Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C14orf21 Sequence: fasta or formatted (636aa) NCBI GI: 28212272
Description:

hypothetical protein LOC161424

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         65           3
 C cysteine            2.0         13           1
 D aspartate           3.1         20           2
 E glutamate           7.9         50           8
 F phenylalanine       3.1         20           1
 G glycine             7.4         47           2
 H histidine           3.1         20           2
 I isoleucine          2.0         13           1
 K lysine              3.0         19           1
 L leucine            15.4         98           3
 M methionine          0.9          6           1
 N asparagine          1.6         10           1
 P proline             6.3         40           3
 Q glutamine           5.7         36           3
 R arginine            7.7         49           3
 S serine              7.1         45           3
 T threonine           4.2         27           2
 V valine              7.2         46           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.3          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC161424 
PUM1                  0.011   pumilio 1 isoform 1 
PUM2                  0.011   pumilio homolog 2 
PUM1                  0.009   pumilio 1 isoform 2 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
LOC100288524          0.008   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
LOC400236             0.008   PREDICTED: hypothetical protein 
LOC400236             0.008   PREDICTED: hypothetical protein 
HN1L                  0.008   hematological and neurological expressed 1-like [Hom...
RBMXL2                0.007   testes-specific heterogenous nuclear ribonucleoprot...
PRKCSH                0.007   protein kinase C substrate 80K-H isoform 2 
PRKCSH                0.007   protein kinase C substrate 80K-H isoform 1 
BAT2                  0.007   HLA-B associated transcript-2 
COL7A1                0.007   alpha 1 type VII collagen precursor 
HNRNPL                0.007   heterogeneous nuclear ribonucleoprotein L isoform b ...
HNRNPL                0.007   heterogeneous nuclear ribonucleoprotein L isoform a ...
MEX3D                 0.007   ring finger and KH domain containing 1 
LOC100293696          0.006   PREDICTED: hypothetical protein 
LOC100291277          0.006   PREDICTED: hypothetical protein XP_002347784 
LOC100287714          0.006   PREDICTED: hypothetical protein XP_002343551 
MICAL3                0.006   microtubule associated monoxygenase, calponin and L...
FGD1                  0.006   faciogenital dysplasia protein 
CROCC                 0.006   ciliary rootlet coiled-coil 
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PRM3                  0.006   protamine 3 
COLEC12               0.006   collectin sub-family member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press