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Search of human proteins with 26051237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051237 nucleoporin 54kDa [Homo sapiens]
(507 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051237 nucleoporin 54kDa [Homo sapiens] 1006 0.0
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 59 1e-08
gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens] 59 1e-08
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 59 1e-08
gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens] 59 1e-08
gi|89276766 trophinin isoform 5 [Homo sapiens] 52 1e-06
gi|24497609 nucleoporin 62kDa [Homo sapiens] 51 3e-06
gi|24497607 nucleoporin 62kDa [Homo sapiens] 51 3e-06
gi|24497605 nucleoporin 62kDa [Homo sapiens] 51 3e-06
gi|24497603 nucleoporin 62kDa [Homo sapiens] 51 3e-06
gi|30102928 nucleoporin like 1 isoform a [Homo sapiens] 49 8e-06
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 49 8e-06
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 49 1e-05
gi|109148552 keratin 3 [Homo sapiens] 48 2e-05
gi|55956899 keratin 9 [Homo sapiens] 47 4e-05
gi|192807292 keratin 24 [Homo sapiens] 46 7e-05
gi|119395754 keratin 5 [Homo sapiens] 46 7e-05
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 46 7e-05
gi|153791670 keratin 76 [Homo sapiens] 46 9e-05
gi|131412228 keratin 13 isoform b [Homo sapiens] 46 9e-05
gi|131412225 keratin 13 isoform a [Homo sapiens] 46 9e-05
gi|64085252 hypothetical protein LOC145508 [Homo sapiens] 45 2e-04
gi|33946327 nucleoporin 214kDa [Homo sapiens] 43 6e-04
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 43 8e-04
gi|221219020 NYD-SP11 protein [Homo sapiens] 42 0.001
gi|24430190 keratin 15 [Homo sapiens] 42 0.001
gi|47132620 keratin 2 [Homo sapiens] 42 0.001
gi|239752328 PREDICTED: hypothetical protein XP_002348200 [Homo ... 42 0.001
gi|239746841 PREDICTED: hypothetical protein XP_002344236 [Homo ... 42 0.001
gi|6679074 nucleoporin like 2 [Homo sapiens] 42 0.001
>gi|26051237 nucleoporin 54kDa [Homo sapiens]
Length = 507
Score = 1006 bits (2600), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG 60
MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG
Sbjct: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG 60
Query: 61 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT 120
FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT 120
Query: 121 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC 180
ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC
Sbjct: 121 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC 180
Query: 181 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV 240
MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV
Sbjct: 181 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV 240
Query: 241 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP 300
VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP
Sbjct: 241 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP 300
Query: 301 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE 360
PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE
Sbjct: 301 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE 360
Query: 361 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE 420
LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
Sbjct: 361 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE 420
Query: 421 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI 480
LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI
Sbjct: 421 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI 480
Query: 481 IKDDLEDIKLVEHGLNETIHIRGGVFS 507
IKDDLEDIKLVEHGLNETIHIRGGVFS
Sbjct: 481 IKDDLEDIKLVEHGLNETIHIRGGVFS 507
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 58.5 bits (140), Expect = 1e-08
Identities = 56/156 (35%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG- 62
+FG P G T + G GFGTTS A +F + NTG GLFG +Q K G
Sbjct: 5 SFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTG--GLFGNSQTKPGGL 62
Query: 63 FGT--------------GFGTTTGTSTGL-GTG-LGTGL--------------GFGGFNT 92
FGT GFGT+TGT+ L GT GT L GFG F T
Sbjct: 63 FGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT 122
Query: 93 QQQQQTTLGGLFSQPTQAPTQSNQLINTASALSAPT 128
T+ GGLF T SN +T+ +L P+
Sbjct: 123 ----STSSGGLFGTTN---TTSNPFGSTSGSLFGPS 151
Score = 55.5 bits (132), Expect = 1e-07
Identities = 61/182 (33%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 10 GTSGTAAATAAPAGGFGG------------FGTTSTTAGSAFSFSAPT-----NTGTTGL 52
GTS T T P G FG FG +TT + FSF + +T T GL
Sbjct: 260 GTSTTGFGTN-PGGLFGQQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGL 318
Query: 53 FGGTQ--NKGFGFGTGFGTTTGTSTGLGTGL--GTGLGFGGFNTQQQQQTTLGGLFSQPT 108
FG TQ G FGT T+TGT+ G GTGL T GFG + L S T
Sbjct: 319 FGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTT 378
Query: 109 QAP---TQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKG-----YFNNNIP 160
AP T S L + S ++ G + A L A +GT G F NN P
Sbjct: 379 SAPSFGTTSGGLFGFGTNTSGNSIFG-SKPAPGTLGTGLGAGFGTALGAGQASLFGNNQP 437
Query: 161 PV 162
+
Sbjct: 438 KI 439
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/94 (43%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGG-TQNKGFGFG---TGFGTTTGTSTGLGTGLG 82
G GTT+ GS+ P + TGLF T N GF +G T FGT+T TG GT
Sbjct: 220 GAGTTTGLFGSS-----PATSSATGLFSSSTTNSGFAYGQNKTAFGTST---TGFGTNP- 270
Query: 83 TGLGFGGFNTQQQQQTTLGGLFSQP-TQAPTQSN 115
GG QQ QQTT LFS+P QA T N
Sbjct: 271 -----GGLFGQQNQQTT--SLFSKPFGQATTTQN 297
Score = 45.8 bits (107), Expect = 9e-05
Identities = 42/117 (35%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 8 PSGTSGTAAATAAPAG---GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
