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Search of human proteins with 27764867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27764867 synaptophysin [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27764867 synaptophysin [Homo sapiens] 652 0.0
gi|194018518 synaptoporin isoform 1 [Homo sapiens] 340 1e-93
gi|21389481 synaptoporin isoform 2 [Homo sapiens] 309 2e-84
gi|105554421 mitsugumin 29 [Homo sapiens] 228 7e-60
gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens] 209 3e-54
gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens] 208 4e-54
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 53 4e-07
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 52 7e-07
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 52 7e-07
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 47 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 4e-05
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 44 1e-04
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 44 2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 43 3e-04
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 43 3e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 43 4e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 43 4e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 43 4e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 43 4e-04
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 43 4e-04
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 43 4e-04
gi|50511941 EMI domain containing 1 [Homo sapiens] 42 5e-04
gi|194018511 keratin 77 [Homo sapiens] 42 7e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 7e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 7e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 7e-04
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 42 0.001
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 42 0.001
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 42 0.001
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 41 0.001
>gi|27764867 synaptophysin [Homo sapiens]
Length = 313
Score = 652 bits (1683), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MLLLADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANK 60
MLLLADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANK
Sbjct: 1 MLLLADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANK 60
Query: 61 TESDLSIEVEFEYPFRLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMG 120
TESDLSIEVEFEYPFRLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMG
Sbjct: 61 TESDLSIEVEFEYPFRLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMG 120
Query: 121 ALATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEM 180
ALATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEM
Sbjct: 121 ALATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEM 180
Query: 181 PVCRQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAP 240
PVCRQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAP
Sbjct: 181 PVCRQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAP 240
Query: 241 EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY 300
EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY
Sbjct: 241 EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY 300
Query: 301 GPQGAPTSFSNQM 313
GPQGAPTSFSNQM
Sbjct: 301 GPQGAPTSFSNQM 313
>gi|194018518 synaptoporin isoform 1 [Homo sapiens]
Length = 285
Score = 340 bits (871), Expect = 1e-93
Identities = 176/309 (56%), Positives = 211/309 (68%), Gaps = 26/309 (8%)
Query: 7 MDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLS 66
MD V+QL + G FRV+KEPL F++ L+ +FAIFAFATCG YSG L+LSVDC NKTES+LS
Sbjct: 1 MDPVSQLASAGTFRVLKEPLAFLRALELLFAIFAFATCGGYSGGLRLSVDCVNKTESNLS 60
Query: 67 IEVEFEYPFRLHQVYFDAPTCRGGTT-KVFLVGDYSSSAEFFVTVAVFAFLYSMGALATY 125
I++ F YPFRLHQV F+ PTC G K+ L+GD SSSAEFFVTVAVFAFLYS+ A Y
Sbjct: 61 IDIAFAYPFRLHQVTFEVPTCEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVY 120
Query: 126 IFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQ 185
IF QNKYRENN+GP++DF+ T VF+F+WLV SSAWAKGLSDVK+ATDP+ ++ M C+Q
Sbjct: 121 IFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQ 180
Query: 186 TGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPA 245
N C + PV S LNTSVVFGFLN +LW GN+WFVFKETGW + R EK
Sbjct: 181 PSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKH-- 238
Query: 246 PGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD-YGQQGYGPQG 304
+Y GY QDSYG GY S + GP D +GQQ G
Sbjct: 239 -SSSYNQGGYN--------QDSYGSSSGY---------SQQASLGPTSDEFGQQPTG--- 277
Query: 305 APTSFSNQM 313
PTSF+NQ+
Sbjct: 278 -PTSFTNQI 285
>gi|21389481 synaptoporin isoform 2 [Homo sapiens]
Length = 265
Score = 309 bits (792), Expect = 2e-84
Identities = 161/281 (57%), Positives = 190/281 (67%), Gaps = 26/281 (9%)
Query: 35 VFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEFEYPFRLHQVYFDAPTCRGGTT-K 93
+FAIFAFATCG YSG L+LSVDC NKTES+LSI++ F YPFRLHQV F+ PTC G K
Sbjct: 9 LFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPTCEGKERQK 68
Query: 94 VFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENNKGPMLDFLATAVFAFMW 153
+ L+GD SSSAEFFVTVAVFAFLYS+ A YIF QNKYRENN+GP++DF+ T VF+F+W
Sbjct: 69 LALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLW 128
Query: 154 LVSSSAWAKGLSDVKMATDPENIIKEMPVCRQTGNTCKELRDPVTSGLNTSVVFGFLNLV 213
LV SSAWAKGLSDVK+ATDP+ ++ M C+Q N C + PV S LNTSVVFGFLN +
Sbjct: 129 LVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVFGFLNFI 188
Query: 214 LWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGG 273
LW GN+WFVFKETGW + R EK +Y GY QDSYG G
Sbjct: 189 LWAGNIWFVFKETGWHSSGQRYLSDPMEKH---SSSYNQGGYN--------QDSYGSSSG 237
Query: 274 YQPDYGQPAGSGGSGYGPQGD-YGQQGYGPQGAPTSFSNQM 313
Y S + GP D +GQQ G PTSF+NQ+
Sbjct: 238 Y---------SQQASLGPTSDEFGQQPTG----PTSFTNQI 265
>gi|105554421 mitsugumin 29 [Homo sapiens]
Length = 272
Score = 228 bits (580), Expect = 7e-60
Identities = 118/268 (44%), Positives = 157/268 (58%), Gaps = 18/268 (6%)
Query: 10 VNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEV 69
V++L+ G ++R ++EPLGF+KVLQW+FAIFAF +CGSYSGE V C N+ + SI V
Sbjct: 19 VDRLLVGLRWRRLEEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEAKDVSSIIV 78
Query: 70 EFEYPFRLHQVYFDAPTC--RGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIF 127
F YPFRLH++ ++ P C + + L+GD+S+ AEFFVT+ +F+F Y+M AL Y+
Sbjct: 79 AFGYPFRLHRIQYEMPLCDEESSSKTMHLMGDFSAPAEFFVTLGIFSFFYTMAALVIYLR 138
Query: 128 LQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQTG 187
N Y EN + P++DF T F F WLV+++AW KGL+DVK AT P ++ M VC
Sbjct: 139 FHNLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEE 198
Query: 188 NTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAPG 247
C P N SV+FGF+N LW GN WFVFKET W Q
Sbjct: 199 AVCSAGATPSMGLANISVLFGFINFFLWAGNCWFVFKETPW------------HGQGQGQ 246
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQ 275
D D GQGP Q+S QG +
Sbjct: 247 DQDQDQDQGQGPS----QESAAEQGAVE 270
>gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens]
Length = 259
Score = 209 bits (532), Expect = 3e-54
Identities = 106/243 (43%), Positives = 150/243 (61%), Gaps = 7/243 (2%)
Query: 10 VNQLVAGGQFRV--VKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSI 67
+ Q ++G Q + +KEPLGF+KVL+W+ +IFAFATCG + G+ ++ V+C + ++
Sbjct: 15 LGQRMSGFQINLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTV 74
Query: 68 EVEFEYPFRLHQVYFDAPT----CRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALA 123
F YPFRL++ F P C L+GDYSSSA+F+VT AVF FLY + AL
Sbjct: 75 TATFGYPFRLNEASFQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALL 134
Query: 124 TYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVC 183
Y+ + Y ++ K PM+DF+ T V F+WLVS+SAWAK L+D+K+AT NII E+P C
Sbjct: 135 LYVGYTSLYLDSRKLPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPPC 193
Query: 184 RQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQ 243
++ C LN SV+FGFLN++LW GN WFV+KET +P + P +
Sbjct: 194 KKKAVLCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGI 253
Query: 244 PAP 246
P P
Sbjct: 254 PPP 256
>gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens]
Length = 241
Score = 208 bits (530), Expect = 4e-54
Identities = 103/229 (44%), Positives = 143/229 (62%), Gaps = 5/229 (2%)
Query: 22 VKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEFEYPFRLHQVY 81
+KEPLGF+KVL+W+ +IFAFATCG + G+ ++ V+C + ++ F YPFRL++
Sbjct: 11 LKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPFRLNEAS 70
Query: 82 FDAPT----CRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENNK 137
F P C L+GDYSSSA+F+VT AVF FLY + AL Y+ + Y ++ K
Sbjct: 71 FQPPPGVNICDVNWKDYVLIGDYSSSAQFYVTFAVFVFLYCIAALLLYVGYTSLYLDSRK 130
Query: 138 GPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQTGNTCKELRDPV 197
PM+DF+ T V F+WLVS+SAWAK L+D+K+AT NII E+P C++ C
Sbjct: 131 LPMIDFVVTLVATFLWLVSTSAWAKALTDIKIATG-HNIIDELPPCKKKAVLCYFGSVTS 189
Query: 198 TSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAP 246
LN SV+FGFLN++LW GN WFV+KET +P + P + P P
Sbjct: 190 MGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSPSNTSAPHSQGGIPPP 238
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 52.8 bits (125), Expect = 4e-07
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSG 288
+ P G P+ P P D +G G + PG +GP GP G G Q G G G
Sbjct: 656 QGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQG 715
Query: 289 Y-GPQGDYGQQGY-GPQGAP 306
+ GPQG G QG+ GPQG P
Sbjct: 716 HIGPQGPPGPQGHLGPQGPP 735
Score = 42.4 bits (98), Expect = 5e-04
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGP----GGYGPQDSYGPQGGYQPDYGQPAGSGGSG--- 288
PPG P+ Q P G G QGP GG GPQ GPQG P G P G
Sbjct: 619 PPG-PQGQFRPPGPQGQMG-PQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQG 676
Query: 289 ----------------YGPQGDYGQQGY-GPQGAP 306
GPQG G QG+ GPQG P
Sbjct: 677 MQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPP 711
Score = 37.0 bits (84), Expect = 0.023
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYG----QPAGSGGSG 288
LR PPG+ +Q P + G G G GPQ P G P G Q + G
Sbjct: 852 LRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLG 911
Query: 289 YGPQGDYGQQG 299
GP+ + Q+G
Sbjct: 912 DGPRAPFNQEG 922
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 233 LRAPPGAPEKQ-PAP-----GDAYGDAGYGQGPGG---YGPQDSYGPQ--GGYQ--PDYG 279
++ PPG E Q PAP G + PGG +GPQ+ GPQ G Q P G
Sbjct: 784 MQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQG 843
Query: 280 QPAGSGGSGYGPQGDYGQQGYGPQGA 305
G GP G QQG PQG+
Sbjct: 844 SMLGPPQELRGPPGSQSQQG-PPQGS 868
Score = 31.2 bits (69), Expect = 1.2
Identities = 31/93 (33%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 234 RAPPG-----APEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG 288
+ PPG P+ P P G G PG G Q GP+G P + P G G G
Sbjct: 708 QGPPGPQGHIGPQGPPGPQGHLGPQG---PPGTQGMQGPPGPRGMQGPPH--PHGIQG-G 761
Query: 289 YGPQGDYGQQGYGP---------QGAPTSFSNQ 312
G QG G GP QG P NQ
Sbjct: 762 PGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQ 794
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 52.0 bits (123), Expect = 7e-07
