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Search of human proteins with 27436895
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436895 tapasin isoform 2 precursor [Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436895 tapasin isoform 2 precursor [Homo sapiens] 614 e-176
gi|27436893 tapasin isoform 1 precursor [Homo sapiens] 595 e-170
gi|27436897 tapasin isoform 3 precursor [Homo sapiens] 595 e-170
gi|157739930 TAP binding protein-like [Homo sapiens] 45 1e-04
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 41 0.001
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 39 0.004
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 39 0.007
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 36 0.047
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 36 0.047
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|13994345 killer-specific secretory protein of 37 kDa precurso... 35 0.10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.10
gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 34 0.18
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 33 0.23
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.31
gi|194097411 transmembrane protein 119 [Homo sapiens] 33 0.40
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 32 0.52
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 32 0.52
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 32 0.52
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 32 0.52
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 32 0.52
gi|5031887 LIM domain containing preferred translocation partner... 32 0.68
gi|24797153 faciogenital dysplasia protein [Homo sapiens] 32 0.68
gi|148612879 polyhomeotic like 3 [Homo sapiens] 32 0.68
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 32 0.68
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 32 0.89
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 32 0.89
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 31 1.2
>gi|27436895 tapasin isoform 2 precursor [Homo sapiens]
Length = 299
Score = 614 bits (1584), Expect = e-176
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYSELGDRGLQG 299
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYSELGDRGLQG
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYSELGDRGLQG 299
>gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
Length = 448
Score = 595 bits (1533), Expect = e-170
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
Length = 412
Score = 595 bits (1533), Expect = e-170
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>gi|157739930 TAP binding protein-like [Homo sapiens]
Length = 468
Score = 44.7 bits (104), Expect = 1e-04
Identities = 73/313 (23%), Positives = 115/313 (36%), Gaps = 51/313 (16%)
Query: 6 LLLAVALGLATAVSAGPA---------VIECWFVEDASGKGLA-----KRPGALLLRQGP 51
LLL +AL A PA V++C+ +D + +G + +L+L+Q P
Sbjct: 9 LLLCLALSGAAETKPHPAEGQWRAVDVVLDCFLAKDGAHRGALASSEDRARASLVLKQVP 68
Query: 52 ----GEPPPRPDLDPELYLSVHDPAGALQAAFR--RYPRGAPAPH---------CEMSRF 96
G D L+ DP +A+ + P+ H CE+SR+
Sbjct: 69 VLDDGSLEDFTDFQGGT-LAQDDPPIIFEASVDLVQIPQAEALLHADCSGKEVTCEISRY 127
Query: 97 VPLPASAKWASGLTPAQNCPRALDGAWLMVSISSP-VLSLSSLLRPQPEPQQEPVLITMA 155
+ N + G + + + +P V +L P P
Sbjct: 128 FLQMTETTVKTAAWFMANMQVSGGGPSISLVMKTPRVTKNEALWHPTLNLPLSPQGTVRT 187
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
V V+T T + LG A LD F S+APG +EWR QH G+G
Sbjct: 188 AVEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQ 236
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHL 275
L+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 237 LVYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITT 287
Query: 276 PYLQGQVTLELAV 288
+ Q ++L +
Sbjct: 288 SLYRAQQIIQLNI 300
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 41.2 bits (95), Expect = 0.001
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 37 GLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRF 96
