Guide to the Human Genome
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Name: OCRL Sequence: fasta or formatted (893aa) NCBI GI: 13325070
Description:

phosphatidylinositol polyphosphate 5-phosphatase isoform b

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [901aa] phosphatidylinositol polyphosphate 5-phosphatase isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         38           2
 C cysteine            2.5         22           1
 D aspartate           5.6         50           1
 E glutamate           7.7         69           2
 F phenylalanine       5.2         46           2
 G glycine             4.4         39           2
 H histidine           2.2         20           1
 I isoleucine          5.8         52           2
 K lysine              6.4         57           2
 L leucine            10.5         94           3
 M methionine          2.6         23           2
 N asparagine          4.9         44           2
 P proline             5.9         53           5
 Q glutamine           5.6         50           2
 R arginine            6.2         55           2
 S serine              6.3         56           3
 T threonine           3.7         33           2
 V valine              6.4         57           2
 W tryptophan          1.2         11           1
 Y tyrosine            2.7         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol polyphosphate 5-phosphatase iso... 
OCRL                  0.996   phosphatidylinositol polyphosphate 5-phosphatase iso...
INPP5B                0.425   inositol polyphosphate-5-phosphatase, 75kDa precurs...
SYNJ2                 0.110   synaptojanin 2 
SYNJ1                 0.101   synaptojanin 1 isoform c 
SYNJ1                 0.101   synaptojanin 1 isoform a 
SYNJ1                 0.101   synaptojanin 1 isoform b 
SYNJ1                 0.101   synaptojanin 1 isoform d 
INPP5J                0.083   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
INPPL1                0.079   inositol polyphosphate phosphatase-like 1 
INPP5D                0.076   SH2 containing inositol phosphatase isoform b 
INPP5D                0.076   SH2 containing inositol phosphatase isoform a 
INPP5K                0.070   inositol polyphosphate-5-phosphatase K isoform 1 [Ho...
INPP5K                0.063   inositol polyphosphate-5-phosphatase K isoform 2 [H...
INPP5K                0.063   inositol polyphosphate-5-phosphatase K isoform 2 [Ho...
INPP5E                0.050   inositol polyphosphate-5-phosphatase E 
FAM13A                0.023   family with sequence similarity 13, member A1 isofor...
ARHGAP22              0.022   Rho GTPase activating protein 2 
ARHGAP24              0.021   Rho GTPase activating protein 24 isoform 3 
ARHGAP24              0.021   Rho GTPase activating protein 24 isoform 2 
ARHGAP24              0.021   Rho GTPase activating protein 24 isoform 1 
LOC553158             0.019   PRR5-ARHGAP8 fusion protein 
ARHGAP8               0.019   Rho GTPase activating protein 8 isoform 2 
ARHGAP8               0.019   Rho GTPase activating protein 8 isoform 1 
CHN2                  0.017   beta chimerin isoform 2 
CHN2                  0.017   beta chimerin isoform 1 
RICH2                 0.017   Rho GTPase-activating protein RICH2 
ARHGAP25              0.016   Rho GTPase activating protein 25 isoform a 
ARHGAP25              0.016   Rho GTPase activating protein 25 isoform b 
ARHGAP29              0.016   PTPL1-associated RhoGAP 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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