Identities = 40/95 (42%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 231 PFLRAP-PGAPEKQPA-PGDAYGDAGYGQGP-----GGYGPQDSYGPQGGYQ----PDYG 279
P+ + P PGAP QP YG GY GP GGY PQ Y PQGGY P G
Sbjct: 31 PYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY-PQGPY-PQGGYPQGPYPQEG 88
Query: 280 QPAGSGGSGYGPQGDYGQQGY--GPQGAPTSFSNQ 312
P G G PQG Y Q + P G P F Q
Sbjct: 89 YPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVFPGQ 123
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 52.0 bits (123), Expect = 7e-07
Identities = 40/95 (42%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 231 PFLRAP-PGAPEKQPA-PGDAYGDAGYGQGP-----GGYGPQDSYGPQGGYQ----PDYG 279
P+ + P PGAP QP YG GY GP GGY PQ Y PQGGY P G
Sbjct: 31 PYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY-PQGPY-PQGGYPQGPYPQEG 88
Query: 280 QPAGSGGSGYGPQGDYGQQGY--GPQGAPTSFSNQ 312
P G G PQG Y Q + P G P F Q
Sbjct: 89 YPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVFPGQ 123
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 47.4 bits (111), Expect = 2e-05
Identities = 31/76 (40%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGY-GPQDSYGPQG--GYQPDYGQPAGSGGSGYG 290
R P P P P + G G +GP GY GP G G G Q D G +G G
Sbjct: 555 RPGPAGPPGPPGPPGSIGHPG-ARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613
Query: 291 PQGDYGQQGYGPQGAP 306
P+GD G Q GPQG P
Sbjct: 614 PEGDQGPQ--GPQGVP 627
Score = 38.9 bits (89), Expect = 0.006
Identities = 34/85 (40%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 225 ETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPA 282
E G A P PG P PG+ G+AG+ G GPQ G G G+Q GQ
Sbjct: 356 ELGEAGP--SGEPGVPGDAGMPGER-GEAGHRGSAGALGPQGPPGAPGVRGFQ---GQKG 409
Query: 283 GSGGSGY-GPQGDYGQQG-YGPQGA 305
G G GPQG G G GP GA
Sbjct: 410 SMGDPGLPGPQGLRGDVGDRGPGGA 434
Score = 34.3 bits (77), Expect = 0.15
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 210 LNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYG 269
L L+L +G L P PPG P K P G+AG PG GP+ + G
Sbjct: 10 LLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGK-PGQDGIDGEAGPPGLPGPPGPKGAPG 68
Query: 270 PQG--GYQPDYGQPAGSGGSGY----GPQGDYGQQG-YGPQGAP 306
G G G P G +G GP+G G++G GP G P
Sbjct: 69 KPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPP 112
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 234 RAPPGAPEKQPAPGDA--YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG--- 288
+ PG P PG G G PG GP GP G P G P G +G
Sbjct: 210 KGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPP-GIPGAPGKAGDRG 268
Query: 289 -------YGPQGDYGQQGYGPQGAP 306
GP+GD G+ GP+G P
Sbjct: 269 ERGPEGFRGPKGDLGRP--GPKGTP 291
Score = 31.2 bits (69), Expect = 1.2
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 236 PPGAPEK--QPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGYGP 291
PPG P + PG G+AG PGG G + GP G G G P G G P
Sbjct: 108 PPGPPGLGGKGLPGPP-GEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLP 166
Query: 292 QGDYGQQ-----GYGPQGAP 306
+G Q GP G P
Sbjct: 167 EGATDLQCPSICPPGPPGPP 186
Score = 30.0 bits (66), Expect = 2.8
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 234 RAPPGAPEKQPAPGD--AYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGP 291
+ PPGAP + G + GD G G G GP G P Q G
Sbjct: 393 QGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGD 452
Query: 292 QGDYGQQG-YGPQG 304
+G+ G G GP+G
Sbjct: 453 KGELGPSGLVGPKG 466
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.2 bits (108), Expect = 4e-05
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 237 PGAPEKQPAPGD-----AYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGG 286
PGAP + PG A G+ G G PG GP GP G G + + G P G G
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGA 871
Query: 287 SGY-------GPQGDYGQQG-YGPQGAP 306
+G+ GP G G G GP G+P
Sbjct: 872 AGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Score = 43.5 bits (101), Expect = 2e-04
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 231 PFLRAPPGAP-----EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAG 283
P +R PG+P + +P P + G++G PG GP+ G G G + + G P
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 284 S----GGSGYGPQGDYGQQG-YGPQGAP 306
+ G G GPQG G+ G GPQG P
Sbjct: 593 NGERGGPGGPGPQGPPGKNGETGPQGPP 620
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 230 APFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG- 288
+P + PPGAP G G G PG GP+ S GPQ G + + G+P +G SG
Sbjct: 934 SPGAQGPPGAPGPLGIAGIT-GARGLAGPPGMPGPRGSPGPQ-GVKGESGKPGANGLSGE 991
Query: 289 YGPQGDYGQQGY-GPQGAP 306
GP G G G G G P
Sbjct: 992 RGPPGPQGLPGLAGTAGEP 1010
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 230 APFLRAPPGAPEKQ--------PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQP 281
AP LR G P + P P A G G PG G S GP+G D G+P
Sbjct: 691 APGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKG----DKGEP 746
Query: 282 AGSGGSGY----GPQGDYGQQG-YGPQGAP 306
G G G GP+G G G GP G P
Sbjct: 747 GGPGADGVPGKDGPRGPTGPIGPPGPAGQP 776
Score = 39.3 bits (90), Expect = 0.005
Identities = 32/84 (38%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 234 RAPPGAPEKQPAPG--DAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY 289
R PG P PG G G PG GP S G G P + G P G SG
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSG- 921
Query: 290 GPQGDYGQQG-------YGPQGAP 306
P+GD GQ G GP GAP
Sbjct: 922 -PKGDAGQPGEKGSPGAQGPPGAP 944
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/83 (36%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 237 PGAPEKQPA----PGDAYGDAGYGQ-----GPGGYGPQDSYGPQGGYQPDYGQPAGSGGS 287
P P QP PG D G+ GPGG GPQ G G P G P +G
Sbjct: 568 PSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQ-GPPGPTGPG 626
Query: 288 G----YGPQGDYGQQGYGPQGAP 306
G GP G G QG G P
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGP 649
Score = 38.5 bits (88), Expect = 0.008
Identities = 32/86 (37%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------GYQPDYGQPA 282
P PPG K PG GDAG PGG G + G +G G + G P
Sbjct: 644 PGTGGPPGENGKPGEPGPK-GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Query: 283 GSGGSG-YGPQGDYGQQGY-GPQGAP 306
GG G GP G G G G QG P
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMP 728
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 231 PFLRAPPGAPEKQ-----PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPD--YGQPAG 283
P + P G+P ++ P P G G PGG G + + G +G P G P G
Sbjct: 788 PGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGG 847
Query: 284 SGGSG-YGPQGDYGQQG 299
SG +G GPQG G++G
Sbjct: 848 SGPAGPPGPQGVKGERG 864
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGY--QPDYGQPAGSGGSGY-- 289
R PPG P+ P G+ G PG G G GG + + G P G G+
Sbjct: 992 RGPPG-PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050
Query: 290 --------GPQGDYGQQG-YGPQGAP 306
G GD G+ G GP GAP
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAP 1076
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGY---- 289
R PG P +PG A G G PG GP+ GP G P G SG+
Sbjct: 1109 RGFPGNPGAPGSPGPA-GQQGAIGSPGPAGPRGPVGPSG-------PPGKDGTSGHPGPI 1160
Query: 290 GPQGDYGQQG-YGPQGAP 306
GP G G +G G +G+P
Sbjct: 1161 GPPGPRGNRGERGSEGSP 1178
Score = 35.8 bits (81), Expect = 0.050
Identities = 31/89 (34%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-G 290
PG+P GDA G G PG GP + GP G G + G P G G G
Sbjct: 914 PGSPGVSGPKGDA-GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPG 972
Query: 291 PQGDYGQQGY-------------GPQGAP 306
PQG G+ G GPQG P
Sbjct: 973 PQGVKGESGKPGANGLSGERGPPGPQGLP 1001
Score = 35.0 bits (79), Expect = 0.086
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGY---- 289
R PG P Q PG G+ G PG GP GG + D G P G G
Sbjct: 596 RGGPGGPGPQGPPGKN-GETGPQGPPGPTGP-------GGDKGDTGPPGPQGLQGLPGTG 647
Query: 290 GPQGDYGQQGY-GPQG 304
GP G+ G+ G GP+G
Sbjct: 648 GPPGENGKPGEPGPKG 663
Score = 34.3 bits (77), Expect = 0.15
Identities = 35/99 (35%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 230 APFLRAPPGAP----EKQPA----------PGDAYGDAGYGQGPGGYGPQDSYGPQGGYQ 275
AP R P G EK PA P A G+ G PGG G + G GG
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPG 546
Query: 276 PD--YGQPAGSGGSGY----GPQGDYGQQGY----GPQG 304
D G P G SG GP G GQ G GP+G
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKG 585
Score = 33.5 bits (75), Expect = 0.25
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQGDY 295
P P P P G G PG GP G G P G P G SG G G+
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP-GPPGAIGPSGPAGKDGES 233
Query: 296 GQQGY-GPQGAP 306
G+ G G +G P
Sbjct: 234 GRPGRPGERGLP 245
Score = 33.5 bits (75), Expect = 0.25
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 236 PPGAPEKQPAPGDAYGDAGYG---QGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQ 292
PPG P PG G GY PG GP GP G P PAG G G
Sbjct: 181 PPGPPGTSGHPGSP-GSPGYQGPPGEPGQAGPSGPPGPPGAIGP--SGPAGKDGES-GRP 236
Query: 293 GDYGQQGY-GPQG 304
G G++G GP G
Sbjct: 237 GRPGERGLPGPPG 249
Score = 33.5 bits (75), Expect = 0.25
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 30/95 (31%)
Query: 230 APFLRAPPGAP--------------EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQ 275
AP R PG P + QP P G AG+ PG G GP
Sbjct: 304 APGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKG---EVGPA---- 356
Query: 276 PDYGQPAGSGGSGY----GPQGDYGQQGYGPQGAP 306
G P +G G GPQG G Q GP G P
Sbjct: 357 ---GSPGSNGAPGQRGEPGPQGHAGAQ--GPPGPP 386
Score = 33.1 bits (74), Expect = 0.33
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 230 APFLRAPPGAPEK-----QPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------GYQP 276
AP LR G P K +P P G+AG PG G G G G
Sbjct: 424 APGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAG 483
Query: 277 DYGQPAGSGGSG-------YGPQGDYGQQG-YGPQGA 305
+ G P G +G GP G+ G G GP+GA
Sbjct: 484 ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQG---PGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQG 293
P P P P GD G G PG GP+ S G +G P PAG G+ G G
Sbjct: 763 PTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP--GPAGFPGAP-GQNG 819
Query: 294 DYGQQGYGPQGAP 306
+ G G G +GAP
Sbjct: 820 EPG--GKGERGAP 830
Score = 32.0 bits (71), Expect = 0.73
Identities = 33/97 (34%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 227 GWAAPFLRAPPG-----APEKQPAPGDAYGDAGYG--------QG-PGGYGPQDSYGPQG 272
G P + PPG P+ P P GD G QG PG GP G G
Sbjct: 598 GPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPG 657
Query: 273 --GYQPDYGQPAGSGGSG-YGPQGDYGQQGYGPQGAP 306
G + D G P GG G G G+ G G GAP
Sbjct: 658 EPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA--GAP 692
Score = 31.6 bits (70), Expect = 0.95
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 236 PPGAPEKQPAPGD--AYGDAGYGQGPGGYG---------PQDSYGPQGGYQPD--YGQPA 282
PPG P PG A G+ G PG G PQ G QG P G P
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
Query: 283 GSGGSGYGPQGDYGQQG-YGPQGAP 306
G G GP G G G G +G P
Sbjct: 394 GKG--EMGPAGIPGAPGLMGARGPP 416
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 230 APFLRAPPGAPEKQPAPGDA--YGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSG 285
AP PPG GD G AG PG G + + GPQG G + + G+ +G
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAG 1104
Query: 286 GSGY----------GPQGDYGQQGY----GPQG 304
G+ G G GQQG GP G
