Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PALM3 Sequence: fasta or formatted (673aa) NCBI GI: 222537747
Description:

hypothetical protein LOC342979

Referenced in:

Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         60           3
 C cysteine            0.9          6           2
 D aspartate           2.7         18           1
 E glutamate          18.7        126           4
 F phenylalanine       0.4          3           1
 G glycine            12.8         86           3
 H histidine           0.6          4           1
 I isoleucine          1.8         12           1
 K lysine              4.9         33           2
 L leucine             7.4         50           2
 M methionine          1.0          7           1
 N asparagine          1.0          7           1
 P proline             8.6         58           2
 Q glutamine           4.9         33           1
 R arginine            6.7         45           2
 S serine              7.0         47           2
 T threonine           4.2         28           1
 V valine              5.9         40           2
 W tryptophan          1.2          8           1
 Y tyrosine            0.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC342979 
RP1L1                 0.071   retinitis pigmentosa 1-like 1 
RPGR                  0.063   retinitis pigmentosa GTPase regulator isoform C [Hom...
NEFH                  0.039   neurofilament, heavy polypeptide 200kDa 
PALMD                 0.037   palmdelphin 
PALM2                 0.035   paralemmin 2 isoform b 
PALM2                 0.035   paralemmin 2 isoform a 
PALM2-AKAP2           0.035   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.035   PALM2-AKAP2 protein isoform 1 
PALM                  0.034   paralemmin isoform 2 
PALM                  0.034   paralemmin isoform 1 
APOB48R               0.033   apolipoprotein B48 receptor 
ARHGAP30              0.033   Rho GTPase activating protein 30 isoform 1 
CLIC6                 0.032   chloride intracellular channel 6 
SMTNL1                0.030   smoothelin-like 1 
SETD1A                0.030   SET domain containing 1A 
NEFM                  0.030   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.030   neurofilament, medium polypeptide 150kDa isoform 2 ...
KIAA1211              0.030   hypothetical protein LOC57482 
OGFR                  0.029   opioid growth factor receptor 
FSCB                  0.028   fibrous sheath CABYR binding protein 
PELP1                 0.027   proline, glutamic acid and leucine rich protein 1 [...
NSBP1                 0.025   nucleosomal binding protein 1 
NES                   0.025   nestin 
LOC100133599          0.025   PREDICTED: hypothetical protein 
SETD1B                0.024   SET domain containing 1B 
PNN                   0.024   pinin, desmosome associated protein 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
MYT1                  0.024   myelin transcription factor 1 
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press