Guide to the Human Genome
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Name: C8orf47 Sequence: fasta or formatted (374aa) NCBI GI: 27734897
Description:

hypothetical protein LOC203111

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         34           2
 C cysteine            0.5          2           1
 D aspartate           3.7         14           1
 E glutamate          15.8         59           3
 F phenylalanine       1.3          5           1
 G glycine             8.8         33           2
 H histidine           1.3          5           1
 I isoleucine          2.4          9           1
 K lysine              6.4         24           3
 L leucine             6.7         25           2
 M methionine          1.9          7           1
 N asparagine          3.7         14           1
 P proline             8.3         31           2
 Q glutamine           7.0         26           2
 R arginine            2.9         11           1
 S serine              7.0         26           3
 T threonine           6.7         25           2
 V valine              6.1         23           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC203111 
RP1L1                 0.053   retinitis pigmentosa 1-like 1 
NASP                  0.042   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.042   nuclear autoantigenic sperm protein isoform 1 
AKAP12                0.034   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.034   A kinase (PRKA) anchor protein 12 isoform 2 
TCHHL1                0.032   trichohyalin-like 1 
CLIC6                 0.028   chloride intracellular channel 6 
CHD2                  0.028   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.028   chromodomain helicase DNA binding protein 2 isoform...
NEFM                  0.025   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.025   neurofilament, medium polypeptide 150kDa isoform 2 ...
NEFH                  0.025   neurofilament, heavy polypeptide 200kDa 
PALM3                 0.024   hypothetical protein LOC342979 
RPGR                  0.024   retinitis pigmentosa GTPase regulator isoform C [Hom...
TXNDC2                0.024   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.024   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.024   thioredoxin domain-containing 2 isoform 1 
FSCB                  0.024   fibrous sheath CABYR binding protein 
CIC                   0.024   capicua homolog 
CCDC96                0.024   coiled-coil domain containing 96 
DPCR1                 0.024   diffuse panbronchiolitis critical region 1 protein ...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform c ...
ZFHX3                 0.022   AT-binding transcription factor 1 
GOLIM4                0.022   golgi integral membrane protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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