Guide to the Human Genome
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Name: HN1L Sequence: fasta or formatted (190aa) NCBI GI: 21700763
Description:

hematological and neurological expressed 1-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         13           2
 C cysteine            0.5          1           1
 D aspartate           3.2          6           1
 E glutamate           7.9         15           2
 F phenylalanine       3.7          7           1
 G glycine            11.6         22           2
 H histidine           2.6          5           1
 I isoleucine          3.2          6           1
 K lysine              6.8         13           1
 L leucine             3.7          7           1
 M methionine          2.1          4           1
 N asparagine          4.7          9           1
 P proline            14.7         28           2
 Q glutamine           2.6          5           1
 R arginine            6.3         12           1
 S serine             11.1         21           2
 T threonine           4.7          9           1
 V valine              3.2          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematological and neurological expressed 1-like [Hom... 
HN1                   0.073   hematological and neurological expressed 1 isoform 1 ...
HN1                   0.054   hematological and neurological expressed 1 isoform 2...
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
SYNJ1                 0.038   synaptojanin 1 isoform d 
PRB1                  0.038   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB4                  0.038   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 3 pre...
TGOLN2                0.032   trans-golgi network protein 2 
ARHGAP23              0.032   Rho GTPase activating protein 23 
MAST4                 0.032   microtubule associated serine/threonine kinase fami...
RLTPR                 0.030   RGD motif, leucine rich repeats, tropomodulin domain...
SYNJ1                 0.027   synaptojanin 1 isoform c 
BCL9L                 0.027   B-cell CLL/lymphoma 9-like 
C14orf21              0.027   hypothetical protein LOC161424 
PRB2                  0.027   proline-rich protein BstNI subfamily 2 
PRB3                  0.027   proline-rich protein BstNI subfamily 3 precursor [H...
SYNJ1                 0.024   synaptojanin 1 isoform a 
SYNJ1                 0.024   synaptojanin 1 isoform b 
ZFHX3                 0.022   AT-binding transcription factor 1 
ATN1                  0.022   atrophin-1 
ATN1                  0.022   atrophin-1 
RAPH1                 0.022   Ras association and pleckstrin homology domains 1 is...
C19orf57              0.022   hypothetical protein LOC79173 
SSH1                  0.022   slingshot 1 isoform 1 
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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