GL++ P LL P PPP P L P G+ QAAF P P
Sbjct: 426 GLSEPPQPLLPASAPSAPPPAPSLGP----------GSQQAAFGNPPALLQPPE------ 469
Query: 97 VPLPASAKWASG---LTPAQNCPRAL-DGAWLMVSISSPVLSLSSLLRPQPEPQQ--EPV 150
VP+P S ++A+ P P+ + G ++ S+ +++S + PQ EP+
Sbjct: 470 VPVPHSTQFAANHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPL 529
Query: 151 LITMATV------VLT---VLTHTPAPRVRLGQDALL 178
+ T+ VLT +T TP P + Q +L+
Sbjct: 530 PAMVQTLPLGANSVLTNNPTITITPTPNTAILQSSLV 566
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 39.3 bits (90), Expect = 0.004
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 44/241 (18%)
Query: 3 SLSLLLAVALGLATAVSAG----PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRP 58
S +LL +ALG V A P + + + G GL R G LL+R+G P P P
Sbjct: 77 SRALLRLLALGSGAWVRARAVRRPPALGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGP 136
Query: 59 D-----------LDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWAS 107
L P L+V + G + P P +S F + + +
Sbjct: 137 RVLETRPALQGLLGPGTRLAVTELRGRARLCPESGDSSRPPPPPVVSSFA-VSGTVRRLQ 195
Query: 108 G--------LTPAQNCPRAL---DGAWLMVS-----------------ISSPVLSLSSLL 139
G L +++C R L G W+ V+ + P LS L
Sbjct: 196 GVLGGTGDSLGVSRSCLRGLGLFQGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRL 255
Query: 140 RPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGP 199
P P EP+ +A V T+ + + +G+ + + P + + SL PGP
Sbjct: 256 GPGSGPLGEPLADGLALVPATLAFNLGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGP 315
Query: 200 P 200
P
Sbjct: 316 P 316
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 38.5 bits (88), Expect = 0.007
Identities = 52/204 (25%), Positives = 64/204 (31%), Gaps = 41/204 (20%)
Query: 35 GKGLAKRPGALLLRQGPGEPPPR--------------PDLDPELYLSVHDPAGALQAAFR 80
G+G R GAL GP PP PDL P + + D G+ Q F
Sbjct: 781 GRGRPGRAGALKAEAGPSAPPRALEGLRLPPMPWNVPPDLSPRVVDGIEDGCGSDQPKF- 839
Query: 81 RYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLR 140
+ G P C S P P SGL + P + + V LS +
Sbjct: 840 SFRVGQSGPECSSS---PSPGP---ESGLLTVPHGPSEARNTDTLDKLRQAVTELSEQVL 893
Query: 141 PQPEPQQEPVLITMATVVLTVLTHTPAPRVR-----------LGQDALLDL---SFAYMP 186
E Q L +VL P PR L Q +D S+ P
Sbjct: 894 QMREGLQS--LRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPLCVDTGASSYCLQP 951
Query: 187 PTSEAASSL----APGPPPFGLEW 206
P S PGPPP W
Sbjct: 952 PAGSVLSGTWPHPRPGPPPLMAPW 975
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.047
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.047
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.080
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P ++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLP 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|13994345 killer-specific secretory protein of 37 kDa precursor
[Homo sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.10
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 135 LSSLLRPQPEPQQE-----PVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTS 189
++S L+ PEP Q+ P L ATV LT T +LG+D++ +L A P T
Sbjct: 129 VTSSLKGSPEPNQQPEAGTPSLRPKATVKLTEAT-------QLGKDSMEELGKA-KPTTR 180
Query: 190 EAASSLAPGPPPFGLE 205
A PGP P G E
Sbjct: 181 PTAKPTQPGPRPGGNE 196
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 34.7 bits (78), Expect = 0.10
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 410 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 458
Query: 115 CP 116
P
Sbjct: 459 LP 460
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 34.7 bits (78), Expect = 0.10
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 964 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 1012
Query: 115 CP 116
P
Sbjct: 1013 LP 1014
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 34.7 bits (78), Expect = 0.10
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 964 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 1012
Query: 115 CP 116
P
