Guide to the Human Genome
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Name: PRM3 Sequence: fasta or formatted (103aa) NCBI GI: 10864057
Description:

protamine 3

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          5           1
 C cysteine            1.9          2           1
 D aspartate           1.9          2           1
 E glutamate          21.4         22           9
 F phenylalanine       1.0          1           1
 G glycine            10.7         11           1
 H histidine           3.9          4           1
 I isoleucine          0.0          0           0
 K lysine              6.8          7           2
 L leucine             7.8          8           4
 M methionine          2.9          3           1
 N asparagine          2.9          3           1
 P proline             6.8          7           1
 Q glutamine           7.8          8           2
 R arginine            2.9          3           1
 S serine             11.7         12           2
 T threonine           2.9          3           1
 V valine              1.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protamine 3 
ZMYND15               0.112   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.112   zinc finger, MYND-type containing 15 isoform 2 [Homo...
RANGAP1               0.091   Ran GTPase activating protein 1 
CENPB                 0.086   centromere protein B 
MYST4                 0.086   MYST histone acetyltransferase (monocytic leukemia)...
RYR1                  0.080   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.080   skeletal muscle ryanodine receptor isoform 1 
MYT1                  0.080   myelin transcription factor 1 
SLC24A1               0.080   solute carrier family 24 (sodium/potassium/calcium ex...
PRDM2                 0.080   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.080   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.080   retinoblastoma protein-binding zinc finger protein i...
CLSTN1                0.080   calsyntenin 1 isoform 1 
CLSTN1                0.080   calsyntenin 1 isoform 2 
GTF3C3                0.080   general transcription factor IIIC, polypeptide 3, 102...
ATRX                  0.080   transcriptional regulator ATRX isoform 2 
ATRX                  0.080   transcriptional regulator ATRX isoform 1 
WDR87                 0.075   NYD-SP11 protein 
TTBK1                 0.075   tau tubulin kinase 1 
MYST3                 0.075   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.075   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.075   MYST histone acetyltransferase (monocytic leukemia)...
RRP9                  0.075   RNA, U3 small nucleolar interacting protein 2 
LOC728792             0.075   PREDICTED: hypothetical protein 
PELP1                 0.075   proline, glutamic acid and leucine rich protein 1 [...
DAXX                  0.070   death-domain associated protein isoform a 
DAXX                  0.070   death-domain associated protein isoform a 
DAXX                  0.070   death-domain associated protein isoform b 
GON4L                 0.070   gon-4-like isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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