Sbjct: 1105 IKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Score = 30.8 bits (68), Expect = 1.6
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 245 APGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY-GPQGDYGQQG-Y 300
+PG A G G+ PG GP G +G P G P +G G GPQG G +G
Sbjct: 1039 SPG-APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGET 1097
Query: 301 GPQGA 305
G +GA
Sbjct: 1098 GERGA 1102
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 44.3 bits (103), Expect = 1e-04
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPA---GSGGSGYGPQGDYGQQGYGPQ 303
G + G GYG GY + G GG P Y + GSGG GYG QG GYG
Sbjct: 229 GGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQG----SGYGGS 284
Query: 304 GAPTSFSN 311
G+ S++N
Sbjct: 285 GSYDSYNN 292
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 251 GDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQG 304
G+ G G+G GG+G D++G G + G GG GYG GD G G+G G
Sbjct: 200 GNFGGGRG-GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD-GYNGFGNDG 251
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 246 PGDAYGDAGYGQGPGGYGPQDS-YGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQG 299
PG + G GYG G GYG Q S YG G Y D G GG G G ++G G
Sbjct: 258 PGYSGGSRGYGSGGQGYGNQGSGYGGSGSY--DSYNNGGGGGFGGGSGSNFGGGG 310
Score = 38.1 bits (87), Expect = 0.010
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQG 304
GD Y G G GG GP S G +G GQ G+ GSGYG G Y G G
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRG--YGSGGQGYGNQGSGYGGSGSYDSYNNGGGG 296
Score = 35.4 bits (80), Expect = 0.066
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSY--GPQGGYQPDYGQPAGSGGSGYGPQGDYGQQ--GYGP 302
G YG+ G G GG G DSY G GG+ G G GGS Y G+Y Q +GP
Sbjct: 271 GQGYGN--QGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGS-YNDFGNYNNQSSNFGP 327
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/84 (39%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 237 PGAPEKQPAPGD-------AYGDAGYGQGPGGYGPQDSYGPQG----GYQPDYGQ---PA 282
PG P + PG GD G PG GP GP+G G + D GQ P
Sbjct: 640 PGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPG 699
Query: 283 GSGGSGYGPQGDYGQQGYGPQGAP 306
G GYG QG G+Q GPQG P
Sbjct: 700 PPGPPGYGSQGIKGEQ--GPQGFP 721
Score = 37.0 bits (84), Expect = 0.023
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 231 PFLRAPPGAPEK-QPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGS 284
P R P G P K QP P GD G G G + GP+G G +G P S
Sbjct: 533 PGARGPEGPPGKGQPGPK---GDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTS 589
Query: 285 GGSGYGPQGDYGQQGY-GPQGAP 306
GP+GD G G G +G P
Sbjct: 590 IPGPPGPKGDRGGPGIPGFKGEP 612
Score = 33.5 bits (75), Expect = 0.25
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGS--G 288
P R P G P ++ PG+ + PG G + S GP G G G
Sbjct: 388 PGPRGPEGVPGERGLPGEGF--------PGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGP 439
Query: 289 YGPQGDYGQQGYGPQG 304
GPQG G G G QG
Sbjct: 440 VGPQGPMGIPGIGSQG 455
Score = 31.6 bits (70), Expect = 0.95
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPD--YGQPAGSGGSG 288
P ++ G+P P G G PG GP+ G +G P YG P G
Sbjct: 303 PGIKGDKGSPGPY-GPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQ 361
Query: 289 YGPQGDYGQQGYGPQGAP 306
G +G+ GQ+ G GAP
Sbjct: 362 QGIKGERGQE--GRPGAP 377
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.1 bits (100), Expect = 3e-04
Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGYGPQGD 294
PGA +PG + G G PG GPQ S GPQG G D G P G + GP+G+
Sbjct: 428 PGAKGPTGSPGTS-GPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEA--GPKGE 484
Query: 295 YGQQG-YGPQGAP 306
G G GP G P
Sbjct: 485 PGPHGIQGPIGPP 497
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/104 (33%), Positives = 42/104 (40%), Gaps = 33/104 (31%)
Query: 236 PPGAPEKQPAPGD-----AYGDAGYGQGPGGYGP---------QDSYGPQG--GYQPDYG 279
P G P Q APG A GDAG PG GP + GPQG G + D+G
Sbjct: 1075 PAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHG 1134
Query: 280 QPAGSGGSGY----------GPQGDYGQQG-------YGPQGAP 306
G G+ GP G G+QG +GP+G P
Sbjct: 1135 DRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPP 1178
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 226 TGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG 285
TG+ R P P P P G+ G PG G S+G G D G PAG
Sbjct: 908 TGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVG----DRG-PAGPP 962
Query: 286 GSGYGPQGDYGQQGY-GPQGAP 306
G G G +GD G+ G GP G P
Sbjct: 963 G-GPGDKGDPGEDGQPGPDGPP 983
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSG----- 285
L PPG P + PGD G PG GP GP+G G + G+P +G
Sbjct: 679 LPGPPGPPGEGGKPGDQ----GVPGDPGAVGP---LGPRGERGNPGERGEPGITGLPGEK 731
Query: 286 --GSGYGPQGDYGQQGYGPQGAP 306
G+GP G G GP G P
Sbjct: 732 GMAGGHGPDGPKGSP--GPSGTP 752
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 235 APPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQG 293
A P P+ QP G+ G G GPQ G G + P+ G P GG G GP G
Sbjct: 848 AGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPN-GVPGLKGGRGTQGPPG 906
Query: 294 DYGQQGY-------GPQGAP 306
G G GP GAP
Sbjct: 907 ATGFPGSAGRVGPPGPAGAP 926
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 235 APPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDS------YGPQG-----GYQPDYGQPAG 283
A P + +P P G G PG G GPQG G + + G+P
Sbjct: 809 AGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQ 868
Query: 284 SGGSGY-GPQGDYGQQG-YGPQGAP 306
G +G GPQG G G +GP G P
Sbjct: 869 KGDAGSPGPQGLAGSPGPHGPNGVP 893
Score = 34.3 bits (77), Expect = 0.15
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 230 APFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGY 289
AP R G P K P P G G PG G + GP G P+
Sbjct: 352 APGQRGAHGMPGK-PGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPE------------ 398
Query: 290 GPQGDYGQQG-YGPQGAP 306
GPQG G+ G GP G+P
Sbjct: 399 GPQGQRGETGPPGPVGSP 416
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG-YG 290
R P G +Q G G G PG GP S GP+G G + G+P +G G G
Sbjct: 221 RGPQGLQGQQGGAGPT-GPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVG 279
Query: 291 PQGDYGQQGY-GPQGAP 306
G G +G+ G G P
Sbjct: 280 FAGSPGARGFPGAPGLP 296
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 24/99 (24%)
Query: 231 PFLRAPPGAPEKQPA---------PGDA-----YGDAGYGQGPGGYGPQDSYGPQG--GY 274
P PPG+P Q + PGD G+AG PG +G Q GP G G
Sbjct: 443 PGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGK 502
Query: 275 QPDYGQPAGSGGSG-YGPQGDYGQQGY-------GPQGA 305
+ G P G G G +G G +G+ GP+GA
Sbjct: 503 RGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGA 541
Score = 33.1 bits (74), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 244 PAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------GYQPDYGQPAGSGGSG-YGPQGD 294
P P G+ G PG +GP+ GP G G G P G G GP+G
Sbjct: 1154 PGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP 1213
Query: 295 YGQQG-YGPQGAP 306
G+ G GP G P
Sbjct: 1214 PGEPGPPGPPGPP 1226
Score = 32.7 bits (73), Expect = 0.43
Identities = 28/82 (34%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 238 GAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-GP 291
G P P G G PG GP+ GP+G G Q G+P G G GP
Sbjct: 116 GEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGP 175
Query: 292 QGDYGQQGYGPQGAPTSFSNQM 313
G GP G FS QM
Sbjct: 176 PGHPSHP--GPDGLSRPFSAQM 195
Score = 32.7 bits (73), Expect = 0.43
Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGG 286
G + PF G EK G PG GP GPQG GQ G+G
Sbjct: 186 GLSRPFSAQMAGLDEKSGLGSQV------GLMPGSVGPVGPRGPQG----LQGQQGGAGP 235
Query: 287 SG-YGPQGDYGQQG----YGPQGAP 306
+G G GD G G GP+G P
Sbjct: 236 TGPPGEPGDPGPMGPIGSRGPEGPP 260
Score = 32.0 bits (71), Expect = 0.73
Identities = 35/110 (31%), Positives = 38/110 (34%), Gaps = 38/110 (34%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG------------------ 272
P L P G P K P A GD G PG GP S GP G
Sbjct: 1007 PGLPGPAGTPGKV-GPTGATGDKG---PPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDG 1062
Query: 273 --GYQPDYGQPAGSGGSG----------YGPQGDYGQQG----YGPQGAP 306
G + D G P +G G G GD GQ+G GP G P
Sbjct: 1063 AVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPP 1112
Score = 31.2 bits (69), Expect = 1.2
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + PG A G G PG GP+ GP G D G+P G G +G G
Sbjct: 560 PGRPGEPGLPG-ARGLTG---NPGVQGPEGKLGPLGAPGED-GRPGPPGSIGI--RGQPG 612
Query: 297 QQGY-GPQGA 305
G GP+G+
Sbjct: 613 SMGLPGPKGS 622
Score = 28.9 bits (63), Expect = 6.2
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 240 PEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY----GPQG 293
P+ +P P G G G GP+ G G P + G P G G GP+G
Sbjct: 481 PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG 540
Query: 294 DYGQQG----YGPQGA 305
G++G GP+G+
Sbjct: 541 AQGERGPVGSSGPKGS 556
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 43.1 bits (100), Expect = 3e-04
Identities = 33/84 (39%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 236 PPGAPEKQPAPGDAYGDAGYG-----QGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSG 288
PPG PAPG YG G PG + GP GG P YGQP S
Sbjct: 41 PPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPP---PSS 97
Query: 289 YGPQ--GDYGQQGYGPQGAPTSFS 310
YG Q G YGQ G P P ++S
Sbjct: 98 YGAQQPGLYGQGGAPPNVDPEAYS 121
Score = 42.0 bits (97), Expect = 7e-04
Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQG---PGGYG---PQDSYGPQGGYQPDYGQ------PAGS 284
PGAP PG YG G GGYG P YGP G P YG P+G+
Sbjct: 18 PGAPPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGP-YGHPNPGMFPSGT 76
Query: 285 GGSGYG---PQGDYGQ---QGYGPQ 303
G YG P G YGQ YG Q
Sbjct: 77 PGGPYGGAAPGGPYGQPPPSSYGAQ 101
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/71 (40%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 240 PEKQPAPGDAYGDAGYGQGPGGYGPQDSY---GPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
P +Q PG A GQ PG P SY P G Q G P G G G P G YG
Sbjct: 5 PYRQGCPGAA------GQAPGA--PPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYG 56
Query: 297 -QQGYGPQGAP 306
G GP G P
Sbjct: 57 PPAGGGPYGHP 67
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/84 (40%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY-- 289
+ PPG P +PG A G A GP GYGPQ G QG G G P +G G
Sbjct: 595 QGPPGDPGSPGSPGPA-GPA----GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELS 649
Query: 290 ------GPQGDYGQQGY-GPQGAP 306
GP G G G+ GPQG P
Sbjct: 650 VSTPVPGPPGPPGPPGHPGPQGPP 673
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-G 290
PG P + PG G PG G + GP+G G + D G P G G G
Sbjct: 553 PGDPGLRGQPGRK----GLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 291 PQGDYGQQGYGPQGAP 306
P G G GYGPQG P
Sbjct: 609 PAGPAGPPGYGPQGEP 624
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + PG G+ G GP G G P PAG GYGPQG+ G
Sbjct: 571 PGTPGVKGLPGPK-GELALSGEKGDQGPPGDPGSPGS--PGPAGPAGP--PGYGPQGEPG 625
Query: 297 QQG-YGPQGAP 306
QG G GAP
Sbjct: 626 LQGTQGVPGAP 636
Score = 35.0 bits (79), Expect = 0.086
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 231 PFLRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSY-------GPQG-----GYQP 276
P +R PPG P P P GD G PG G + GP+G G +
Sbjct: 1133 PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 277 DYGQPAGSGGSG-------YGPQGDYGQQGY-GPQGAP 306