P G GTA T+ G G FG T+T G+ S N TT FG + FG
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTT--FGSSTTSAPSFG 384
Query: 65 T------GFGTTT------------GT-STGLGTGLGTGLGFGGFNTQQQQQTTLGG 102
T GFGT T GT TGLG G GT LG G + Q +GG
Sbjct: 385 TTSGGLFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGG 441
Score = 40.4 bits (93), Expect = 0.004
Identities = 47/149 (31%), Positives = 60/149 (40%), Gaps = 31/149 (20%)
Query: 40 SFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTG---LGTGLGTGLGFGGFNTQQQQ 96
SF P GT G FG T FG TGFGTT+G + G G+ TG FG
Sbjct: 5 SFGTPFGGGTGG-FGTTST--FGQNTGFGTTSGGAFGTSAFGSSNNTGGLFG------NS 55
Query: 97 QTTLGGL-----FSQPTQAPT----------QSNQLINTASALSAPTLLGDERDAILAKW 141
QT GGL FSQP + + +N L TAS + +L + +A
Sbjct: 56 QTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTAS--TGTSLFSSQNNAFAQ-- 111
Query: 142 NQLQAFWGTGKGYFNNNIPPVEFTQENPF 170
N+ F G + + T NPF
Sbjct: 112 NKPTGFGNFGTSTSSGGLFGTTNTTSNPF 140
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 3 FNFGAPSGTSGTAAATAAPAG----------------GFGGFGTTSTTAGSAFSFSAPTN 46
F FG +GT+ T TA+ GFG FGT ST++G F TN
Sbjct: 79 FGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT-STSSGGLFG---TTN 134
Query: 47 TGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGT 83
T T+ FG T FG + TGT+ GT
Sbjct: 135 T-TSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGT 170
>gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]
Length = 937
Score = 58.5 bits (140), Expect = 1e-08
Identities = 56/156 (35%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG- 62
+FG P G T + G GFGTTS A +F + NTG GLFG +Q K G
Sbjct: 5 SFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTG--GLFGNSQTKPGGL 62
Query: 63 FGT--------------GFGTTTGTSTGL-GTG-LGTGL--------------GFGGFNT 92
FGT GFGT+TGT+ L GT GT L GFG F T
Sbjct: 63 FGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT 122
Query: 93 QQQQQTTLGGLFSQPTQAPTQSNQLINTASALSAPT 128
T+ GGLF T SN +T+ +L P+
Sbjct: 123 ----STSSGGLFGTTN---TTSNPFGSTSGSLFGPS 151
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/124 (37%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 10 GTSGTAAATAAPAGGFGG------------FGTTSTTAGSAFSFSAPT-----NTGTTGL 52
GTS T T P G FG FG +TT + FSF + +T T GL
Sbjct: 260 GTSTTGFGTN-PGGLFGQQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGL 318
Query: 53 FGGTQ--NKGFGFGTGFGTTTGTSTGLGTGL--GTGLGFGGFNTQQQQQTTLGGLFSQPT 108
FG TQ G FGT T+TGT+ G GTGL T GFG + L S T
Sbjct: 319 FGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTT 378
Query: 109 QAPT 112
AP+
Sbjct: 379 SAPS 382
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/94 (43%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGG-TQNKGFGFG---TGFGTTTGTSTGLGTGLG 82
G GTT+ GS+ P + TGLF T N GF +G T FGT+T TG GT
Sbjct: 220 GAGTTTGLFGSS-----PATSSATGLFSSSTTNSGFAYGQNKTAFGTST---TGFGTNP- 270
Query: 83 TGLGFGGFNTQQQQQTTLGGLFSQP-TQAPTQSN 115
GG QQ QQTT LFS+P QA T N
Sbjct: 271 -----GGLFGQQNQQTT--SLFSKPFGQATTTQN 297
Score = 46.2 bits (108), Expect = 7e-05
Identities = 45/128 (35%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 5 FGAPSGTS-GTAAATAAPA-----GGFGGFGTTS------TTAGSAFSFSAPTNTGTTGL 52
FG + TS GTA T GFG G+T TT GS+ + + T + GL
Sbjct: 331 FGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGL 390
Query: 53 FGG---------TQNKGFGFGTG------FGT--TTGT-STGLGTGLGTGLGFGGFNTQQ 94
FG T FGFGT FG+ GT TGLG G GT LG G +
Sbjct: 391 FGNKPTLTLGTNTNTSNFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFG 450
Query: 95 QQQTTLGG 102
Q +GG
Sbjct: 451 NNQPKIGG 458
Score = 40.4 bits (93), Expect = 0.004
Identities = 47/149 (31%), Positives = 60/149 (40%), Gaps = 31/149 (20%)
Query: 40 SFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTG---LGTGLGTGLGFGGFNTQQQQ 96
SF P GT G FG T FG TGFGTT+G + G G+ TG FG
Sbjct: 5 SFGTPFGGGTGG-FGTTST--FGQNTGFGTTSGGAFGTSAFGSSNNTGGLFG------NS 55
Query: 97 QTTLGGL-----FSQPTQAPT----------QSNQLINTASALSAPTLLGDERDAILAKW 141
QT GGL FSQP + + +N L TAS + +L + +A
Sbjct: 56 QTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTAS--TGTSLFSSQNNAFAQ-- 111
Query: 142 NQLQAFWGTGKGYFNNNIPPVEFTQENPF 170
N+ F G + + T NPF
Sbjct: 112 NKPTGFGNFGTSTSSGGLFGTTNTTSNPF 140
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 3 FNFGAPSGTSGTAAATAAPAG----------------GFGGFGTTSTTAGSAFSFSAPTN 46
F FG +GT+ T TA+ GFG FGT ST++G F TN
Sbjct: 79 FGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT-STSSGGLFG---TTN 134
Query: 47 TGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGT 83
T T+ FG T FG + TGT+ GT
Sbjct: 135 T-TSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGT 170
Score = 33.1 bits (74), Expect = 0.61
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNK-GFG 62
NFG + TSG + + PA G G G F G LFG Q K G
Sbjct: 407 NFGFGTNTSGNSIFGSKPAPGTLG-------TGLGAGFGTALGAGQASLFGNNQPKIGGP 459
Query: 63 FGTGFGTTTGTSTGLGTGLGTGLGFG 88
GTG G +T T LGFG
Sbjct: 460 LGTGAFGAPGFNTTTAT-----LGFG 480
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 58.5 bits (140), Expect = 1e-08
Identities = 56/156 (35%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG- 62
+FG P G T + G GFGTTS A +F + NTG GLFG +Q K G
Sbjct: 5 SFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTG--GLFGNSQTKPGGL 62
Query: 63 FGT--------------GFGTTTGTSTGL-GTG-LGTGL--------------GFGGFNT 92
FGT GFGT+TGT+ L GT GT L GFG F T
Sbjct: 63 FGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT 122
Query: 93 QQQQQTTLGGLFSQPTQAPTQSNQLINTASALSAPT 128
T+ GGLF T SN +T+ +L P+
Sbjct: 123 ----STSSGGLFGTTN---TTSNPFGSTSGSLFGPS 151
Score = 55.5 bits (132), Expect = 1e-07
Identities = 61/182 (33%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 10 GTSGTAAATAAPAGGFGG------------FGTTSTTAGSAFSFSAPT-----NTGTTGL 52
