Guide to the Human Genome
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Name: PUM1 Sequence: fasta or formatted (1186aa) NCBI GI: 13491166
Description:

pumilio 1 isoform 2

Referenced in:

Small RNAs in RNA Processing
Stem Cells and Early Development

Other entries for this name:
alt prot [1188aa] pumilio 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        117           7
 C cysteine            1.0         12           1
 D aspartate           4.4         52           2
 E glutamate           4.0         47           2
 F phenylalanine       3.3         39           2
 G glycine             9.8        116           4
 H histidine           3.0         35           2
 I isoleucine          3.2         38           2
 K lysine              3.5         41           2
 L leucine             8.3         99           2
 M methionine          2.1         25           2
 N asparagine          5.1         60           3
 P proline             6.7         80           3
 Q glutamine           8.3         98           4
 R arginine            4.0         47           2
 S serine              9.9        117           4
 T threonine           4.0         47           2
 V valine              6.4         76           2
 W tryptophan          0.5          6           1
 Y tyrosine            2.9         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pumilio 1 isoform 2 
PUM1                  0.998   pumilio 1 isoform 1 
PUM2                  0.672   pumilio homolog 2 
KIAA0020              0.020   KIAA0020 protein 
HRNR                  0.017   hornerin 
C14orf4               0.013   chromosome 14 open reading frame 4 
NUP214                0.012   nucleoporin 214kDa 
MED1                  0.011   mediator complex subunit 1 
DMKN                  0.011   dermokine isoform 2 precursor 
ZFR                   0.011   zinc finger RNA binding protein 
SRRM2                 0.010   splicing coactivator subunit SRm300 
CDSN                  0.010   corneodesmosin precursor 
CDC2L5                0.010   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.010   cell division cycle 2-like 5 isoform 2 
NUP153                0.010   nucleoporin 153kDa 
MUC21                 0.010   mucin 21 
DMKN                  0.010   dermokine isoform 4 precursor 
DMKN                  0.010   dermokine isoform 5 precursor 
DMKN                  0.010   dermokine isoform 3 precursor 
POM121                0.010   nuclear pore membrane protein 121 
NUP98                 0.009   nucleoporin 98kD isoform 3 
MUC12                 0.009   PREDICTED: mucin 12 
SPAG8                 0.008   sperm associated antigen 8 isoform 1 
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SPAG8                 0.008   sperm associated antigen 8 isoform 2 
NUP98                 0.008   nucleoporin 98kD isoform 4 
NUP98                 0.008   nucleoporin 98kD isoform 1 
NUP98                 0.008   nucleoporin 98kD isoform 2 
NAV2                  0.008   neuron navigator 2 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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