D G P G G GP+G G +G+ GP G P
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLP 1230
Score = 35.0 bits (79), Expect = 0.086
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 231 PFLRAPPGAPE-----KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG 285
P +R PG + P P G+ G PG GP + GP G G+P G
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGKPGKDG 1397
Query: 286 GSGY-GPQGDYGQQGYGPQGAPTSFSNQM 313
G GP G+ G + G +G P S +Q+
Sbjct: 1398 KPGTPGPAGEKGNK--GSKGEPESLFHQL 1424
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 236 PPGAPEKQPAPG-----DAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
P GAP +PG +GD G+ G GP GP G G+ G G G
Sbjct: 1099 PEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQG 1158
Query: 289 Y----GPQGDYGQQGY-----GPQGAP 306
GP G+ G+ G GP+G P
Sbjct: 1159 RDGIPGPAGEKGETGLLRAPPGPRGNP 1185
Score = 33.1 bits (74), Expect = 0.33
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 40/117 (34%)
Query: 225 ETGWAAPFLRAPPGA---PEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------- 272
ETG LRAPPG P Q A GD G G+ PG G GP+G
Sbjct: 1171 ETG----LLRAPPGPRGNPGAQGAKGDR-GAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 273 ----------GYQPDYGQPAGSGGSG------------YGPQGDYGQQGY-GPQGAP 306
G + G P G G G +GD G G+ GP+G P
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 32.3 bits (72), Expect = 0.56
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY----GPQ 303
D Y + G PG GP+ + GPQG P G P G S G +G G G G +
Sbjct: 348 DTYQEKGDEGTPGPPGPRGARGPQGPSGPP-GVPGSPGSSRPGLRGAPGWPGLKGSKGER 406
Query: 304 GAP 306
G P
Sbjct: 407 GRP 409
Score = 32.0 bits (71), Expect = 0.73
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGS 287
L+ PG P P P G G PG G S G G G + G P +G
Sbjct: 983 LKGLPG-PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRP 1041
Query: 288 G----YGPQGDYGQQGY---------GPQGAP 306
G +G QGD G+ GY GP G P
Sbjct: 1042 GLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDP 1073
Score = 31.6 bits (70), Expect = 0.95
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 234 RAPPGAPE-KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY- 289
+ PG E +P P GD G G G GP G P G P G G
Sbjct: 1053 KGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP 1112
Query: 290 ---GPQGDYGQQG----YGPQG 304
GP GD G +G GP G
Sbjct: 1113 GKPGPHGDLGFKGIKGLLGPPG 1134
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 237 PGAPEKQ--PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQG 293
PGAP Q P P G G PG +G + GP+G P G G G +G
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG--------PKGHMGERVIGHKG 227
Query: 294 DYGQQGY-GPQGAP 306
+ G +G GP G P
Sbjct: 228 ERGVKGLTGPPGPP 241
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 237 PGAPEKQPAPGDAYG-DAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY- 289
PG P PG++YG + G PG G G G G + + G P G G
Sbjct: 270 PGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIK 329
Query: 290 GPQGDYGQQGY-GP 302
G +GD G G+ GP
Sbjct: 330 GQKGDIGPPGFRGP 343
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
P LR PG+ PG G G PG G G G Q D G+P S G+ G
Sbjct: 1008 PGLRGIPGSMGNMGMPGSK-GKRGTLGFPGRAGRPGLPGIHG-LQGDKGEPGYSEGTRPG 1065
Query: 291 PQGDYGQQG 299
P G G G
Sbjct: 1066 PPGPTGDPG 1074
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGY-GPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PPG P PG QGP G G G G PD G+P G GP G
Sbjct: 657 PPGPPGPPGHPGP--------QGPPGIPGSLGKCGDPGLPGPD-GEPGIPGIGFPGPPGP 707
Query: 295 YGQQGY-GPQGA 305
G QG+ G +G+
Sbjct: 708 KGDQGFPGTKGS 719
Score = 28.5 bits (62), Expect = 8.0
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGD----------AYGDAGYGQGPGGYGPQDSYGPQGGYQP 276
G + P LR PG P + + G+ G G PG G GP G
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVF 443
Query: 277 DYGQPAGSGGSGY-GPQGDYGQQGYGPQGAP 306
G P G GY G G G GP+G P
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVD--GPKGEP 472
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/84 (40%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY-- 289
+ PPG P +PG A G A GP GYGPQ G QG G G P +G G
Sbjct: 595 QGPPGDPGSPGSPGPA-GPA----GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELS 649
Query: 290 ------GPQGDYGQQGY-GPQGAP 306
GP G G G+ GPQG P
Sbjct: 650 VSTPVPGPPGPPGPPGHPGPQGPP 673
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-G 290
PG P + PG G PG G + GP+G G + D G P G G G
Sbjct: 553 PGDPGLRGQPGRK----GLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 291 PQGDYGQQGYGPQGAP 306
P G G GYGPQG P
Sbjct: 609 PAGPAGPPGYGPQGEP 624
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + PG G+ G GP G G P PAG GYGPQG+ G
Sbjct: 571 PGTPGVKGLPGPK-GELALSGEKGDQGPPGDPGSPGS--PGPAGPAGP--PGYGPQGEPG 625
Query: 297 QQG-YGPQGAP 306
QG G GAP
Sbjct: 626 LQGTQGVPGAP 636
Score = 35.0 bits (79), Expect = 0.086
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 231 PFLRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSY-------GPQG-----GYQP 276
P +R PPG P P P GD G PG G + GP+G G +
Sbjct: 1133 PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 277 DYGQPAGSGGSG-------YGPQGDYGQQGY-GPQGAP 306
D G P G G GP+G G +G+ GP G P
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLP 1230
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 236 PPGAPEKQPAPG-----DAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
P GAP +PG +GD G+ G GP GP G G+ G G G
Sbjct: 1099 PEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQG 1158
Query: 289 Y----GPQGDYGQQGY-----GPQGAP 306
GP G+ G+ G GP+G P
Sbjct: 1159 RDGIPGPAGEKGETGLLRAPPGPRGNP 1185
Score = 33.1 bits (74), Expect = 0.33
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 40/117 (34%)
Query: 225 ETGWAAPFLRAPPGA---PEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------- 272
ETG LRAPPG P Q A GD G G+ PG G GP+G
Sbjct: 1171 ETG----LLRAPPGPRGNPGAQGAKGDR-GAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 273 ----------GYQPDYGQPAGSGGSG------------YGPQGDYGQQGY-GPQGAP 306
G + G P G G G +GD G G+ GP+G P
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 231 PFLRAPPGAPE-----KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG 285
P +R PG + P P G+ G PG GP + GP G G+P G
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGKPGKDG 1397
Query: 286 GSGY-GPQGDYGQQGY----GPQGA 305
G GP G+ G +G GP G+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGS 1422
Score = 32.3 bits (72), Expect = 0.56
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY----GPQ 303
D Y + G PG GP+ + GPQG P G P G S G +G G G G +
Sbjct: 348 DTYQEKGDEGTPGPPGPRGARGPQGPSGPP-GVPGSPGSSRPGLRGAPGWPGLKGSKGER 406
Query: 304 GAP 306
G P
Sbjct: 407 GRP 409
Score = 32.0 bits (71), Expect = 0.73
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGS 287
L+ PG P P P G G PG G S G G G + G P +G
Sbjct: 983 LKGLPG-PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRP 1041
Query: 288 G----YGPQGDYGQQGY---------GPQGAP 306
G +G QGD G+ GY GP G P
Sbjct: 1042 GLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDP 1073
Score = 31.6 bits (70), Expect = 0.95
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 234 RAPPGAPE-KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY- 289
+ PG E +P P GD G G G GP G P G P G G
Sbjct: 1053 KGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP 1112
Query: 290 ---GPQGDYGQQG----YGPQG 304
GP GD G +G GP G
Sbjct: 1113 GKPGPHGDLGFKGIKGLLGPPG 1134
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 237 PGAPEKQ--PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQG 293
PGAP Q P P G G PG +G + GP+G P G G G +G
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG--------PKGHMGERVIGHKG 227
Query: 294 DYGQQGY-GPQGAP 306
+ G +G GP G P
Sbjct: 228 ERGVKGLTGPPGPP 241
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 237 PGAPEKQPAPGDAYG-DAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY- 289
PG P PG++YG + G PG G G G G + + G P G G
Sbjct: 270 PGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIK 329
Query: 290 GPQGDYGQQGY-GP 302
G +GD G G+ GP
Sbjct: 330 GQKGDIGPPGFRGP 343
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
P LR PG+ PG G G PG G G G Q D G+P S G+ G
Sbjct: 1008 PGLRGIPGSMGNMGMPGSK-GKRGTLGFPGRAGRPGLPGIHG-LQGDKGEPGYSEGTRPG 1065
Query: 291 PQGDYGQQG 299
P G G G
Sbjct: 1066 PPGPTGDPG 1074
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGY-GPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PPG P PG QGP G G G G PD G+P G GP G
Sbjct: 657 PPGPPGPPGHPGP--------QGPPGIPGSLGKCGDPGLPGPD-GEPGIPGIGFPGPPGP 707
Query: 295 YGQQGY-GPQGA 305
G QG+ G +G+
Sbjct: 708 KGDQGFPGTKGS 719
Score = 28.5 bits (62), Expect = 8.0
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGD----------AYGDAGYGQGPGGYGPQDSYGPQGGYQP 276
G + P LR PG P + + G+ G G PG G GP G
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVF 443
Query: 277 DYGQPAGSGGSGY-GPQGDYGQQGYGPQGAP 306
G P G GY G G G GP+G P
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVD--GPKGEP 472
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/84 (40%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY-- 289
+ PPG P +PG A G A GP GYGPQ G QG G G P +G G
Sbjct: 595 QGPPGDPGSPGSPGPA-GPA----GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELS 649
Query: 290 ------GPQGDYGQQGY-GPQGAP 306
GP G G G+ GPQG P
Sbjct: 650 VSTPVPGPPGPPGPPGHPGPQGPP 673
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-G 290
PG P + PG G PG G + GP+G G + D G P G G G
Sbjct: 553 PGDPGLRGQPGRK----GLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 291 PQGDYGQQGYGPQGAP 306
P G G GYGPQG P
Sbjct: 609 PAGPAGPPGYGPQGEP 624
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + PG G+ G GP G G P PAG GYGPQG+ G
Sbjct: 571 PGTPGVKGLPGPK-GELALSGEKGDQGPPGDPGSPGS--PGPAGPAGP--PGYGPQGEPG 625
Query: 297 QQG-YGPQGAP 306
QG G GAP
Sbjct: 626 LQGTQGVPGAP 636
Score = 35.0 bits (79), Expect = 0.086
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 231 PFLRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSY-------GPQG-----GYQP 276
P +R PPG P P P GD G PG G + GP+G G +
Sbjct: 1133 PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 277 DYGQPAGSGGSG-------YGPQGDYGQQGY-GPQGAP 306
D G P G G GP+G G +G+ GP G P
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLP 1230
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 236 PPGAPEKQPAPG-----DAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
P GAP +PG +GD G+ G GP GP G G+ G G G
Sbjct: 1099 PEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQG 1158
Query: 289 Y----GPQGDYGQQGY-----GPQGAP 306
GP G+ G+ G GP+G P
Sbjct: 1159 RDGIPGPAGEKGETGLLRAPPGPRGNP 1185
Score = 33.1 bits (74), Expect = 0.33
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 40/117 (34%)
Query: 225 ETGWAAPFLRAPPGA---PEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------- 272
ETG LRAPPG P Q A GD G G+ PG G GP+G
Sbjct: 1171 ETG----LLRAPPGPRGNPGAQGAKGDR-GAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 273 ----------GYQPDYGQPAGSGGSG------------YGPQGDYGQQGY-GPQGAP 306
G + G P G G G +GD G G+ GP+G P
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 231 PFLRAPPGAPE-----KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG 285