GTS T T P G FG FG +TT + FSF + +T T GL
Sbjct: 260 GTSTTGFGTN-PGGLFGQQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGL 318
Query: 53 FGGTQ--NKGFGFGTGFGTTTGTSTGLGTGL--GTGLGFGGFNTQQQQQTTLGGLFSQPT 108
FG TQ G FGT T+TGT+ G GTGL T GFG + L S T
Sbjct: 319 FGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTT 378
Query: 109 QAP---TQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKG-----YFNNNIP 160
AP T S L + S ++ G + A L A +GT G F NN P
Sbjct: 379 SAPSFGTTSGGLFGFGTNTSGNSIFG-SKPAPGTLGTGLGAGFGTALGAGQASLFGNNQP 437
Query: 161 PV 162
+
Sbjct: 438 KI 439
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/94 (43%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGG-TQNKGFGFG---TGFGTTTGTSTGLGTGLG 82
G GTT+ GS+ P + TGLF T N GF +G T FGT+T TG GT
Sbjct: 220 GAGTTTGLFGSS-----PATSSATGLFSSSTTNSGFAYGQNKTAFGTST---TGFGTNP- 270
Query: 83 TGLGFGGFNTQQQQQTTLGGLFSQP-TQAPTQSN 115
GG QQ QQTT LFS+P QA T N
Sbjct: 271 -----GGLFGQQNQQTT--SLFSKPFGQATTTQN 297
Score = 45.8 bits (107), Expect = 9e-05
Identities = 42/117 (35%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 8 PSGTSGTAAATAAPAG---GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
P G GTA T+ G G FG T+T G+ S N TT FG + FG
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTT--FGSSTTSAPSFG 384
Query: 65 T------GFGTTT------------GT-STGLGTGLGTGLGFGGFNTQQQQQTTLGG 102
T GFGT T GT TGLG G GT LG G + Q +GG
Sbjct: 385 TTSGGLFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGG 441
Score = 40.4 bits (93), Expect = 0.004
Identities = 47/149 (31%), Positives = 60/149 (40%), Gaps = 31/149 (20%)
Query: 40 SFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTG---LGTGLGTGLGFGGFNTQQQQ 96
SF P GT G FG T FG TGFGTT+G + G G+ TG FG
Sbjct: 5 SFGTPFGGGTGG-FGTTST--FGQNTGFGTTSGGAFGTSAFGSSNNTGGLFG------NS 55
Query: 97 QTTLGGL-----FSQPTQAPT----------QSNQLINTASALSAPTLLGDERDAILAKW 141
QT GGL FSQP + + +N L TAS + +L + +A
Sbjct: 56 QTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTAS--TGTSLFSSQNNAFAQ-- 111
Query: 142 NQLQAFWGTGKGYFNNNIPPVEFTQENPF 170
N+ F G + + T NPF
Sbjct: 112 NKPTGFGNFGTSTSSGGLFGTTNTTSNPF 140
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 3 FNFGAPSGTSGTAAATAAPAG----------------GFGGFGTTSTTAGSAFSFSAPTN 46
F FG +GT+ T TA+ GFG FGT ST++G F TN
Sbjct: 79 FGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT-STSSGGLFG---TTN 134
Query: 47 TGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGT 83
T T+ FG T FG + TGT+ GT
Sbjct: 135 T-TSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGT 170
>gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]
Length = 920
Score = 58.5 bits (140), Expect = 1e-08
Identities = 56/156 (35%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG- 62
+FG P G T + G GFGTTS A +F + NTG GLFG +Q K G
Sbjct: 5 SFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTG--GLFGNSQTKPGGL 62
Query: 63 FGT--------------GFGTTTGTSTGL-GTG-LGTGL--------------GFGGFNT 92
FGT GFGT+TGT+ L GT GT L GFG F T
Sbjct: 63 FGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT 122
Query: 93 QQQQQTTLGGLFSQPTQAPTQSNQLINTASALSAPT 128
T+ GGLF T SN +T+ +L P+
Sbjct: 123 ----STSSGGLFGTTN---TTSNPFGSTSGSLFGPS 151
Score = 55.5 bits (132), Expect = 1e-07
Identities = 61/182 (33%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 10 GTSGTAAATAAPAGGFGG------------FGTTSTTAGSAFSFSAPT-----NTGTTGL 52
GTS T T P G FG FG +TT + FSF + +T T GL
Sbjct: 260 GTSTTGFGTN-PGGLFGQQNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGL 318
Query: 53 FGGTQ--NKGFGFGTGFGTTTGTSTGLGTGL--GTGLGFGGFNTQQQQQTTLGGLFSQPT 108
FG TQ G FGT T+TGT+ G GTGL T GFG + L S T
Sbjct: 319 FGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTT 378
Query: 109 QAP---TQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKG-----YFNNNIP 160
AP T S L + S ++ G + A L A +GT G F NN P
Sbjct: 379 SAPSFGTTSGGLFGFGTNTSGNSIFG-SKPAPGTLGTGLGAGFGTALGAGQASLFGNNQP 437
Query: 161 PV 162
+
Sbjct: 438 KI 439
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/94 (43%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGG-TQNKGFGFG---TGFGTTTGTSTGLGTGLG 82
G GTT+ GS+ P + TGLF T N GF +G T FGT+T TG GT
Sbjct: 220 GAGTTTGLFGSS-----PATSSATGLFSSSTTNSGFAYGQNKTAFGTST---TGFGTNP- 270
Query: 83 TGLGFGGFNTQQQQQTTLGGLFSQP-TQAPTQSN 115
GG QQ QQTT LFS+P QA T N
Sbjct: 271 -----GGLFGQQNQQTT--SLFSKPFGQATTTQN 297
Score = 45.8 bits (107), Expect = 9e-05
Identities = 42/117 (35%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 8 PSGTSGTAAATAAPAG---GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
P G GTA T+ G G FG T+T G+ S N TT FG + FG
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTT--FGSSTTSAPSFG 384
Query: 65 T------GFGTTT------------GT-STGLGTGLGTGLGFGGFNTQQQQQTTLGG 102
T GFGT T GT TGLG G GT LG G + Q +GG
Sbjct: 385 TTSGGLFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGG 441
Score = 40.4 bits (93), Expect = 0.004
Identities = 47/149 (31%), Positives = 60/149 (40%), Gaps = 31/149 (20%)
Query: 40 SFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTG---LGTGLGTGLGFGGFNTQQQQ 96
SF P GT G FG T FG TGFGTT+G + G G+ TG FG
Sbjct: 5 SFGTPFGGGTGG-FGTTST--FGQNTGFGTTSGGAFGTSAFGSSNNTGGLFG------NS 55
Query: 97 QTTLGGL-----FSQPTQAPT----------QSNQLINTASALSAPTLLGDERDAILAKW 141
QT GGL FSQP + + +N L TAS + +L + +A
Sbjct: 56 QTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTAS--TGTSLFSSQNNAFAQ-- 111
Query: 142 NQLQAFWGTGKGYFNNNIPPVEFTQENPF 170
N+ F G + + T NPF
Sbjct: 112 NKPTGFGNFGTSTSSGGLFGTTNTTSNPF 140
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 3 FNFGAPSGTSGTAAATAAPAG----------------GFGGFGTTSTTAGSAFSFSAPTN 46
F FG +GT+ T TA+ GFG FGT ST++G F TN