Sbjct: 1013 LP 1014
>gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens]
Length = 1049
Score = 33.9 bits (76), Expect = 0.18
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 29 FVEDASGKGLAKRPGAL-LLRQGPGEP-PPRPDLDPELYLSVHDPAGALQAAFRRYPRGA 86
F+ AS L R L L+ GP P P P+ ++ H G+ A + PR
Sbjct: 777 FINKASNSVLQSRNAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAKTKDPPRYE 836
Query: 87 PAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQ 146
A S PLP + S Q D + I S +SL P P +
Sbjct: 837 EAIKQTRSTQAPLPEISNAHS-----QQMDDLFD-----ILIKSGEISLPIKEEPSPISK 886
Query: 147 QEPVLITMATVVLTVLTHTPAPRVRLGQDALLD 179
PV ++ T+ + + P P+V++ L+
Sbjct: 887 MRPVTASITTMPVNTVVSRPPPQVQMAPPVSLE 919
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 33.5 bits (75), Expect = 0.23
Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 53 EPPPRPDLDPELYLSV-HDPAGALQAAFRRYPRGA---PAPHCE----MSRFVP------ 98
+PPP+P DP LS ++ A +A R A P PH + M + P
Sbjct: 1295 QPPPKPKRDPNTRLSASYEAVSACLSAAREAANEALARPRPHSDDYSTMKKIPPRKPKRS 1354
Query: 99 ----LPASAKWASGLTPAQNCPRALDGAWLMV-SISSPVLSLSSLLRPQPEPQQEPVLIT 153
L S + SG P P GA V + +P +L P E EPV I
Sbjct: 1355 PNTKLSGSYEEISGSRPGDARPAGAPGAAARVLTPGTPQCALPPAAPPGDEDDSEPVYIE 1414
Query: 154 M 154
M
Sbjct: 1415 M 1415
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 33.1 bits (74), Expect = 0.31
Identities = 66/262 (25%), Positives = 87/262 (33%), Gaps = 65/262 (24%)
Query: 50 GPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRG---APAPHCEMSRFVPLPASAKWA 106
GP +PP RP P P G L A P A A E S +P P + +
Sbjct: 856 GPPQPPLRPQSQP--------PEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQ 907
Query: 107 SGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTP 166
P+Q ++ +P +L + P P P M T L P
Sbjct: 908 LQFPPSQGPHKS----------PTPPPTLHLVPEPAAPPPPPPRTFQMVTTPFPAL---P 954
Query: 167 APRVRL-----------------GQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQ 209
P+ L G A S + P TS AAS L G P G
Sbjct: 955 QPKALLERFHQVPSGIILQNKAGGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGTPTAPS 1014
Query: 210 HLGKGHLLLAATPGLNGQMPAAQEG--------AVAFAAWDDDEPWGPWTGNGTFW---- 257
H +AAT GL +PA + VA AA GP +G +
Sbjct: 1015 H-APAPAPMAAT-GLPPLLPAENKAFASNLPTLNVAKAASS-----GPGKPSGLQYESKL 1067
Query: 258 -----LPTVQPFQEGTYLATIH 274
PT+QP +E +L +H
Sbjct: 1068 SGLKKPPTLQPSKEACFLEHLH 1089
>gi|194097411 transmembrane protein 119 [Homo sapiens]
Length = 283
Score = 32.7 bits (73), Expect = 0.40
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 3 SLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPP-RPDLD 61
SL +LL + LG A A ++ F+ED +G G A+ A P PPP P L
Sbjct: 8 SLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSA----SSPSLPPPWTPALS 63
Query: 62 P 62
P
Sbjct: 64 P 64
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 32.3 bits (72), Expect = 0.52
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 51 PGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFV----PLPASAKWA 106
P +PPPRP P YL P L A R R +P P ++ R P P+
Sbjct: 786 PSQPPPRP---PPDYLRGGSPPAPLPAHLSRAARNSPGPGSQIERTESSRRPPPSRP--- 839
Query: 107 SGLTPAQNC 115
+ PA NC
Sbjct: 840 --IPPAPNC 846
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 32.3 bits (72), Expect = 0.52
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 43/157 (27%)
Query: 45 LLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAK 104
LL+ P PPP P + L+V P P P + VPLPA +
Sbjct: 763 LLIPTDPSSPPPCPPV-----LTVATP---------------PPP---LLPTVPLPAPSS 799
Query: 105 WASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTH 164
AS CP L A + P+LS + P P P EP++ +
Sbjct: 800 SAS----PHPCPSPLSNATAQSPL--PILSPTVSPSPSPIPPVEPLMSAAS--------- 844
Query: 165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
P P + S ++ S ++SS +P PPP
Sbjct: 845 -PGPPTLSSSSSSSSSSSSF----SSSSSSSSPSPPP 876
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 32.3 bits (72), Expect = 0.52