P +R PG + P P G+ G PG GP + GP G G+P G
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGKPGKDG 1397
Query: 286 GSGY-GPQGDYGQQGY----GPQGA 305
G GP G+ G +G GP G+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGS 1422
Score = 32.3 bits (72), Expect = 0.56
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY----GPQ 303
D Y + G PG GP+ + GPQG P G P G S G +G G G G +
Sbjct: 348 DTYQEKGDEGTPGPPGPRGARGPQGPSGPP-GVPGSPGSSRPGLRGAPGWPGLKGSKGER 406
Query: 304 GAP 306
G P
Sbjct: 407 GRP 409
Score = 32.0 bits (71), Expect = 0.73
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGS 287
L+ PG P P P G G PG G S G G G + G P +G
Sbjct: 983 LKGLPG-PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRP 1041
Query: 288 G----YGPQGDYGQQGY---------GPQGAP 306
G +G QGD G+ GY GP G P
Sbjct: 1042 GLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDP 1073
Score = 31.6 bits (70), Expect = 0.95
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 234 RAPPGAPE-KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY- 289
+ PG E +P P GD G G G GP G P G P G G
Sbjct: 1053 KGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP 1112
Query: 290 ---GPQGDYGQQG----YGPQG 304
GP GD G +G GP G
Sbjct: 1113 GKPGPHGDLGFKGIKGLLGPPG 1134
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 237 PGAPEKQ--PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQG 293
PGAP Q P P G G PG +G + GP+G P G G G +G
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG--------PKGHMGERVIGHKG 227
Query: 294 DYGQQGY-GPQGAP 306
+ G +G GP G P
Sbjct: 228 ERGVKGLTGPPGPP 241
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 237 PGAPEKQPAPGDAYG-DAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY- 289
PG P PG++YG + G PG G G G G + + G P G G
Sbjct: 270 PGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIK 329
Query: 290 GPQGDYGQQGY-GP 302
G +GD G G+ GP
Sbjct: 330 GQKGDIGPPGFRGP 343
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
P LR PG+ PG G G PG G G G Q D G+P S G+ G
Sbjct: 1008 PGLRGIPGSMGNMGMPGSK-GKRGTLGFPGRAGRPGLPGIHG-LQGDKGEPGYSEGTRPG 1065
Query: 291 PQGDYGQQG 299
P G G G
Sbjct: 1066 PPGPTGDPG 1074
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGY-GPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PPG P PG QGP G G G G PD G+P G GP G
Sbjct: 657 PPGPPGPPGHPGP--------QGPPGIPGSLGKCGDPGLPGPD-GEPGIPGIGFPGPPGP 707
Query: 295 YGQQGY-GPQGA 305
G QG+ G +G+
Sbjct: 708 KGDQGFPGTKGS 719
Score = 28.5 bits (62), Expect = 8.0
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGD----------AYGDAGYGQGPGGYGPQDSYGPQGGYQP 276
G + P LR PG P + + G+ G G PG G GP G
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVF 443
Query: 277 DYGQPAGSGGSGY-GPQGDYGQQGYGPQGAP 306
G P G GY G G G GP+G P
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVD--GPKGEP 472
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/84 (40%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY-- 289
+ PPG P +PG A G A GP GYGPQ G QG G G P +G G
Sbjct: 595 QGPPGDPGSPGSPGPA-GPA----GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELS 649
Query: 290 ------GPQGDYGQQGY-GPQGAP 306
GP G G G+ GPQG P
Sbjct: 650 VSTPVPGPPGPPGPPGHPGPQGPP 673
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY-G 290
PG P + PG G PG G + GP+G G + D G P G G G
Sbjct: 553 PGDPGLRGQPGRK----GLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 291 PQGDYGQQGYGPQGAP 306
P G G GYGPQG P
Sbjct: 609 PAGPAGPPGYGPQGEP 624
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + PG G+ G GP G G P PAG GYGPQG+ G
Sbjct: 571 PGTPGVKGLPGPK-GELALSGEKGDQGPPGDPGSPGS--PGPAGPAGP--PGYGPQGEPG 625
Query: 297 QQG-YGPQGAP 306
QG G GAP
Sbjct: 626 LQGTQGVPGAP 636
Score = 35.0 bits (79), Expect = 0.086
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 231 PFLRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSY-------GPQG-----GYQP 276
P +R PPG P P P GD G PG G + GP+G G +
Sbjct: 1133 PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 277 DYGQPAGSGGSG-------YGPQGDYGQQGY-GPQGAP 306
D G P G G GP+G G +G+ GP G P
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLP 1230
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 236 PPGAPEKQPAPG-----DAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
P GAP +PG +GD G+ G GP GP G G+ G G G
Sbjct: 1099 PEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQG 1158
Query: 289 Y----GPQGDYGQQGY-----GPQGAP 306
GP G+ G+ G GP+G P
Sbjct: 1159 RDGIPGPAGEKGETGLLRAPPGPRGNP 1185
Score = 33.1 bits (74), Expect = 0.33
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 40/117 (34%)
Query: 225 ETGWAAPFLRAPPGA---PEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--------- 272
ETG LRAPPG P Q A GD G G+ PG G GP+G
Sbjct: 1171 ETG----LLRAPPGPRGNPGAQGAKGDR-GAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 273 ----------GYQPDYGQPAGSGGSG------------YGPQGDYGQQGY-GPQGAP 306
G + G P G G G +GD G G+ GP+G P
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 231 PFLRAPPGAPE-----KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG 285
P +R PG + P P G+ G PG GP + GP G G+P G
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGKPGKDG 1397
Query: 286 GSGY-GPQGDYGQQGY----GPQGA 305
G GP G+ G +G GP G+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGS 1422
Score = 32.3 bits (72), Expect = 0.56
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGY----GPQ 303
D Y + G PG GP+ + GPQG P G P G S G +G G G G +
Sbjct: 348 DTYQEKGDEGTPGPPGPRGARGPQGPSGPP-GVPGSPGSSRPGLRGAPGWPGLKGSKGER 406
Query: 304 GAP 306
G P
Sbjct: 407 GRP 409
Score = 32.0 bits (71), Expect = 0.73
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGS 287
L+ PG P P P G G PG G S G G G + G P +G
Sbjct: 983 LKGLPG-PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRP 1041
Query: 288 G----YGPQGDYGQQGY---------GPQGAP 306
G +G QGD G+ GY GP G P
Sbjct: 1042 GLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDP 1073
Score = 31.6 bits (70), Expect = 0.95
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 234 RAPPGAPE-KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--DYGQPAGSGGSGY- 289
+ PG E +P P GD G G G GP G P G P G G
Sbjct: 1053 KGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP 1112
Query: 290 ---GPQGDYGQQG----YGPQG 304
GP GD G +G GP G
Sbjct: 1113 GKPGPHGDLGFKGIKGLLGPPG 1134
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 237 PGAPEKQ--PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQG 293
PGAP Q P P G G PG +G + GP+G P G G G +G
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRG--------PKGHMGERVIGHKG 227
Query: 294 DYGQQGY-GPQGAP 306
+ G +G GP G P
Sbjct: 228 ERGVKGLTGPPGPP 241
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 237 PGAPEKQPAPGDAYG-DAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQPAGSGGSGY- 289
PG P PG++YG + G PG G G G G + + G P G G
Sbjct: 270 PGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIK 329
Query: 290 GPQGDYGQQGY-GP 302
G +GD G G+ GP
Sbjct: 330 GQKGDIGPPGFRGP 343
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
P LR PG+ PG G G PG G G G Q D G+P S G+ G
Sbjct: 1008 PGLRGIPGSMGNMGMPGSK-GKRGTLGFPGRAGRPGLPGIHG-LQGDKGEPGYSEGTRPG 1065
Query: 291 PQGDYGQQG 299
P G G G
Sbjct: 1066 PPGPTGDPG 1074
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGY-GPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PPG P PG QGP G G G G PD G+P G GP G
Sbjct: 657 PPGPPGPPGHPGP--------QGPPGIPGSLGKCGDPGLPGPD-GEPGIPGIGFPGPPGP 707
Query: 295 YGQQGY-GPQGA 305
G QG+ G +G+
Sbjct: 708 KGDQGFPGTKGS 719
Score = 28.5 bits (62), Expect = 8.0
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGD----------AYGDAGYGQGPGGYGPQDSYGPQGGYQP 276
G + P LR PG P + + G+ G G PG G GP G
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVF 443
Query: 277 DYGQPAGSGGSGY-GPQGDYGQQGYGPQGAP 306
G P G GY G G G GP+G P
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVD--GPKGEP 472
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/90 (38%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 231 PFLRAPPGAPE--KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGG-- 286
P L PPG P K PG GD G G PG GP+ GP G P G P G G
Sbjct: 339 PGLPGPPGLPGIGKPGFPGPK-GDRGMGGVPGALGPRGEKGPIGA--PGIGGPPGEPGLP 395
Query: 287 ---SGYGPQGDYGQQG-------YGPQGAP 306
GP G G G GPQG P
Sbjct: 396 GIPGPMGPPGAIGFPGPKGEGGIVGPQGPP 425
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/99 (36%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGDAYGDAGY-GQ-GPGGY-GPQDSYGPQGGYQPDYGQPAG 283
G P + PG P PG A G+ G G+ GP G GPQ GP G P G+P G
Sbjct: 156 GVGKPGMPGMPGKPGAMGMPG-AKGEIGQKGEIGPMGIPGPQGPPGPHG--LPGIGKPGG 212
Query: 284 SGGSGY-GPQGDYG---------------QQGYGPQGAP 306
G G GP+GD G +G+G GAP
Sbjct: 213 PGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP 251
Score = 33.5 bits (75), Expect = 0.25
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYG--QPAGSGGSGYGP 291
PPG P P G+AG PG G GP+G G D G P G G G GP
Sbjct: 448 PPGM-RGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIG-GP 505
Query: 292 QGDYGQQGY-GPQGAP 306
G G G GP+G P
Sbjct: 506 SGPIGPPGIPGPKGEP 521
Score = 29.3 bits (64), Expect = 4.7
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 231 PFLRAPPGAP----------EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQ 280
P R PPG P + +P P Y G PG G + G G + + GQ
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGP-QGYPGVGKPGMPGMPGKPGAMGMPGA-KGEIGQ 183
Query: 281 PAGSGGSGY----GPQGDYGQQGYGPQGAP 306
G G GP G +G G G G P
Sbjct: 184 KGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/90 (38%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 231 PFLRAPPGAPE--KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGG-- 286
P L PPG P K PG GD G G PG GP+ GP G P G P G G
Sbjct: 339 PGLPGPPGLPGIGKPGFPGPK-GDRGMGGVPGALGPRGEKGPIGA--PGIGGPPGEPGLP 395
Query: 287 ---SGYGPQGDYGQQG-------YGPQGAP 306
GP G G G GPQG P
Sbjct: 396 GIPGPMGPPGAIGFPGPKGEGGIVGPQGPP 425
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/99 (36%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGDAYGDAGY-GQ-GPGGY-GPQDSYGPQGGYQPDYGQPAG 283
G P + PG P PG A G+ G G+ GP G GPQ GP G P G+P G
Sbjct: 156 GVGKPGMPGMPGKPGAMGMPG-AKGEIGQKGEIGPMGIPGPQGPPGPHG--LPGIGKPGG 212
Query: 284 SGGSGY-GPQGDYG---------------QQGYGPQGAP 306
G G GP+GD G +G+G GAP
Sbjct: 213 PGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAP 251
Score = 33.5 bits (75), Expect = 0.25
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYG--QPAGSGGSGYGP 291
PPG P P G+AG PG G GP+G G D G P G G G GP
Sbjct: 448 PPGM-RGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIG-GP 505
Query: 292 QGDYGQQGY-GPQGAP 306
G G G GP+G P
Sbjct: 506 SGPIGPPGIPGPKGEP 521
Score = 29.3 bits (64), Expect = 4.7
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 231 PFLRAPPGAP----------EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQ 280
P R PPG P + +P P Y G PG G + G G + + GQ
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGP-QGYPGVGKPGMPGMPGKPGAMGMPGA-KGEIGQ 183
Query: 281 PAGSGGSGY----GPQGDYGQQGYGPQGAP 306
G G GP G +G G G G P
Sbjct: 184 KGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 42.4 bits (98), Expect = 5e-04