Sbjct: 79 FGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGT-STSSGGLFG---TTN 134
Query: 47 TGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGT 83
T T+ FG T FG + TGT+ GT
Sbjct: 135 T-TSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGT 170
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 52.4 bits (124), Expect = 1e-06
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 3 FNFGAPSGTS-GTAAATAAPAGGFGGFGTTSTTAGSAFSFSA-PTNTGTTGLFGGTQNKG 60
F+FG T+ G AG GG GT++ +G + S GT+ FGG
Sbjct: 1197 FSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTS 1256
Query: 61 FGFGTGFGTTTGTSTGLGTGLGTGLGF-------GGFNTQQQQQTTLG 101
GFG G GT+ G S GLGT G G G GG T +TLG
Sbjct: 1257 TGFGGGLGTSAGFSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLG 1304
Score = 48.9 bits (115), Expect = 1e-05
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPT--NTGTTGLFGGTQNKGFG 62
FG +SG+ T + + FGG TST G S S ++ T+ FGGT +
Sbjct: 899 FGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSIC 958
Query: 63 F------GTGFGTTTGTSTGLGTGLGTGLGFGG 89
F G GFG TS G+ L T GFGG
Sbjct: 959 FDGSPSTGAGFGGALNTSASFGSVLNTSTGFGG 991
Score = 48.5 bits (114), Expect = 1e-05
Identities = 40/102 (39%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 5 FGAPSGTSGTAAATAAPAGGF-GGFGT---------TSTTAGSAFSFSAPTN--TGTTGL 52
FG GTS + + + GF GG GT TST G SA + GT+
Sbjct: 1219 FGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAG 1278
Query: 53 FGG--TQNKGFGFGTG----FGTTTGTSTGLGTGLGTGLGFG 88
FGG + GFG G G FG+T GTS G GL T GFG
Sbjct: 1279 FGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFG 1320
Score = 47.8 bits (112), Expect = 2e-05
Identities = 45/124 (36%), Positives = 54/124 (43%), Gaps = 28/124 (22%)
Query: 6 GAPSGTSGTAAA--TAAPAGG-------FGGFGTTSTTAGSAFS----FSAPTNTG---- 48
G PS + G AA T+ GG FGG +TS GSA + F P +T
Sbjct: 1121 GTPSNSIGFGAAPSTSVSFGGAHGTSLCFGGAPSTSLCFGSASNTNLCFGGPPSTSACFS 1180
Query: 49 --TTGLF--GGTQNKGFGFGTGFGTTTG------TSTGLGTGLGTGLGF-GGFNTQQQQQ 97
T+ F G + + GF FG G T G TS G G GLGT GF GG +T
Sbjct: 1181 GATSPSFCDGPSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSSGFD 1240
Query: 98 TTLG 101
LG
Sbjct: 1241 GGLG 1244
Score = 47.8 bits (112), Expect = 2e-05
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
FG P TS + +P+ G ST+ G +F TN G G + G G G
Sbjct: 1169 FGGPPSTSACFSGATSPSFCDG----PSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLG 1224
Query: 65 TGFGTTTG--TSTGLGTGLGTGLGFGG 89
T G + G TS+G GLGT GFGG
Sbjct: 1225 TSAGFSGGLSTSSGFDGGLGTSAGFGG 1251
Score = 47.0 bits (110), Expect = 4e-05
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSA--PTNTGTTGLFGGTQNKGF 61
+FG TS + + GFGG +TS + G + S SA T+ F G+ + G
Sbjct: 908 SFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSICFDGSPSTGA 967
Query: 62 GFG------TGFGTTTGTSTGLGTGLGTGLGFGG 89
GFG FG+ TSTG G + T FGG
Sbjct: 968 GFGGALNTSASFGSVLNTSTGFGGAMSTSADFGG 1001
Score = 46.2 bits (108), Expect = 7e-05
Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGF 63
NFG TS + + GFGG TS + GS + T+TG FGG + F
Sbjct: 948 NFGGTLSTSICFDGSPSTGAGFGGALNTSASFGSVLN----TSTG----FGGAMSTSADF 999
Query: 64 G------TGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFS 105
G FG + GTS G+ L T G+GG T GG S
Sbjct: 1000 GGTLSTSVCFGGSPGTSVSFGSALNTNAGYGG---AVSTNTDFGGTLS 1044
Score = 43.9 bits (102), Expect = 3e-04
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 32/120 (26%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGGFG-GFG-TTSTTAG------------------SAFSF 41
+F+ G S SG + +A +GG GFG T STTAG + FS
Sbjct: 822 SFSGGVSSSFSGPLSTSATFSGGASSGFGGTLSTTAGFSGVLSTSTSFGSAPTTSTVFSS 881
Query: 42 SAPTNTGTTGL------FGGTQNKGFGFG------TGFGTTTGTSTGLGTGLGTGLGFGG 89
+ T+TG G+ FGG+ + FG FG + TSTG G L T + FGG
Sbjct: 882 ALSTSTGFGGILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGG 941
Score = 42.7 bits (99), Expect = 8e-04
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTN--TGTTGLFGGTQNKGF 61
+FG TS + + + GFGG T+ + G A S SA + T+ F G
Sbjct: 1038 DFGGTLSTSVCFGGSPSTSAGFGGALNTNASFGCAVSTSASFSGAVSTSACFSGAPITNP 1097
Query: 62 GFGTGFGTTTGTSTGLGTGLGTGLGFGG 89
GFG F TS G G L T FGG
Sbjct: 1098 GFGGAF----STSAGFGGALSTAADFGG 1121
Score = 42.7 bits (99), Expect = 8e-04
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTN--TGTTGLFGGTQNKGF 61
+FG TS + + + + F G T+ G AFS SA T FGGT +
Sbjct: 1068 SFGCAVSTSASFSGAVSTSACFSGAPITNPGFGGAFSTSAGFGGALSTAADFGGTPSNSI 1127
Query: 62 GFGTGFGTTTGTSTGLGTGLGTGLGFGG 89
GFG TS G GT L FGG
Sbjct: 1128 ----GFGAAPSTSVSFGGAHGTSLCFGG 1151
Score = 42.7 bits (99), Expect = 8e-04
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTG--TTGLFGGTQNKGF- 61
F GTS + GFGG T+ + GS SA + G T+ FG N F
Sbjct: 1269 FSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRPNASFD 1328
Query: 62 -------GFGTGFGTTTG------TSTGLGTGLGTGLGFGG 89
GFG+G T+TG TSTG +G + +GF G
Sbjct: 1329 RGLSTIIGFGSGSNTSTGFTGEPSTSTGFSSGPSSIVGFSG 1369
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 27/112 (24%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFG---------------GFGTTSTTAGSAFSFSAPTNTG 48
+FG+ GTS + + + GFG GFG+ S T+ + F+ T+TG
Sbjct: 1298 SFGSTLGTSAGFSGGLSTSDGFGSRPNASFDRGLSTIIGFGSGSNTS-TGFTGEPSTSTG 1356
Query: 49 TTGL------FGGTQNKGFGFGTG---FGTTTGTSTGLGTGLG--TGLGFGG 89
+ F G + G GF +G G + G STG G G G TG GFGG
Sbjct: 1357 FSSGPSSIVGFSGGPSTGVGFCSGPSTSGFSGGPSTGAGFGGGPNTGAGFGG 1408
Score = 40.0 bits (92), Expect = 0.005
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGF- 63
FG GT+ + +T + GF G +TS GS + S T FG N GF
Sbjct: 1289 FGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRPNASFDRGLSTIIGFGSGSNTSTGFT 1348
Query: 64 -----GTGFGTTTGTSTGLGTGLGTGLGF 87
TGF + + G G TG+GF
Sbjct: 1349 GEPSTSTGFSSGPSSIVGFSGGPSTGVGF 1377
