Guide to the Human Genome
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Name: LOC100287256 Sequence: fasta or formatted (208aa) NCBI GI: 239742343
Description:

PREDICTED: hypothetical protein XP_002342497

Not currently referenced in the text

Other entries for this name:
alt mRNA {208aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         17           1
 C cysteine            1.4          3           1
 D aspartate           3.4          7           1
 E glutamate           5.8         12           1
 F phenylalanine       1.0          2           1
 G glycine            10.1         21           2
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              2.4          5           1
 L leucine            10.6         22           3
 M methionine          0.5          1           1
 N asparagine          1.4          3           1
 P proline            18.3         38           4
 Q glutamine           4.8         10           1
 R arginine           13.5         28           4
 S serine              8.2         17           2
 T threonine           5.8         12           1
 V valine              3.8          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342497 
LOC100287256          1.000   PREDICTED: hypothetical protein 
LOC100293496          0.998   PREDICTED: hypothetical protein 
CASKIN2               0.067   cask-interacting protein 2 isoform b 
CASKIN2               0.067   cask-interacting protein 2 isoform a 
NACA                  0.067   nascent polypeptide-associated complex alpha subuni...
PRB2                  0.065   proline-rich protein BstNI subfamily 2 
SGIP1                 0.060   SH3-domain GRB2-like (endophilin) interacting prote...
SF1                   0.060   splicing factor 1 isoform 2 
PRB1                  0.060   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC390595             0.060   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.060   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.060   PREDICTED: hypothetical protein 
PCLO                  0.057   piccolo isoform 2 
PCLO                  0.057   piccolo isoform 1 
KIAA1522              0.055   hypothetical protein LOC57648 
KDM6B                 0.055   lysine (K)-specific demethylase 6B 
SYNPO                 0.052   synaptopodin isoform A 
PRR18                 0.052   proline rich region 18 
GNAS                  0.050   GNAS complex locus alex 
SRRM1                 0.050   serine/arginine repetitive matrix 1 
SETD1A                0.050   SET domain containing 1A 
WIPF2                 0.050   WIRE protein 
SH3BP1                0.050   SH3-domain binding protein 1 
MDC1                  0.047   mediator of DNA-damage checkpoint 1 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
RBM33                 0.047   RNA binding motif protein 33 
SF1                   0.047   splicing factor 1 isoform 1 
LMTK3                 0.047   lemur tyrosine kinase 3 
MLL4                  0.047   myeloid/lymphoid or mixed-lineage leukemia 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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