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGY----GP 291
PPG P PG G G PG GP GP+G G P G G GP
Sbjct: 297 PPGPPGPMGPPGPP-GPTGVPGSPGHIGPPGPTGPKG----ISGHPGEKGERGLRGEPGP 351
Query: 292 QGDYGQQGY-GPQGAP 306
QG GQ+G GP+G P
Sbjct: 352 QGSAGQRGEPGPKGDP 367
Score = 32.7 bits (73), Expect = 0.43
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 233 LRAPPG--APEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGG---- 286
+R PPG P P A G G PG GP GP P + + + G
Sbjct: 221 MRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLS 280
Query: 287 ------SGYGPQGDYGQQG-YGPQGAP 306
+ + PQG G G GP G P
Sbjct: 281 NTFTETNNHWPQGPTGPPGPPGPMGPP 307
Score = 30.0 bits (66), Expect = 2.8
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 228 WAAPFLRAPPGAPEKQ--------PAPGDAYGDAGYGQGPGGY-GPQDSYGPQGGYQPDY 278
W P + PG Q P P GDAG +GP G GP GP G P
Sbjct: 180 WGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAG-SRGPMGMRGPPGPQGPPG--SPGR 236
Query: 279 GQPAGSGGSGYGPQGDYGQQGYGPQGAP 306
G+ G GP G G GP G P
Sbjct: 237 AGAVGTPGE-RGPPGPPGPP--GPPGPP 261
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 42.0 bits (97), Expect = 7e-04
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 247 GDAYGDAGYGQGPGG-YGPQDSY---GPQGGYQPDYGQPAGSGGSGYGPQGDYGQ 297
G +YG GYG G GG YG SY G +G YG G GG YG G G+
Sbjct: 503 GGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSGR 557
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQG 304
G A G YG GGYG G GG G G G GYG G YG G
Sbjct: 498 GGAGGGGSYGS--GGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSG 553
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 42.0 bits (97), Expect = 7e-04
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY---- 289
PPG P +Q PG A G G PG G GP G G+ + G P +GG G
Sbjct: 861 PPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 919
Query: 290 ------GPQGDYGQQGYGPQGAP 306
GP G G++G G P
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGP 942
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 231 PFLRAPPGAPEKQPAPGDA--YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG 288
P + PPG P K PG G+ G+ G GP GPQG G+ G G
Sbjct: 802 PGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGA----AGETGPMGERG 857
Query: 289 Y-GPQGDYGQQGY-------------GPQGAP 306
+ GP G G+QG GP GAP
Sbjct: 858 HPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 889
Score = 37.7 bits (86), Expect = 0.013
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 236 PPGAPEKQPAPGDA-----YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
PPG Q PG + GD G PG GP+ GP G P G P G G G
Sbjct: 1065 PPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ-GPPGGVGN--LG 1121
Query: 291 PQGDYGQQGY----GPQGAP 306
P G+ G+ G G QG P
Sbjct: 1122 PPGEKGEPGESGSPGIQGEP 1141
Score = 36.6 bits (83), Expect = 0.030
Identities = 34/77 (44%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 236 PPGAPEKQ-PA-----PGDAYGDAGYGQGPGGYGPQDSYGPQG-GYQPDYGQPAGSGGSG 288
PPGAP K PA PG+ G G GPG G + GP G P AGSGG
Sbjct: 885 PPGAPGKDGPAGLRGFPGER-GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP- 942
Query: 289 YGPQGDYGQQGYGPQGA 305
GP G G Q GP GA
Sbjct: 943 IGPPGRPGPQ--GPPGA 957
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 225 ETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGS 284
ETG P P P P A G G G G GP G G + G P
Sbjct: 1083 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG----ESGSPGIQ 1138
Query: 285 GGSGY-GPQGDYGQQG-YGPQGAP 306
G G GP+G+ G++G G G P
Sbjct: 1139 GEPGVKGPRGERGEKGESGQPGEP 1162
Score = 36.6 bits (83), Expect = 0.030
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 234 RAPPGAPEKQPAPGD--AYGDAGYGQGPGGYGPQDSYGPQGGYQPD--YGQPAGSGGSGY 289
R P G+P + G A GD G PG GP GP G PD G P G G
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR 1293
Query: 290 -GPQGDYGQQG-YGPQGAP 306
G G G G GP G P
Sbjct: 1294 PGATGQAGPPGPVGPPGLP 1312
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + GD G+ G PG GP+ GP+G P P G G GPQG G
Sbjct: 496 PGPPGEDGERGDD-GEIGPRGLPGESGPRGLLGPKG--PPGIPGPPGVRGMD-GPQGPKG 551
Query: 297 QQGYGPQGAP 306
GPQG P
Sbjct: 552 --SLGPQGEP 559
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/72 (41%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGP-GGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
P P P P G G QGP G GPQ GP G G P G GPQG
Sbjct: 528 PKGPPGIPGPPGVRGMDG-PQGPKGSLGPQGEPGPPG----QQGTPGTQGLP--GPQGAI 580
Query: 296 GQQG-YGPQGAP 306
G G GPQG P
Sbjct: 581 GPHGEKGPQGKP 592
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 237 PGAPEKQPAPGDAYGDAG--YGQGPGGY----GPQDSYGPQG--------GYQPDYGQPA 282
PG P P P GD G GP G+ GP GP+G G + GQP
Sbjct: 1159 PGEPGP-PGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG 1217
Query: 283 GSGGSG-YGPQGDYGQQGYGPQGAPTSFSNQ 312
G +G GP G G++ GP G+P S Q
Sbjct: 1218 SPGPTGENGPPGPLGKR--GPAGSPGSEGRQ 1246
Score = 35.0 bits (79), Expect = 0.086
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG------- 288
PPG + G+ GD G G G GP G P GQP +G G
Sbjct: 990 PPGVAGEDGDKGEV-GDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGARGP 1047
Query: 289 ---YGPQGDYGQQGY-GPQG 304
+G +GD G +G+ GP G
Sbjct: 1048 QGHFGAKGDEGTRGFNGPPG 1067
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 226 TGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGP------QDSYGPQG--GYQPD 277
+G + P P P Q P A G +G GG GP + GPQG G+
Sbjct: 745 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 804
Query: 278 YGQPAGSGGSGY----GPQGDYGQQG-YGPQGAP 306
G P G G G +G+ G QG GP G P
Sbjct: 805 KGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPP 838
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQGDY 295
PGA ++ A G + G +G G GP+ GP+G G SGG G +GP G+
Sbjct: 733 PGASGEKGARGLS-GKSGPRGERGPTGPRGQRGPRGATGKS-GAKGTSGGDGPHGPPGER 790
Query: 296 GQQG-YGPQGAP 306
G G GP G P
Sbjct: 791 GLPGPQGPNGFP 802
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 230 APFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----------GYQPDY 278
+P ++ PG P G+ G PG GP GP G G+ D
Sbjct: 1134 SPGIQGEPGVK----GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1189
Query: 279 GQPAGSGGSGY-GPQGDYGQQGY-GPQGAP 306
G P G G G +GD G+ G G G+P
Sbjct: 1190 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1219
Score = 32.3 bits (72), Expect = 0.56
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 237 PGAPEKQPAPGD--------AYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGG 286
PG P +Q G A G+ G G GP+ GP G G + G SG
Sbjct: 715 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGA 774
Query: 287 SGY----GPQGDYGQQGY-GPQGAPTSF 309
G GP G G++G GPQG P F
Sbjct: 775 KGTSGGDGPHGPPGERGLPGPQG-PNGF 801
Score = 32.0 bits (71), Expect = 0.73
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 233 LRAPPGAPEKQ-----PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPA-GSGG 286
L PPG ++ P P + G G PG GP GP G P + A G+ G
Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1391
Query: 287 SGYGPQGDYGQQGYGPQGAP 306
G GP+G+ G Q GP G P
Sbjct: 1392 PG-GPKGEKGVQ--GPPGHP 1408
Score = 31.6 bits (70), Expect = 0.95
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 233 LRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
LR PPG +P P G G G GPQ GPQG G G+ +G G
Sbjct: 399 LRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 458
Query: 289 -YGPQGDYGQQG 299
G GD G +G
Sbjct: 459 ARGMPGDPGVKG 470
Score = 31.6 bits (70), Expect = 0.95
Identities = 32/87 (36%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 236 PPG--APEKQP-APGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG-Y 289
PPG P Q A GD D GQ PG GP GP G G + G P G G
Sbjct: 1191 PPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 290 GPQGDYGQQG----------YGPQGAP 306
G +GD G G GP G P
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKP 1276
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/75 (37%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
PPG P P A G G PG GPQ G G + G P G GP G
Sbjct: 924 PPG-PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG----EKGVPGEKG--PIGPTGRD 976
Query: 296 GQQG----YGPQGAP 306
G QG GP G P
Sbjct: 977 GVQGPVGLPGPAGPP 991
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 42.0 bits (97), Expect = 7e-04
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY---- 289
PPG P +Q PG A G G PG G GP G G+ + G P +GG G
Sbjct: 840 PPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 898
Query: 290 ------GPQGDYGQQGYGPQGAP 306
GP G G++G G P
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGP 921
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 231 PFLRAPPGAPEKQPAPGDA--YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG 288
P + PPG P K PG G+ G+ G GP GPQG G+ G G
Sbjct: 781 PGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGA----AGETGPMGERG 836
Query: 289 Y-GPQGDYGQQGY-------------GPQGAP 306
+ GP G G+QG GP GAP
Sbjct: 837 HPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 868
Score = 37.7 bits (86), Expect = 0.013
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 236 PPGAPEKQPAPGDA-----YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
PPG Q PG + GD G PG GP+ GP G P G P G G G
Sbjct: 1044 PPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ-GPPGGVGN--LG 1100
Query: 291 PQGDYGQQGY----GPQGAP 306
P G+ G+ G G QG P
Sbjct: 1101 PPGEKGEPGESGSPGIQGEP 1120
Score = 36.6 bits (83), Expect = 0.030
Identities = 34/77 (44%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 236 PPGAPEKQ-PA-----PGDAYGDAGYGQGPGGYGPQDSYGPQG-GYQPDYGQPAGSGGSG 288
PPGAP K PA PG+ G G GPG G + GP G P AGSGG
Sbjct: 864 PPGAPGKDGPAGLRGFPGER-GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP- 921
Query: 289 YGPQGDYGQQGYGPQGA 305
GP G G Q GP GA
Sbjct: 922 IGPPGRPGPQ--GPPGA 936
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 225 ETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGS 284
ETG P P P P A G G G G GP G G + G P
Sbjct: 1062 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG----ESGSPGIQ 1117
Query: 285 GGSGY-GPQGDYGQQG-YGPQGAP 306
G G GP+G+ G++G G G P
Sbjct: 1118 GEPGVKGPRGERGEKGESGQPGEP 1141
Score = 36.6 bits (83), Expect = 0.030
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 234 RAPPGAPEKQPAPGD--AYGDAGYGQGPGGYGPQDSYGPQGGYQPD--YGQPAGSGGSGY 289
R P G+P + G A GD G PG GP GP G PD G P G G
Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR 1272
Query: 290 -GPQGDYGQQG-YGPQGAP 306
G G G G GP G P
Sbjct: 1273 PGATGQAGPPGPVGPPGLP 1291
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + GD G+ G PG GP+ GP+G P P G G GPQG G
Sbjct: 475 PGPPGEDGERGDD-GEIGPRGLPGESGPRGLLGPKG--PPGIPGPPGVRGMD-GPQGPKG 530
Query: 297 QQGYGPQGAP 306
GPQG P
Sbjct: 531 --SLGPQGEP 538
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/72 (41%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGP-GGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
P P P P G G QGP G GPQ GP G G P G GPQG
Sbjct: 507 PKGPPGIPGPPGVRGMDG-PQGPKGSLGPQGEPGPPG----QQGTPGTQGLP--GPQGAI 559
Query: 296 GQQG-YGPQGAP 306
G G GPQG P
Sbjct: 560 GPHGEKGPQGKP 571
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 237 PGAPEKQPAPGDAYGDAG--YGQGPGGY----GPQDSYGPQG--------GYQPDYGQPA 282