Score = 39.3 bits (90), Expect = 0.009
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 6 GAPSGTSGTAAATAAPAGGFGG----FGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGF 61
G PS ++G ++ ++ G GG G S + S FS T G FGG N G
Sbjct: 1349 GEPSTSTGFSSGPSSIVGFSGGPSTGVGFCSGPSTSGFSGGPSTGAG----FGGGPNTGA 1404
Query: 62 GFGTGFGTTTGTSTGLGTGLGTGLGFG 88
GFG G T+ G +G + G +G
Sbjct: 1405 GFGGGPSTSAGFGSGAASLGACGFSYG 1431
Score = 38.9 bits (89), Expect = 0.011
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSA--PTNTGTTGLFGGTQNKGFG 62
FG GTS + + G+GG +T+T G S S + T+ FGG N
Sbjct: 1009 FGGSPGTSVSFGSALNTNAGYGGAVSTNTDFGGTLSTSVCFGGSPSTSAGFGGALNTNAS 1068
Query: 63 FGTGFGTTTG----------------TSTGLGTGLGTGLGFGG 89
FG T+ T+ G G T GFGG
Sbjct: 1069 FGCAVSTSASFSGAVSTSACFSGAPITNPGFGGAFSTSAGFGG 1111
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGF 61
+ +FG TS + ++ A+ + FG +TST+ S S S T+ F G + F
Sbjct: 774 SISFGGTLSTSSSFSSAASIS--FGCAHSTSTSFSSEASISFGGMPCTSASFSGGVSSSF 831
Query: 62 G--FGTGFGTTTGTSTGLGTGLGTGLGFGGF---NTQQQQQTTLGGLFSQPTQAPTQSNQ 116
T + G S+G G L T GF G +T T +FS T
Sbjct: 832 SGPLSTSATFSGGASSGFGGTLSTTAGFSGVLSTSTSFGSAPTTSTVFSSALSTSTGFGG 891
Query: 117 LINTA 121
+++T+
Sbjct: 892 ILSTS 896
Score = 33.5 bits (75), Expect = 0.47
Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 55/139 (39%)
Query: 6 GAPSGTSGTAAATAAPAGG-----FGGFGTTSTTAGSA---------------------- 38
G P T G A +T+A FGG +TS++ SA
Sbjct: 753 GGPGITFGVAPSTSASFSNTASISFGGTLSTSSSFSSAASISFGCAHSTSTSFSSEASIS 812
Query: 39 ----------------FSFSAPTNT------GTTGLFGGTQNKGFGF------GTGFGTT 70
SFS P +T G + FGGT + GF T FG+
Sbjct: 813 FGGMPCTSASFSGGVSSSFSGPLSTSATFSGGASSGFGGTLSTTAGFSGVLSTSTSFGSA 872
Query: 71 TGTSTGLGTGLGTGLGFGG 89
TST + L T GFGG
Sbjct: 873 PTTSTVFSSALSTSTGFGG 891
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 50.8 bits (120), Expect = 3e-06
Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 3 FNFG---APSG--TSGTA-AATAAPAGGFGGFGTTSTTAGSAFSFSAP----TNTGTTGL 52
FNFG AP+G T GTA AT PA GF + ST+ F+F AP T+T +TGL
Sbjct: 4 FNFGGTGAPTGGFTFGTAKTATTTPATGF----SFSTSGTGGFNFGAPFQPATSTPSTGL 59
Query: 53 FG------GTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQ 106
F TQ GF FG T T GTG G+G N T +
Sbjct: 60 FSLATQTPATQTTGFTFG------TATLASGGTGFSLGIGASKLNLSNTAATP---AMAN 110
Query: 107 PTQAPTQSNQLIN------TASALSAPT 128
P+ S+ L N T+S +APT
Sbjct: 111 PSGFGLGSSNLTNAISSTVTSSQGTAPT 138
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 35/144 (24%)
Query: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSF--SAPTNTGTTGLF----- 53
+ F P+ T+ A AAP T ++T S F+ +APT++ TTGL
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPT----ATITSTGPSLFASIATAPTSSATTGLSLCTPV 243
Query: 54 -------GGTQN---KGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGL 103
GTQ K G +G TTT T+ T +T G
Sbjct: 244 TTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATA------------TTTSSSSTTGFA 291
Query: 104 FSQPTQAPTQSNQLINTASALSAP 127
+ AP NTA+A++AP
Sbjct: 292 LNLKPLAPAGIPS--NTAAAVTAP 313
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 50.8 bits (120), Expect = 3e-06
Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 3 FNFG---APSG--TSGTA-AATAAPAGGFGGFGTTSTTAGSAFSFSAP----TNTGTTGL 52
FNFG AP+G T GTA AT PA GF + ST+ F+F AP T+T +TGL
Sbjct: 4 FNFGGTGAPTGGFTFGTAKTATTTPATGF----SFSTSGTGGFNFGAPFQPATSTPSTGL 59
Query: 53 FG------GTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQ 106
F TQ GF FG T T GTG G+G N T +
Sbjct: 60 FSLATQTPATQTTGFTFG------TATLASGGTGFSLGIGASKLNLSNTAATP---AMAN 110
Query: 107 PTQAPTQSNQLIN------TASALSAPT 128
P+ S+ L N T+S +APT
Sbjct: 111 PSGFGLGSSNLTNAISSTVTSSQGTAPT 138
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 35/144 (24%)
Query: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSF--SAPTNTGTTGLF----- 53
+ F P+ T+ A AAP T ++T S F+ +APT++ TTGL
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPT----ATITSTGPSLFASIATAPTSSATTGLSLCTPV 243
Query: 54 -------GGTQN---KGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGL 103
GTQ K G +G TTT T+ T +T G
Sbjct: 244 TTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATA------------TTTSSSSTTGFA 291
Query: 104 FSQPTQAPTQSNQLINTASALSAP 127
+ AP NTA+A++AP
Sbjct: 292 LNLKPLAPAGIPS--NTAAAVTAP 313
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 50.8 bits (120), Expect = 3e-06
Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 3 FNFG---APSG--TSGTA-AATAAPAGGFGGFGTTSTTAGSAFSFSAP----TNTGTTGL 52
FNFG AP+G T GTA AT PA GF + ST+ F+F AP T+T +TGL
Sbjct: 4 FNFGGTGAPTGGFTFGTAKTATTTPATGF----SFSTSGTGGFNFGAPFQPATSTPSTGL 59
Query: 53 FG------GTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQ 106
F TQ GF FG T T GTG G+G N T +
Sbjct: 60 FSLATQTPATQTTGFTFG------TATLASGGTGFSLGIGASKLNLSNTAATP---AMAN 110
Query: 107 PTQAPTQSNQLIN------TASALSAPT 128
P+ S+ L N T+S +APT
Sbjct: 111 PSGFGLGSSNLTNAISSTVTSSQGTAPT 138
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 35/144 (24%)
Query: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSF--SAPTNTGTTGLF----- 53
+ F P+ T+ A AAP T ++T S F+ +APT++ TTGL
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPT----ATITSTGPSLFASIATAPTSSATTGLSLCTPV 243
Query: 54 -------GGTQN---KGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGL 103
GTQ K G +G TTT T+ T +T G
Sbjct: 244 TTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATA------------TTTSSSSTTGFA 291
Query: 104 FSQPTQAPTQSNQLINTASALSAP 127
+ AP NTA+A++AP
Sbjct: 292 LNLKPLAPAGIPS--NTAAAVTAP 313
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 50.8 bits (120), Expect = 3e-06
Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 3 FNFG---APSG--TSGTA-AATAAPAGGFGGFGTTSTTAGSAFSFSAP----TNTGTTGL 52
