Guide to the Human Genome
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Name: SYPL1 Sequence: fasta or formatted (259aa) NCBI GI: 5803185
Description:

synaptophysin-like 1 isoform a

Referenced in:

Synapses

Other entries for this name:
alt prot [241aa] synaptophysin-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         19           2
 C cysteine            2.3          6           1
 D aspartate           2.7          7           1
 E glutamate           2.7          7           1
 F phenylalanine       6.9         18           1
 G glycine             7.3         19           2
 H histidine           1.2          3           1
 I isoleucine          7.3         19           2
 K lysine              4.6         12           3
 L leucine             9.7         25           3
 M methionine          1.9          5           1
 N asparagine          5.0         13           1
 P proline             6.6         17           3
 Q glutamine           3.1          8           1
 R arginine            2.3          6           1
 S serine              7.7         20           3
 T threonine           6.6         17           1
 V valine              8.1         21           2
 W tryptophan          2.3          6           1
 Y tyrosine            4.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptophysin-like 1 isoform a 
SYPL1                 0.933   synaptophysin-like 1 isoform b 
SYP                   0.362   synaptophysin 
SYNPR                 0.346   synaptoporin isoform 1 
SYPL2                 0.341   mitsugumin 29 
SYNPR                 0.315   synaptoporin isoform 2 
MCOLN2                0.012   mucolipin 2 
LSAMP                 0.010   limbic system-associated membrane protein 
ANO9                  0.010   tumor protein p53 inducible protein 5 
SYNGR3                0.008   synaptogyrin 3 
IGF2R                 0.006   insulin-like growth factor 2 receptor precursor [Ho...
SLC5A4                0.006   solute carrier family 5 (low affinity glucose cotran...
LOC100129053          0.006   PREDICTED: hypothetical protein 
LOC100129053          0.006   PREDICTED: hypothetical protein 
LOC100129053          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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