PG P P P GD G GP G+ GP GP+G G + GQP
Sbjct: 1138 PGEPGP-PGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG 1196
Query: 283 GSGGSG-YGPQGDYGQQGYGPQGAPTSFSNQ 312
G +G GP G G++ GP G+P S Q
Sbjct: 1197 SPGPTGENGPPGPLGKR--GPAGSPGSEGRQ 1225
Score = 35.0 bits (79), Expect = 0.086
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG------- 288
PPG + G+ GD G G G GP G P GQP +G G
Sbjct: 969 PPGVAGEDGDKGEV-GDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGARGP 1026
Query: 289 ---YGPQGDYGQQGY-GPQG 304
+G +GD G +G+ GP G
Sbjct: 1027 QGHFGAKGDEGTRGFNGPPG 1046
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 226 TGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGP------QDSYGPQG--GYQPD 277
+G + P P P Q P A G +G GG GP + GPQG G+
Sbjct: 724 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 783
Query: 278 YGQPAGSGGSGY----GPQGDYGQQG-YGPQGAP 306
G P G G G +G+ G QG GP G P
Sbjct: 784 KGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPP 817
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQGDY 295
PGA ++ A G + G +G G GP+ GP+G G SGG G +GP G+
Sbjct: 712 PGASGEKGARGLS-GKSGPRGERGPTGPRGQRGPRGATGKS-GAKGTSGGDGPHGPPGER 769
Query: 296 GQQG-YGPQGAP 306
G G GP G P
Sbjct: 770 GLPGPQGPNGFP 781
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 230 APFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----------GYQPDY 278
+P ++ PG P G+ G PG GP GP G G+ D
Sbjct: 1113 SPGIQGEPGVK----GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1168
Query: 279 GQPAGSGGSGY-GPQGDYGQQGY-GPQGAP 306
G P G G G +GD G+ G G G+P
Sbjct: 1169 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1198
Score = 32.3 bits (72), Expect = 0.56
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 237 PGAPEKQPAPGD--------AYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGG 286
PG P +Q G A G+ G G GP+ GP G G + G SG
Sbjct: 694 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGA 753
Query: 287 SGY----GPQGDYGQQGY-GPQGAPTSF 309
G GP G G++G GPQG P F
Sbjct: 754 KGTSGGDGPHGPPGERGLPGPQG-PNGF 780
Score = 32.0 bits (71), Expect = 0.73
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 233 LRAPPGAPEKQ-----PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPA-GSGG 286
L PPG ++ P P + G G PG GP GP G P + A G+ G
Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1370
Query: 287 SGYGPQGDYGQQGYGPQGAP 306
G GP+G+ G Q GP G P
Sbjct: 1371 PG-GPKGEKGVQ--GPPGHP 1387
Score = 31.6 bits (70), Expect = 0.95
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 233 LRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
LR PPG +P P G G G GPQ GPQG G G+ +G G
Sbjct: 378 LRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 437
Query: 289 -YGPQGDYGQQG 299
G GD G +G
Sbjct: 438 ARGMPGDPGVKG 449
Score = 31.6 bits (70), Expect = 0.95
Identities = 32/87 (36%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 236 PPG--APEKQP-APGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG-Y 289
PPG P Q A GD D GQ PG GP GP G G + G P G G
Sbjct: 1170 PPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 290 GPQGDYGQQG----------YGPQGAP 306
G +GD G G GP G P
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKP 1255
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/75 (37%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
PPG P P A G G PG GPQ G G + G P G GP G
Sbjct: 903 PPG-PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG----EKGVPGEKG--PIGPTGRD 955
Query: 296 GQQG----YGPQGAP 306
G QG GP G P
Sbjct: 956 GVQGPVGLPGPAGPP 970
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 42.0 bits (97), Expect = 7e-04
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGY---- 289
PPG P +Q PG A G G PG G GP G G+ + G P +GG G
Sbjct: 947 PPGPPGEQGLPGTA-GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 1005
Query: 290 ------GPQGDYGQQGYGPQGAP 306
GP G G++G G P
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGP 1028
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 231 PFLRAPPGAPEKQPAPGDA--YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG 288
P + PPG P K PG G+ G+ G GP GPQG G+ G G
Sbjct: 888 PGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGA----AGETGPMGERG 943
Query: 289 Y-GPQGDYGQQGY-------------GPQGAP 306
+ GP G G+QG GP GAP
Sbjct: 944 HPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 975
Score = 37.7 bits (86), Expect = 0.013
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 236 PPGAPEKQPAPGDA-----YGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
PPG Q PG + GD G PG GP+ GP G P G P G G G
Sbjct: 1151 PPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ-GPPGGVGN--LG 1207
Query: 291 PQGDYGQQGY----GPQGAP 306
P G+ G+ G G QG P
Sbjct: 1208 PPGEKGEPGESGSPGIQGEP 1227
Score = 36.6 bits (83), Expect = 0.030
Identities = 34/77 (44%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 236 PPGAPEKQ-PA-----PGDAYGDAGYGQGPGGYGPQDSYGPQG-GYQPDYGQPAGSGGSG 288
PPGAP K PA PG+ G G GPG G + GP G P AGSGG
Sbjct: 971 PPGAPGKDGPAGLRGFPGER-GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP- 1028
Query: 289 YGPQGDYGQQGYGPQGA 305
GP G G Q GP GA
Sbjct: 1029 IGPPGRPGPQ--GPPGA 1043
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 225 ETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGS 284
ETG P P P P A G G G G GP G G + G P
Sbjct: 1169 ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG----ESGSPGIQ 1224
Query: 285 GGSGY-GPQGDYGQQG-YGPQGAP 306
G G GP+G+ G++G G G P
Sbjct: 1225 GEPGVKGPRGERGEKGESGQPGEP 1248
Score = 36.6 bits (83), Expect = 0.030
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 234 RAPPGAPEKQPAPGD--AYGDAGYGQGPGGYGPQDSYGPQGGYQPD--YGQPAGSGGSGY 289
R P G+P + G A GD G PG GP GP G PD G P G G
Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR 1379
Query: 290 -GPQGDYGQQG-YGPQGAP 306
G G G G GP G P
Sbjct: 1380 PGATGQAGPPGPVGPPGLP 1398
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG 296
PG P + GD G+ G PG GP+ GP+G P P G G GPQG G
Sbjct: 582 PGPPGEDGERGDD-GEIGPRGLPGESGPRGLLGPKG--PPGIPGPPGVRGMD-GPQGPKG 637
Query: 297 QQGYGPQGAP 306
GPQG P
Sbjct: 638 --SLGPQGEP 645
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/72 (41%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGP-GGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
P P P P G G QGP G GPQ GP G G P G GPQG
Sbjct: 614 PKGPPGIPGPPGVRGMDG-PQGPKGSLGPQGEPGPPG----QQGTPGTQGLP--GPQGAI 666
Query: 296 GQQG-YGPQGAP 306
G G GPQG P
Sbjct: 667 GPHGEKGPQGKP 678
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 237 PGAPEKQPAPGDAYGDAG--YGQGPGGY----GPQDSYGPQG--------GYQPDYGQPA 282
PG P P P GD G GP G+ GP GP+G G + GQP
Sbjct: 1245 PGEPGP-PGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG 1303
Query: 283 GSGGSG-YGPQGDYGQQGYGPQGAPTSFSNQ 312
G +G GP G G++ GP G+P S Q
Sbjct: 1304 SPGPTGENGPPGPLGKR--GPAGSPGSEGRQ 1332
Score = 35.0 bits (79), Expect = 0.086
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG------- 288
PPG + G+ GD G G G GP G P GQP +G G
Sbjct: 1076 PPGVAGEDGDKGEV-GDPGQKGTKGNKGEHGPPGPPGPIGP-VGQPGAAGADGEPGARGP 1133
Query: 289 ---YGPQGDYGQQGY-GPQG 304
+G +GD G +G+ GP G
Sbjct: 1134 QGHFGAKGDEGTRGFNGPPG 1153
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 226 TGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGP------QDSYGPQG--GYQPD 277
+G + P P P Q P A G +G GG GP + GPQG G+
Sbjct: 831 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 890
Query: 278 YGQPAGSGGSGY----GPQGDYGQQG-YGPQGAP 306
G P G G G +G+ G QG GP G P
Sbjct: 891 KGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPP 924
Score = 33.9 bits (76), Expect = 0.19
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSG-YGPQGDY 295
PGA ++ A G + G +G G GP+ GP+G G SGG G +GP G+
Sbjct: 819 PGASGEKGARGLS-GKSGPRGERGPTGPRGQRGPRGATGKS-GAKGTSGGDGPHGPPGER 876
Query: 296 GQQG-YGPQGAP 306
G G GP G P
Sbjct: 877 GLPGPQGPNGFP 888
Score = 32.7 bits (73), Expect = 0.43
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 230 APFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-----------GYQPDY 278
+P ++ PG P G+ G PG GP GP G G+ D
Sbjct: 1220 SPGIQGEPGVK----GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1275
Query: 279 GQPAGSGGSGY-GPQGDYGQQGY-GPQGAP 306
G P G G G +GD G+ G G G+P
Sbjct: 1276 GPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1305
Score = 32.3 bits (72), Expect = 0.56
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 237 PGAPEKQPAPGD--------AYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGG 286
PG P +Q G A G+ G G GP+ GP G G + G SG
Sbjct: 801 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGA 860
Query: 287 SGY----GPQGDYGQQGY-GPQGAPTSF 309
G GP G G++G GPQG P F
Sbjct: 861 KGTSGGDGPHGPPGERGLPGPQG-PNGF 887
Score = 32.0 bits (71), Expect = 0.73
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 233 LRAPPGAPEKQ-----PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPA-GSGG 286
L PPG ++ P P + G G PG GP GP G P + A G+ G
Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1477
Query: 287 SGYGPQGDYGQQGYGPQGAP 306
G GP+G+ G Q GP G P
Sbjct: 1478 PG-GPKGEKGVQ--GPPGHP 1494
Score = 31.6 bits (70), Expect = 0.95
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 233 LRAPPGAP--EKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
LR PPG +P P G G G GPQ GPQG G G+ +G G
Sbjct: 485 LRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 544
Query: 289 -YGPQGDYGQQG 299
G GD G +G
Sbjct: 545 ARGMPGDPGVKG 556
Score = 31.6 bits (70), Expect = 0.95
Identities = 32/87 (36%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 236 PPG--APEKQP-APGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG-Y 289
PPG P Q A GD D GQ PG GP GP G G + G P G G
Sbjct: 1277 PPGEGGPRGQDGAKGDRGEDGEPGQ-PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 290 GPQGDYGQQG----------YGPQGAP 306
G +GD G G GP G P
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKP 1362
Score = 30.4 bits (67), Expect = 2.1
Identities = 28/75 (37%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDY 295
PPG P P A G G PG GPQ G G + G P G GP G
Sbjct: 1010 PPG-PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG----EKGVPGEKG--PIGPTGRD 1062
Query: 296 GQQG----YGPQGAP 306
G QG GP G P
Sbjct: 1063 GVQGPVGLPGPAGPP 1077
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 251 GDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQGA 305
G+ G G+G GG+G D++G G + G GG GYG GD G G+G G+
Sbjct: 200 GNFGGGRG-GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD-GYNGFGNDGS 252
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 248 DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQG 299
D +G G G GG+G G GG Y G+ GS +G G Y G
Sbjct: 214 DNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY-NGFGNDGSNFGGGGSYNDFG 264
Score = 29.3 bits (64), Expect = 4.7
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSYGPQGGY---QPDYGQPAGS--GGSGYGPQGDYGQQ--- 298
GD Y G+G +G SY G Y ++G G GG GP G GQ
Sbjct: 241 GDGY--NGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK 298
Query: 299 -----GYGPQGAPTSFSN 311
GYG + +S+ +
Sbjct: 299 PRNQGGYGGSSSSSSYGS 316
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 41.6 bits (96), Expect = 0.001
