Guide to the Human Genome
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Name: SYNJ2 Sequence: fasta or formatted (1496aa) NCBI GI: 26190608
Description:

synaptojanin 2

Referenced in:

Inositol Pathways
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        108           2
 C cysteine            1.3         20           2
 D aspartate           6.1         91           2
 E glutamate           6.2         93           3
 F phenylalanine       4.3         64           2
 G glycine             7.2        107           2
 H histidine           2.4         36           2
 I isoleucine          3.2         48           2
 K lysine              6.4         96           3
 L leucine            10.0        150           3
 M methionine          1.4         21           1
 N asparagine          2.7         41           2
 P proline             7.2        107           4
 Q glutamine           4.6         69           2
 R arginine            5.7         85           2
 S serine              7.9        118           2
 T threonine           5.8         87           2
 V valine              7.0        104           3
 W tryptophan          1.4         21           2
 Y tyrosine            2.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptojanin 2 
SYNJ1                 0.387   synaptojanin 1 isoform d 
SYNJ1                 0.383   synaptojanin 1 isoform b 
SYNJ1                 0.383   synaptojanin 1 isoform a 
SYNJ1                 0.382   synaptojanin 1 isoform c 
OCRL                  0.066   phosphatidylinositol polyphosphate 5-phosphatase iso...
OCRL                  0.066   phosphatidylinositol polyphosphate 5-phosphatase iso...
INPP5B                0.060   inositol polyphosphate-5-phosphatase, 75kDa precurs...
SACM1L                0.055   suppressor of actin 1 
INPP5F                0.051   inositol polyphosphate-5-phosphatase F 
INPP5J                0.051   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
INPP5D                0.043   SH2 containing inositol phosphatase isoform b 
INPP5D                0.043   SH2 containing inositol phosphatase isoform a 
INPPL1                0.043   inositol polyphosphate phosphatase-like 1 
INPP5E                0.038   inositol polyphosphate-5-phosphatase E 
INPP5K                0.035   inositol polyphosphate-5-phosphatase K isoform 1 [Ho...
INPP5K                0.033   inositol polyphosphate-5-phosphatase K isoform 2 [H...
INPP5K                0.033   inositol polyphosphate-5-phosphatase K isoform 2 [Ho...
FIG4                  0.027   Sac domain-containing inositol phosphatase 3 
RAPH1                 0.015   Ras association and pleckstrin homology domains 1 is...
PRR12                 0.014   proline rich 12 
PRG4                  0.014   proteoglycan 4 isoform D 
PRG4                  0.014   proteoglycan 4 isoform C 
PRG4                  0.014   proteoglycan 4 isoform B 
PRG4                  0.014   proteoglycan 4 isoform A 
PRB2                  0.013   proline-rich protein BstNI subfamily 2 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
TTN                   0.012   titin isoform N2-A 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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