FNFG AP+G T GTA AT PA GF + ST+ F+F AP T+T +TGL
Sbjct: 4 FNFGGTGAPTGGFTFGTAKTATTTPATGF----SFSTSGTGGFNFGAPFQPATSTPSTGL 59
Query: 53 FG------GTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQ 106
F TQ GF FG T T GTG G+G N T +
Sbjct: 60 FSLATQTPATQTTGFTFG------TATLASGGTGFSLGIGASKLNLSNTAATP---AMAN 110
Query: 107 PTQAPTQSNQLIN------TASALSAPT 128
P+ S+ L N T+S +APT
Sbjct: 111 PSGFGLGSSNLTNAISSTVTSSQGTAPT 138
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 35/144 (24%)
Query: 1 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSF--SAPTNTGTTGLF----- 53
+ F P+ T+ A AAP T ++T S F+ +APT++ TTGL
Sbjct: 188 LPFTPATPAATTAGATQPAAPTPT----ATITSTGPSLFASIATAPTSSATTGLSLCTPV 243
Query: 54 -------GGTQN---KGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGL 103
GTQ K G +G TTT T+ T +T G
Sbjct: 244 TTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATA------------TTTSSSSTTGFA 291
Query: 104 FSQPTQAPTQSNQLINTASALSAP 127
+ AP NTA+A++AP
Sbjct: 292 LNLKPLAPAGIPS--NTAAAVTAP 313
>gi|30102928 nucleoporin like 1 isoform a [Homo sapiens]
Length = 599
Score = 49.3 bits (116), Expect = 8e-06
Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 28/138 (20%)
Query: 3 FNFGAPSGTSGTAAATAAPAGG-----------------FGGFGTTSTTAGSAFSFSAPT 45
F+FG+ + S T AA GG FG G+TST A + SAP+
Sbjct: 5 FSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATT----SAPS 60
Query: 46 NTGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFS 105
+ TGLFG GF G GT+TG+ T + TGL G T T F+
Sbjct: 61 SGFGTGLFGSKPATGFTLG-------GTNTGIATTITTGLTLGTPATTSAATTGFSLGFN 113
Query: 106 QPTQAPTQSNQLINTASA 123
+P + T I + SA
Sbjct: 114 KPAASATPFALPITSTSA 131
Score = 38.9 bits (89), Expect = 0.011
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG---------TTTGTSTGL 77
GF S T GS + T+TG FG + G FG TT+ S+G
Sbjct: 4 GFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPSSGF 63
Query: 78 GTGL-----GTGLGFGGFNTQQQQQTTLGGLFSQP--TQAPTQSNQL-INTASALSAPTL 129
GTGL TG GG NT T G P T A T L N +A + P
Sbjct: 64 GTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASATPFA 123
Query: 130 L 130
L
Sbjct: 124 L 124
Score = 37.0 bits (84), Expect = 0.042
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 3 FNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGL-FGGTQNKGF 61
F FG + SG+ +A GFG++ST S F+FS P T + GL FG +
Sbjct: 529 FGFGTTNKPSGSLSA---------GFGSSST---SGFNFSNPGITASAGLTFGVSNPASA 576
Query: 62 GFGTG 66
GFGTG
Sbjct: 577 GFGTG 581
Score = 33.1 bits (74), Expect = 0.61
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
SG + ++A T+ PA +T T + +A T T +TGL G G G
Sbjct: 132 SGLTLSSALTSTPAA------STGFTLNNLGGTTATTTTASTGLSLGGALAGLGGSLFQS 185
Query: 69 TTTGTS----TGLGTGLGT----------GLGFGGFNTQQQQQTTLGGLFSQPTQAPTQS 114
T TGTS LG LGT GLG F++ +++ G + ++A
Sbjct: 186 TNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDE 245
Query: 115 N 115
N
Sbjct: 246 N 246
Score = 32.3 bits (72), Expect = 1.0
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 8 PSGTSGTAAATAAPAG-------GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG 60
P T AAA A A G + + G+ F T ++GL G + G
Sbjct: 454 PFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGLQSSGL-GSSNLGG 512
Query: 61 FGFGTGFG-TTTGTST-GLGT------GLGTGLG---FGGFNTQQQQQTTLGGL 103
FG +GFG +TTG ST G GT L G G GFN T GL
Sbjct: 513 FGTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNPGITASAGL 566
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGF 61
AF+FGA G SG+ A + AGG G +T + F+F+ + T + +FGGT F
Sbjct: 861 AFSFGA--GQSGSTATSTPFAGGLGQNALGTTGQSTPFAFNVSSTTESKPVFGGTATPTF 918
Query: 62 GFGT---GFGTTTGTSTGLGTGLGTGLGFGG 89
G T G G T+G+S G GF G
Sbjct: 919 GLNTPAPGVG-TSGSSLSFGASSAPAQGFVG 948
Score = 38.9 bits (89), Expect = 0.011
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 25/113 (22%)
Query: 5 FGAPSGTS---GTAAATAAPAGGFGGFGTTSTTAGSAFSFS----------------APT 45
FGAP+ + G + A A GFG T+ TA S S S AP
Sbjct: 782 FGAPASSQPAFGGSTAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGSAAPA 841
Query: 46 NTGTTGLF-----GGTQNKGFGFGTGFGTTTGTSTGLGTGLG-TGLGFGGFNT 92
+G+ G+ T F FG G +T TST GLG LG G +T
Sbjct: 842 GSGSFGINVATPGSSTTTGAFSFGAGQSGSTATSTPFAGGLGQNALGTTGQST 894
Score = 35.8 bits (81), Expect = 0.094
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 10 GTSGTAAATAAPAGGFGGFG-TTSTTAGSAFS--FSAPTNTGTTG----LFGGTQNKGFG 62
G TA+A APA FG +T+ G+A S F A T T ++G +FG T F
Sbjct: 774 GLKATASAFGAPASSQPAFGGSTAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFT 833
Query: 63 FGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFS 105
FG G+ G G G N +T G FS
Sbjct: 834 FG-------------GSAAPAGSGSFGINVATPGSSTTTGAFS 863
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 48.9 bits (115), Expect = 1e-05
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGF 61
AF+FGA G SG+ A + AGG G +T + F+F+ + T + +FGGT F
Sbjct: 711 AFSFGA--GQSGSTATSTPFAGGLGQNALGTTGQSTPFAFNVGSTTESKPVFGGTATPTF 768
Query: 62 GFGT---GFGTTTGTSTGLGTGLGTGLGFGG 89
G T G G T+G+S G GF G
Sbjct: 769 GLNTPAPGVG-TSGSSLSFGASSAPAQGFVG 798
Score = 40.0 bits (92), Expect = 0.005
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 3 FNFGAPSGTS-GTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNK-- 59
F+FGA + + G TA+ FG+T+ + + +AP +G+ G+ T
Sbjct: 648 FSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGSAAPAGSGSFGINVATPGSSA 707
Query: 60 ---GFGFGTGFGTTTGTSTGLGTGLG-TGLGFGGFNT 92
F FG G +T TST GLG LG G +T
Sbjct: 708 TTGAFSFGAGQSGSTATSTPFAGGLGQNALGTTGQST 744
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 47.8 bits (112), Expect = 2e-05
Identities = 57/194 (29%), Positives = 72/194 (37%), Gaps = 35/194 (18%)
Query: 3 FNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGS-AFSFSAPTNTGTTGLFGGTQNKGF 61