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 243 QPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGY--QPDYGQPAGSGGSGYGPQGDYGQ 297
QP G YG YG Q SY P GY Q Y +G GG G G G+YGQ
Sbjct: 124 QPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGG-GGGGNYGQ 179
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 238 GAPEKQPAPG---DAYGDAGYGQGPGGYGPQDSY------GPQGGYQPDYGQPAGSGGSG 288
G+ +QP+ G +YG P GYG Q+ Y G GG +YGQ S SG
Sbjct: 128 GSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSG 187
Query: 289 YGPQGDYGQQGYGPQGAPTSFSNQ 312
G G YG Q G + Q
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQ 211
Score = 39.3 bits (90), Expect = 0.005
Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGP-QDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PP +Q + G G G G G YG Q S GG YG SGG G G
Sbjct: 151 PPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGG---SGG 207
Query: 295 YGQQGYGPQG 304
YGQQ G +G
Sbjct: 208 YGQQDRGGRG 217
Score = 37.7 bits (86), Expect = 0.013
Identities = 27/61 (44%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 253 AGYGQGPGGYGPQDSYGPQGGYQPDYGQP-------AGSGGSGYGPQGDYGQQ--GYGPQ 303
+G G G GGYG QD G GG YGQ GSGG G G G Y + GY P+
Sbjct: 186 SGGGSG-GGYGNQDQSG--GGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPR 242
Query: 304 G 304
G
Sbjct: 243 G 243
Score = 33.5 bits (75), Expect = 0.25
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 252 DAGYG--QGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQGAPTSF 309
+ GYG P GYG YG Q YGQ + G G P YG +S+
Sbjct: 63 NTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSY 122
Score = 32.7 bits (73), Expect = 0.43
Identities = 34/98 (34%), Positives = 37/98 (37%), Gaps = 27/98 (27%)
Query: 238 GAPEKQPAPG------DAYGD---AGYGQGP--GGYGPQDSYGPQGGYQPDYGQPAGSGG 286
GA QP G YG +GY Q GYG Q SY G Q + G S
Sbjct: 15 GAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYG-QSSYSSYGQSQ-NTGYGTQSTP 72
Query: 287 SGYGPQGDYGQQ--------------GYGPQGAPTSFS 310
GYG G YG GYG Q AP+S S
Sbjct: 73 QGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTS 110
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 243 QPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG--QQGY 300
Q + G GYGQ P SYG YGQP Y Q YG QQ Y
Sbjct: 88 QSSYGQQSSYPGYGQQPAPSSTSGSYG-SSSQSSSYGQPQ---SGSYSQQPSYGGQQQSY 143
Query: 301 GPQ 303
G Q
Sbjct: 144 GQQ 146
Score = 31.2 bits (69), Expect = 1.2
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 242 KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYG---QQ 298
K P P G G G YG D G +GGY D G G GG G +G G +
Sbjct: 448 KAPKPDGPGGGPGGSHMGGNYG-DDRRGGRGGY--DRGGYRGRGGDRGGFRGGRGGGDRG 504
Query: 299 GYGP 302
G+GP
Sbjct: 505 GFGP 508
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 249 AYGDAGYGQGPG-GYGPQDS--YGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQ---GYGP 302
+YG Y PG GY Q S YG Q Y Q + G G YGQ GYG
Sbjct: 13 SYG--AYPTQPGQGYSQQSSQPYGQQS--YSGYSQSTDTSGYGQSSYSSYGQSQNTGYGT 68
Query: 303 QGAPTSFSN 311
Q P + +
Sbjct: 69 QSTPQGYGS 77
Score = 29.6 bits (65), Expect = 3.6
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 247 GDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQG 299
G G GY + GGY P+ G +GG G GS G+ G QG
Sbjct: 224 GGGGGGGGYNRSSGGYEPRGRGGGRGG----RGGMGGSDRGGFNKFGGPRDQG 272
Score = 28.5 bits (62), Expect = 8.0
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 254 GYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQG 304
G G G GG G G +GGY G GGSG G +G + G G G
Sbjct: 378 GGGNGRGGRGRGGPMG-RGGY--------GGGGSGGGGRGGFPSGGGGGGG 419
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 41.6 bits (96), Expect = 0.001
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 237 PGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG----GYQPDYGQPAGSGGSG-YGP 291
P P P P G GYG PG G GP G G G P G G YGP
Sbjct: 67 PAGPRGHPGPSGPPGKPGYG-SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGP 125
Query: 292 QGDYGQQGY-GPQGAP 306
+GD G G GP+G P
Sbjct: 126 KGDVGPAGLPGPRGPP 141
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 227 GWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP--------DY 278
G+ +P L+ PG P P P A G G PG G + YGP+G P
Sbjct: 84 GYGSPGLQGEPGLPGP-PGPS-AVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPP 141
Query: 279 GQPAGSGGSGYGPQGDYGQQGYGPQGAP 306
G P G +G G GQQ GP GAP
Sbjct: 142 GPPGIPGPAGISVPGKPGQQ--GPTGAP 167
Score = 38.9 bits (89), Expect = 0.006
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 234 RAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSGYGP 291
R P G P A G+ G AG PG GP + GPQG G +G P G + GP
Sbjct: 310 RGPAGLPGGPGAKGEQ-GPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGET--GP 366
Query: 292 QGDYGQQG-YGPQGAPTS 308
G G G G +G+P S
Sbjct: 367 AGPAGYPGAKGERGSPGS 384
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 230 APFLRAPPGAPE--KQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-GYQPDYGQPAGSGG 286
AP + PPG P K PG G+ G PGG G + GP G +P P G+ G
Sbjct: 286 APGIAGPPGPPGFGKPGLPG-LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMG 344
Query: 287 SGYGPQGDYGQQGY-GPQG 304
GP+G G G GP+G
Sbjct: 345 P-QGPKGIPGSHGLPGPKG 362
Score = 35.0 bits (79), Expect = 0.086
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPA------GS 284
P R PPG P PG A G + G+ PG GP + GP+G + + G P
Sbjct: 135 PGPRGPPGPPG---IPGPA-GISVPGK-PGQQGPTGAPGPRG-FPGEKGAPGVPGMNGQK 188
Query: 285 GGSGYGPQGDYGQQGY-GPQG 304
G GYG G G++G GPQG
Sbjct: 189 GEMGYGAPGRPGERGLPGPQG 209
Score = 33.5 bits (75), Expect = 0.25
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 234 RAPPGAPEKQ--PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDY-GQPAGSGGSGY- 289
+ P G P P P G AG PG G + S G G +P Y G+P G G
Sbjct: 346 QGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDG--KPGYPGKPGLDGPKGNP 403
Query: 290 ---GPQGDYGQQGYGPQGAP 306
GP+GD G GP G P
Sbjct: 404 GLPGPKGDPGVG--GPPGLP 421
Score = 32.3 bits (72), Expect = 0.56
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 236 PPGAPEKQ----PAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPD-YGQPAGSGGSGY- 289
PPG ++ P GD G+ G GP GP G P+ G+P +G G
Sbjct: 216 PPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQP 275
Query: 290 ---GPQGDYGQQGY-GPQGAP 306
G +G G G GP G P
Sbjct: 276 GIPGTKGLPGAPGIAGPPGPP 296
Score = 30.0 bits (66), Expect = 2.8
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGGSG 288
P L P G P P P GD G G PG GP G +G G+ + G G G
Sbjct: 394 PGLDGPKGNPGL-PGPK---GDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPG 449
Query: 289 -YGPQGDYGQQGY-GPQGAPTS 308
GP G G G+ G +G P S
Sbjct: 450 TRGPIGPPGIPGFPGSKGDPGS 471
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 236 PPGAPEKQPAPG-DAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PPG P +PG G G PGG GP GP G + + G P G GP+GD
Sbjct: 786 PPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPG-IKGEKGFPGFPGLDMPGPKGD 844
Query: 295 YGQQGY-------------GPQGAP 306
G QG G QGAP
Sbjct: 845 KGAQGLPGITGQSGLPGLPGQQGAP 869
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/77 (40%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 236 PPGAPEKQPA-PGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGY----G 290
PPG P PA P G AG+ GPG G G G P G P G G G
Sbjct: 602 PPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPG 661
Query: 291 PQGDYGQQGY-GPQGAP 306
PQGD G G G G P
Sbjct: 662 PQGDRGFPGTPGRPGLP 678
Score = 37.4 bits (85), Expect = 0.017
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 236 PPGAPEKQPAPGDAYG---------DAGYGQGPGGYGPQDSYGPQG-----GYQPDYGQP 281
PPG P + PG+ G + G+ PG GP G QG G+ G P
Sbjct: 149 PPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPP 208
Query: 282 AGSGGSG---------YGPQGDYGQQGY-GPQGAP 306
G G GP+GD G QG GP G P
Sbjct: 209 GPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVP 243
Score = 37.0 bits (84), Expect = 0.023
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 237 PGAPEKQPAPGDAY--GDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYGPQGD 294
PGA + + G+ G AG PG G Q GP G Q G P G + GP+GD
Sbjct: 1179 PGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGP-QGQPGLPGSPGHATEGPKGD 1237
Query: 295 YGQQGY-------GPQGAP 306
G QG GP G P
Sbjct: 1238 RGPQGQPGLPGLPGPMGPP 1256
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSG-GSGYGPQGD 294
P G P K G+ G G+ PG G GPQG + + G P G G GP G+
Sbjct: 285 PRGKPGKDGDKGEK-GSPGFPGEPGYPGLIGRQGPQGE-KGEAGPPGPPGIVIGTGPLGE 342
Query: 295 YGQQGY----GPQGAP 306
G++GY GP+G P
Sbjct: 343 KGERGYPGTPGPRGEP 358
Score = 36.2 bits (82), Expect = 0.039
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 231 PFLRAPPGAPEKQPAPG-DAY-GDAGYGQGPGGYGPQDSYGPQGGY-----QPDYGQPAG 283
P PG + +PG D + G G PG G + GP GG + D G P
Sbjct: 546 PGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGP 605
Query: 284 SGGSGYGPQGDYGQQGY-GPQGAP 306
G GP GD GQ G+ G G+P
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSP 629
Score = 35.0 bits (79), Expect = 0.086
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPAGSGGSGYG 290
P + P G P Q GD GD G PG G GP G Y G+P G G
Sbjct: 1313 PGFQGPKGLPGLQGIKGDQ-GDQGV---PGAKGLPGPPGPPGPYDIIKGEPGLPGPE--G 1366
Query: 291 PQGDYGQQGY-GPQG 304
P G G QG GP+G
Sbjct: 1367 PPGLKGLQGLPGPKG 1381
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 231 PFLRAPPGAPEKQPAPGDAYGDAGYG-QGP-GGYGPQDSYGPQG---------------- 272
P PPG P PG+ G G QGP G G Q GP G
Sbjct: 199 PGFTGPPGPPGPPGPPGEK-GQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATK 257
Query: 273 GYQPDYGQPAGSGGSGYGPQGDYGQQGYGPQGAP 306
G + G+P G G G +G+ G+ GP+G P
Sbjct: 258 GEKGQKGEPGFQGMPGVGEKGEPGKP--GPRGKP 289
Score = 32.0 bits (71), Expect = 0.73
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 237 PGAPEK--------QPAPGDAYGDAGYGQGPGGYGPQDSYGPQG--GYQPDYGQPAGSGG 286
PG P K QP P G +G PG GP+ S G G G + G P G
Sbjct: 974 PGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGP 1033
Query: 287 SGY-GPQGDYGQQGYGPQGAP 306
G G GD G +G Q P
Sbjct: 1034 QGSPGLPGDKGAKGEKGQAGP 1054
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 233 LRAPPGAPEKQPAPGDAYGDAGYGQG-PGGYGPQDSYGPQGGYQPDYGQPAGSGGS---- 287
L PPG+P PG G G PG GP G Q G+ + G+ G S
Sbjct: 412 LPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPG-QPGFIGEIGEKGQKGESCLIC 470
Query: 288 ---GY----GPQGDYGQQGY-GPQGA 305
GY GPQG G+ G+ G GA
Sbjct: 471 DIDGYRGPPGPQGPPGEIGFPGQPGA 496
Score = 29.3 bits (64), Expect = 4.7
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 236 PPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQG-------GYQPDYGQPAGSGGSG 288
PPG P G G+ G PG GP+ GP+G P P +G G
Sbjct: 327 PPGPPGIVIGTGPL-GEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPG 385
Query: 289 Y-GPQGDYGQQGY------GPQG 304
+ G +G+ G +G+ GP G
Sbjct: 386 FPGERGEKGDRGFPGTSLPGPSG 408
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,240,142
Number of Sequences: 37866
Number of extensions: 809347
Number of successful extensions: 6848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 331
Number of HSP's that attempted gapping in prelim test: 3580
Number of HSP's gapped (non-prelim): 2358
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.