQQKVFHIANELLQ 383
Query: 193 DFLVYCGDTHGSFVVRTLLQVLGGTILESERAR 225
Y H L QV +LE R R
Sbjct: 384 TEKAYVSRLH------LLDQVFCARLLEEARNR 410
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 32.0 bits (71), Expect = 1.8
Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 6 RSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAP---DSHPHLSPEAL 62
R+P R P R A+GSG L P P P + P L PEA+
Sbjct: 1448 RAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAV 1507
Query: 63 -GYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQE 112
G R L L+ A ERD E+ TQ AL NR +EM E
Sbjct: 1508 RGALREFLQELRSAQ---RERD--------ELRTQTSAL--NRQLAEMEAE 1545
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 4 GPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPEALG 63
G SP VG P G + R S +PG + P PP S+ SHP LS +
Sbjct: 675 GGPSPSPVGS--PVGSNQSRSGPISPASIPGSQMPPQPP---GSQSESSSHPALSQSPMP 729
Query: 64 YFRRALSALKEAPETGE 80
R ++ + P+ +
Sbjct: 730 QERGFMAGTQRNPQMAQ 746
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 4 GPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPEALG 63
G SP VG P G + R S +PG + P PP S+ SHP LS +
Sbjct: 662 GGPSPSPVGS--PVGSNQSRSGPISPASIPGSQMPPQPP---GSQSESSSHPALSQSPMP 716
Query: 64 YFRRALSALKEAPETGE 80
R ++ + P+ +
Sbjct: 717 QERGFMAGTQRNPQMAQ 733
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 4 GPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPEALG 63
G SP VG P G + R S +PG + P PP S+ SHP LS +
Sbjct: 662 GGPSPSPVGS--PVGSNQSRSGPISPASIPGSQMPPQPP---GSQSESSSHPALSQSPMP 716
Query: 64 YFRRALSALKEAPETGE 80
R ++ + P+ +
Sbjct: 717 QERGFMAGTQRNPQMAQ 733
>gi|10864057 protamine 3 [Homo sapiens]
Length = 103
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 139 HRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETL 179
H + L + + Q L SA EEEEEEEE+G++ E L
Sbjct: 28 HESSMKKLMACVSQDNFSLSSAGEEEEEEEEEGEEEEKEEL 68
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 4 GPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRS-EPAPDSHP 55
G R P +G P G + G+G+KGS P R P P G S +P P P
Sbjct: 482 GERGP--IGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPP 532
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,128,217
Number of Sequences: 37866
Number of extensions: 1329411
Number of successful extensions: 10706
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 10453
Number of HSP's gapped (non-prelim): 350
length of query: 636
length of database: 18,247,518
effective HSP length: 109
effective length of query: 527
effective length of database: 14,120,124
effective search space: 7441305348
effective search space used: 7441305348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.