+N G S + AA + AGGFGG ++ AG F + G G FGG + G
Sbjct: 58 YNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGGFGSGYGGGFGGGFGGGRGMGG 117
Query: 62 GFG--TGFGTTTGTSTGLGTG----------------LGT--GLGFGGFNTQQQQQTTLG 101
GFG GFG G G G LG+ G G GGF Q+ T
Sbjct: 118 GFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPGSLGSPGGFGPGGFPGGIQEVTINQ 177
Query: 102 GLFS--------QPTQAPTQSNQLINT-----ASALSAPTLLGDERDAILAKWNQLQAFW 148
L Q Q Q + I T AS + L + + KWN LQ
Sbjct: 178 SLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQ-Q 236
Query: 149 GTGKGYFNNNIPPV 162
GT NN+ P+
Sbjct: 237 GTSSISGTNNLEPL 250
Score = 45.1 bits (105), Expect = 2e-04
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 10 GTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNK---------- 59
G G A + AGGFG + + S S G FGG ++
Sbjct: 37 GAGGGAYGFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGG 96
Query: 60 -GFGFGTGFGTTTGTSTGLGTGLGTGLGFGG 89
G G+G GFG G G+G G G GFGG
Sbjct: 97 FGSGYGGGFGGGFGGGRGMGGGFGGAGGFGG 127
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 14 TAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTG-FGTTTG 72
+++ T+A AGG+GG G FSA +G+ GG G GFG G G + G
Sbjct: 527 SSSTTSASAGGYGGGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGGIGGGFGGGSSGFSGG 586
Query: 73 TSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQA 110
+ G +G G+ GGF++ + ++ FSQ +Q+
Sbjct: 587 SGFGSISGARYGVSGGGFSSASNRGGSI--KFSQSSQS 622
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 47.0 bits (110), Expect = 4e-05
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGL----FGGTQNKG 60
F + SG G ++ GG G FG S GS FSA + G G FGG G
Sbjct: 47 FSSSSGYGGGSSRVCGRGGG-GSFGY-SYGGGSGGGFSASSLGGGFGGGSRGFGGASGGG 104
Query: 61 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGF 90
+ GFG G +G G G G G GFGGF
Sbjct: 105 YSSSGGFGGGFGGGSGGGFGGGYGSGFGGF 134
Score = 45.8 bits (107), Expect = 9e-05
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGT 65
G+ G+ G+ + GG GG + G + + G+ G +GG G G G
Sbjct: 511 GSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGG 570
Query: 66 GFGTTTGTSTGLGTGLGTGLGFGG 89
G+G +G+ G G G G GFGG
Sbjct: 571 GYGGGSGSRGGSGGSHGGGSGFGG 594
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 10 GTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGT 69
G SG + GG+GG + +G ++ + + G+ G +GG G G+G G
Sbjct: 491 GGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGH 550
Query: 70 TTGTSTGLGTGLGTGLGFGG 89
+ G+ G G G+G G GG
Sbjct: 551 SGGSGGNYGGGSGSGGGSGG 570
Score = 43.1 bits (100), Expect = 6e-04
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 4 NFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG- 62
+FG G +A+ GG GFG S G A ++ G G FGG GFG
Sbjct: 68 SFGYSYGGGSGGGFSASSLGG--GFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGG 125
Query: 63 -FGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLIN 119
+G+GFG G G G G G L +T Q+ + L + +N L N
Sbjct: 126 GYGSGFGGFGGFGGGAGGGDGGILTANEKSTMQELNSRLASYLDKVQALEEANNDLEN 183
Score = 37.7 bits (86), Expect = 0.025
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
SG S + G +GG G+ G + + + G+ G +GG G G G G+G
Sbjct: 481 SGGSYGRGSRGGSGGSYGGGGS-----GGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYG 535
Query: 69 TTTGTSTGLGTGLGTGLGFGG 89
+G G+G G G GG
Sbjct: 536 GGSGGGHSGGSGGGHSGGSGG 556
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGT 65
G+ G SG+ + GG G G + + G S G +G GG+ G G+G
Sbjct: 518 GSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGS---GGGYGG 574
Query: 66 GFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGG 102
G G+ G+ G G G G GG ++ + GG
Sbjct: 575 GSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGG 611
Score = 35.8 bits (81), Expect = 0.094
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 24 GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTST----GLGT 79
G GG G GS S+ + G+ G +GG + G G+G G G+ G+ G G+
Sbjct: 474 GLGGRG------GSGGSYGRGSRGGSGGSYGGGGSGG-GYGGGSGSRGGSGGSYGGGSGS 526
Query: 80 GLGTGLGFGG 89
G G+G G+GG
Sbjct: 527 GGGSGGGYGG 536
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 11 TSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTT 70
+SG GG GG + GS S+ G+ G +GG G G +G
Sbjct: 467 SSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYG---GGGSGGGYGGGSGSRGGSGGSYGGG 523
Query: 71 TGTSTGLGTGLGTGLGFG 88
+G+ G G G G G G G
Sbjct: 524 SGSGGGSGGGYGGGSGGG 541
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
+G SG + + +GG GG + +G +G+ G GG+ G GFG
Sbjct: 534 YGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFG 593
Query: 65 TGFGTTTGTSTGLGTGLGTGLGFGG 89
G + G+ G G+G G+GG
Sbjct: 594 ---GESGGSYGGGEEASGSGGGYGG 615
Score = 33.9 bits (76), Expect = 0.36
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 23 GGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG----FGTGFGTTTGTSTGLG 78
GG GG G+ + S FS+ G G F + G G G G G + G S G G
Sbjct: 17 GGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGG 76
Query: 79 TGLG-----TGLGFGG 89
+G G G GFGG
Sbjct: 77 SGGGFSASSLGGGFGG 92
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 46.2 bits (108), Expect = 7e-05
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 6 GAPSGTSGTAAATAAPAGGFGG-FGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
G S S + ++ A G FGG FG+ S G + + T G FGG GFG G
Sbjct: 45 GGASSCSLSGGSSGAFGGSFGGGFGSCSVGGGFGGASGSGTGFGGGSSFGGV--SGFGRG 102
Query: 65 TGFGTTTGTSTG-------LGTGLGTGLGFGGFNTQQQQQT 98
+GF ++ S+G G G+G G+G GG + ++QT
Sbjct: 103 SGFCGSSRFSSGATGGFYSYGGGMGGGVGDGGLFSGGEKQT 143
Score = 45.8 bits (107), Expect = 9e-05
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG--- 62
G S +A ++ +G G G +S + S + G++G FGG+ GFG