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 43/157 (27%)
Query: 45 LLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAK 104
LL+ P PPP P + L+V P P P + VPLPA +
Sbjct: 964 LLIPTDPSSPPPCPPV-----LTVATP---------------PPP---LLPTVPLPAPSS 1000
Query: 105 WASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTH 164
AS CP L A + P+LS + P P P EP++ +
Sbjct: 1001 SAS----PHPCPSPLSNATAQSPL--PILSPTVSPSPSPIPPVEPLMSAAS--------- 1045
Query: 165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
P P + S ++ S ++SS +P PPP
Sbjct: 1046 -PGPPTLSSSSSSSSSSSSF----SSSSSSSSPSPPP 1077
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 32.3 bits (72), Expect = 0.52
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 43/157 (27%)
Query: 45 LLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAK 104
LL+ P PPP P + L+V P P P + VPLPA +
Sbjct: 964 LLIPTDPSSPPPCPPV-----LTVATP---------------PPP---LLPTVPLPAPSS 1000
Query: 105 WASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTH 164
AS CP L A + P+LS + P P P EP++ +
Sbjct: 1001 SAS----PHPCPSPLSNATAQSPL--PILSPTVSPSPSPIPPVEPLMSAAS--------- 1045
Query: 165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
P P + S ++ S ++SS +P PPP
Sbjct: 1046 -PGPPTLSSSSSSSSSSSSF----SSSSSSSSPSPPP 1077
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 32.3 bits (72), Expect = 0.52
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 8 LAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRP------DLD 61
LA + A ++ GP +I + +AS G LLL G G PPP+P +
Sbjct: 328 LAASGSPAVLLNGGPVIINGLALGEASSLG------PLLLTGGGGAPPPQPSPQGASETK 381
Query: 62 PELYLSVHDPAGALQAAFRRYPR------GAPAPHC------EMSRFVPLPASA---KWA 106
L L L+ A P AP P +++ VP P +A
Sbjct: 382 TSLVLDPQTGEVRLEEAQSEAPETKGAQVAAPGPALGEEVLGPLAQVVPGPPTAATFPLP 441
Query: 107 SGLTPAQNCPRAL-----DGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTV 161
G PA P+ + G +S +SP+L+L PQ P + V + A L +
Sbjct: 442 PGPVPAVAAPQVVPLSPPPGYPTGLSPTSPLLNL-----PQVVPTSQVVTLPQAVGPLQL 496
Query: 162 LTHTPAPRVRLGQDA 176
L P V++ A
Sbjct: 497 LAAGPGSPVKVAAAA 511
Score = 28.5 bits (62), Expect = 7.5
Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 29/215 (13%)
Query: 14 LATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPP-----RPDLDPELYLSV 68
LAT + WF GA + G P R D E +
Sbjct: 234 LATLTGLSLTQVSNWFKNRRQRDRTGAGGGAPCKSESDGNPTTEDESSRSPEDLERGAAP 293
Query: 69 HDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPA---QNCPRALDGAWLM 125
A Q + G PAP C S + + S ASG +PA P ++G L
Sbjct: 294 VSAEAAAQGSIFLAGTGPPAP-CPASSSILVNGSFLAASG-SPAVLLNGGPVIINGLALG 351
Query: 126 VSIS-SPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLT------------------HTP 166
+ S P+L P P+P + T ++VL T
Sbjct: 352 EASSLGPLLLTGGGGAPPPQPSPQGASETKTSLVLDPQTGEVRLEEAQSEAPETKGAQVA 411
Query: 167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
AP LG++ L L+ P + A L PGP P
Sbjct: 412 APGPALGEEVLGPLAQVVPGPPTAATFPLPPGPVP 446
>gi|5031887 LIM domain containing preferred translocation partner in
lipoma [Homo sapiens]
Length = 612
Score = 32.0 bits (71), Expect = 0.68
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 52 GEPPPRPDLDPELYLSVHDPAG--------ALQAAFRRYPRGAPAPHCEMSRFVPLPASA 103
G PP P LD E + +P G +L A C S + P P +
Sbjct: 86 GNFPPPPPLDEEAFKVQGNPGGKTLEERRSSLDAEIDSLTSILADLECS-SPYKPRPPQS 144
Query: 104 KWASGLTPAQNCPRALDGAWLMVSISSPVLSLS--SLLRPQPEPQQEPV 150
S +P + P + G MV + P L+ + S L+PQP PQ P+
Sbjct: 145 STGSTASPPVSTP--VTGHKRMVIPNQPPLTATKKSTLKPQPAPQAGPI 191
>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
Length = 961
Score = 32.0 bits (71), Expect = 0.68
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 26/172 (15%)
Query: 35 GKGLAKRP-GALLLRQGPGEPPPRPDLDPELYLSVHDPAGAL--QAAFRRYPR-GAPAPH 90
G+ L P G LR PG P P P P + + ++ + PR P
Sbjct: 120 GQSLEPHPEGPQRLRSDPGPPTETPSQRPSPLKRAPGPKPQVPPKPSYLQMPRMPPPLEP 179
Query: 91 CEMSRFVPLPASAKWASGLTP-AQNCPRALDGAWLMVSIS-SPVLSLSSLLRPQPEP-QQ 147
PLPA + A GL P A+ P + + L+ PV+ S P P P
Sbjct: 180 IPPPPSRPLPADPRVAKGLAPRAEASPSSAAVSSLIEKFEREPVIVASDRPVPGPSPGPP 239
Query: 148 EPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGP 199
EPV++ T + P P++ G+ S LAPGP
Sbjct: 240 EPVMLPQPT------SQPPVPQLPEGE-------------ASRCLFLLAPGP 272
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 32.0 bits (71), Expect = 0.68
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 135 LSSLLRPQPEPQQEPVLITMATVVLTVLTHTP---APRVRLG---QDALLDLSFAYMPPT 188
+SS L+P P QQ AT L + +H P +P V +G Q AL+ + P+
Sbjct: 438 VSSALQPGPNLQQSTANQVQATAQLNLPSHLPLPASPVVHIGPVQQSALVSPGQQIVSPS 497
Query: 189 SEAASSLAPGPPP 201
+ SSL P P
Sbjct: 498 HQQYSSLQSSPIP 510
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 32.0 bits (71), Expect = 0.68
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 11/168 (6%)
Query: 37 GLAKRPGALL-LRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSR 95
GLA P +++ G G PP L P + AG+ ++ P GAP P +
Sbjct: 985 GLAVAPASVVPAPAGSGAPPG--SLGPSEQIG---QAGSTAGPQQQQPAGAPQPGA-VPP 1038
Query: 96 FVPLPAS---AKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEPVLI 152
VP P + + + TP P A+ G+ + L L + P P P P +I
Sbjct: 1039 GVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGM-PPPPPPPAPSII 1097
Query: 153 TMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPP 200
++ ++ + PAP G L + +PP + S P P
Sbjct: 1098 PFGSLADSISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHP 1145
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 31.6 bits (70), Expect = 0.89
Identities = 65/257 (25%), Positives = 94/257 (36%), Gaps = 70/257 (27%)
Query: 37 GLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRF 96
G ++ PG+ QGPG P L+P Q R G PA SR
Sbjct: 682 GSSESPGS----QGPGSPEGSAPLEP-----------PSQQGCRSLAWGEPAG----SRS 722
Query: 97 VPLPA--SAKWASGLTPAQNCPRALDGAWLMVSISSP------------VLSLSSLL-RP 141
PLPA A + G + R A S+SSP SL ++L P
Sbjct: 723 CPLPAPTPAPFKVGALSTEVLGRQHRAALAGRSLSSPPGRANQVPGRPRKPSLGAILDGP 782
Query: 142 QPEPQQE--PVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAY--MPPTSEAASSLAP 197
PEP Q+ L ++ +PAP + D L++ F + +PP+ E A P
Sbjct: 783 SPEPGQQLGQGLDDSGNLL------SPAP---MDWDMLMEPPFLFTAVPPSGELAPPAVP 833
Query: 198 GPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFW 257
P + H+++ GL G+ P E V + WGP G+
Sbjct: 834 PQAP-----------RCHVVIR---GLCGEQPMCWEVGVGL-----ETLWGPGDGS---- 870
Query: 258 LPTVQPFQEGTYLATIH 274
P P +E + +H
Sbjct: 871 QPPSPPVREAAWDQALH 887
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 31.6 bits (70), Expect = 0.89
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMP--PTS-----EAASSLAPGPPPFGLEWRR 208
+ VLT++T TPA R+ GQ + L+ A+ P P S + +LA P P WRR
Sbjct: 611 STVLTLMTLTPAGRIPSGQVSQTQLTAAWAPGCPQSWRRMPSSCPALARHPSPSSQCWRR 670
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 31.2 bits (69), Expect = 1.2
Identities = 62/220 (28%), Positives = 80/220 (36%), Gaps = 40/220 (18%)
Query: 86 APAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEP 145
AP+P SR P+ A +T A + P L P + +S P P P
Sbjct: 20 APSPPPRGSRAGPVVVVAP-GPPVTTATSAPVTLVAPGEARPAWVPGSAETSAPAPAPAP 78
Query: 146 QQEPVLITMATVVLTVLTHTPAPRVRL-------------GQDALLDLSF-AYMPPTSEA 191
P + VVLT+ AP+ +L G + L+ A P T EA
Sbjct: 79 APAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGVETSRALAAGADSPKTEEA 138
Query: 192 ASSLAPGP-PPFGLEWRR-QHLGKGHLL----LAATPG-----------LNGQMPAAQEG 234
S APGP P G R G L LA PG +GQ+
Sbjct: 139 RPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGA 198
Query: 235 AVAFAA---WDDDEPWGPWTG-NGTFWLP----TVQPFQE 266
A A +A ++P GP TG +GT P TV P E
Sbjct: 199 AAATSASAGQAPEDPSGPGTGPSGTCEAPVAVVTVTPAPE 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,963,149
Number of Sequences: 37866
Number of extensions: 914073
Number of successful extensions: 3593
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 3534
Number of HSP's gapped (non-prelim): 160
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.