Sbjct: 13 GGSSSARVSAGGSSFSSGSRCGLGGSSAQGFRGGASSCSLSGGSSGAFGGSFGGGFGSCS 72
Query: 63 FGTGFGTTTGTSTGLG--------TGLGTGLGFGGFNTQQQQQTTLGGLFS 105
G GFG +G+ TG G +G G G GF G + T GG +S
Sbjct: 73 VGGGFGGASGSGTGFGGGSSFGGVSGFGRGSGFCGSSRFSSGAT--GGFYS 121
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 46.2 bits (108), Expect = 7e-05
Identities = 33/92 (35%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 10 GTSGTAAATAAPAGGFGGFGTTS------------TTAGSAFSFSAPTNTGTTGLFGGTQ 57
G G + A A G GG+G+ S +T+G +F G FGG
Sbjct: 42 GGGGFGRVSLAGACGVGGYGSRSLYNLGGSKRISISTSGGSFRNRFGAGAGGGYGFGGGA 101
Query: 58 NKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGG 89
GFGFG G G GLG G G G GFGG
Sbjct: 102 GSGFGFGGG----AGGGFGLGGGAGFGGGFGG 129
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
+G+ SG G GG GG G ++GS +S S+ G GL GG G GF
Sbjct: 502 YGSGSGYGGGLGGGLG--GGLGG-GLAGGSSGSYYSSSS----GGVGLGGGLSVGGSGF- 553
Query: 65 TGFGTTTGTSTGLGTGLGTGLGFGG 89
S G GLG G G GG
Sbjct: 554 ---------SASSGRGLGVGFGSGG 569
Score = 30.0 bits (66), Expect = 5.2
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 37 SAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTG------TSTGLGTGLGTGLGFGG 89
S + S + G+ +GG G G G G G G +S+ G GLG GL GG
Sbjct: 492 SVVTSSVSSGYGSGSGYGGGLGGGLGGGLGGGLAGGSSGSYYSSSSGGVGLGGGLSVGG 550
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 46.2 bits (108), Expect = 7e-05
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGF 61
AF+FGA G SG+ A + GG G +T + F+F+ + T + +FGGT F
Sbjct: 864 AFSFGA--GQSGSTATSTPFTGGLGQNALGTTGQSTPFAFNVGSTTESKPVFGGTATPTF 921
Query: 62 GFGT---GFGTTTGTSTGLGTGLGTGLGFGG 89
G T G G T+G+S G GF G
Sbjct: 922 GQNTPAPGVG-TSGSSLSFGASSAPAQGFVG 951
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 3 FNFGAPSGTS-GTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNK-- 59
F+FGA + + G TA+ FG+T+ + + +AP +G+ G+ T
Sbjct: 801 FSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGSAAPAGSGSFGINVATPGSSA 860
Query: 60 ---GFGFGTGFGTTTGTSTGLGTGLG-TGLGFGGFNT--------QQQQQTTLGG----L 103
F FG G +T TST GLG LG G +T + + GG
Sbjct: 861 TTGAFSFGAGQSGSTATSTPFTGGLGQNALGTTGQSTPFAFNVGSTTESKPVFGGTATPT 920
Query: 104 FSQPTQAP---TQSNQLINTASALSAPTLLG 131
F Q T AP T + L AS+ A +G
Sbjct: 921 FGQNTPAPGVGTSGSSLSFGASSAPAQGFVG 951
Score = 30.8 bits (68), Expect = 3.0
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 2 AFNFGAPSGTSGTAAATAAPAGG---------------FGG-----FGTTST-TAGSAFS 40
+F FG + + A T APA FGG FG +T +A A +
Sbjct: 729 SFTFGNSAAPAPATAPTPAPASTIKIVPAHVPTPIQPTFGGATHSAFGLKATASAFGAPA 788
Query: 41 FSAPTNTGTTGLF--GGTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGG 89
S P G+T +F G + GFG T ++ +S+ G+ + FGG
Sbjct: 789 SSQPAFGGSTAVFSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGG 839
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 45.8 bits (107), Expect = 9e-05
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 10 GTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNK-GF--GFGTG 66
G G A + AG FG + + + S S + G FGG ++ GF G+G G
Sbjct: 38 GAGGGACGFRSGAGSFGSRSLYNLGSNKSISISVAAGSSRAGGFGGGRSSCGFAGGYGGG 97
Query: 67 FGTTTGTSTGLGTGLGTGLGFGG 89
FG + G G G G G G GFGG
Sbjct: 98 FGGSYGG--GFGGGRGVGSGFGG 118
Score = 45.8 bits (107), Expect = 9e-05
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 3 FNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG 62
+N G+ S + AA ++ AGGFGG ++ AG G G FGG+ GFG
Sbjct: 59 YNLGSNKSISISVAAGSSRAGGFGGGRSSCGFAG-----------GYGGGFGGSYGGGFG 107
Query: 63 FGTGFGTTTGTSTGLGTGLGTGLGFGG 89
G G G+ G + G G G G GFGG
Sbjct: 108 GGRGVGSGFGGAGGFG---GAG-GFGG 130
Score = 35.8 bits (81), Expect = 0.094
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 32 STTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFN 91
++T+GS+ S + G+FGG G G G G+++ +S+G G G+G G+GG +
Sbjct: 513 TSTSGSSGS--------SRGVFGGVSGSGSGGYKG-GSSSSSSSGYGVSGGSGSGYGGVS 563
Query: 92 TQQQQQTTLGGLFSQPTQAPTQSNQLINTASALS 125
+ + GG S + + S + A ++S
Sbjct: 564 S-----GSTGGRGSSGSYQSSSSGSRLGGAGSIS 592
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
+ TSG++ ++ GG G G+ GS S S+ + G +G G G+G+G
Sbjct: 513 TSTSGSSGSSRGVFGGVSGSGSGGYKGGS--SSSSSSGYGVSG----------GSGSGYG 560
Query: 69 TTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGG 102
+ STG G G G + LGG
Sbjct: 561 GVSSGSTG-------GRGSSGSYQSSSSGSRLGG 587
Score = 30.8 bits (68), Expect = 3.0
Identities = 42/146 (28%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
+G G ++ AGG+GG S G + G G FGG GFG G G
Sbjct: 78 AGGFGGGRSSCGFAGGYGGGFGGSYGGGFGGGRGVGSGFGGAGGFGGA--GGFG-GPGVF 134
Query: 69 TTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGL----FSQPTQAPTQSNQLINT---- 120
G+ G G G G G GG Q+ L L Q Q Q + I T
Sbjct: 135 GGPGSFGGPG-GFGPGGFPGGIQEVIVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNK 193
Query: 121 -ASALSAPTLLGDERDAILAKWNQLQ 145
AS + L + + KW LQ
Sbjct: 194 FASFIDKVRFLEQQNKVLETKWELLQ 219
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 4 NFGAPSGTSGTA-----AATAAPAGGFGGFGTTSTT--------AGSAFSFSAPTNTGTT 50
N + SG+SG++ + + +GG+ G ++S++ +GS + + +TG
Sbjct: 511 NVTSTSGSSGSSRGVFGGVSGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTGGR 570
Query: 51 GLFGGTQNKGFGFGT-GFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQ 109
G G Q+ G G G+ + + +G+G+ G+ GG + + FSQ T
Sbjct: 571 GSSGSYQSSSSGSRLGGAGSISVSHSGMGSSSGSIQTSGGSGYKSGGGGSTSIRFSQTTS 630
Query: 110 APTQSN 115
+ S+
Sbjct: 631 SSQHSS 636
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 45.8 bits (107), Expect = 9e-05
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 16 AATAAPAGGFGGFGTTSTTAGSAFSFSAP--TNTGTTGLFGGTQNKGFGFGTGFGTTTGT 73
+++A+ GGFGG G+ G S + + G+ G +GG + GFG G G G G
Sbjct: 7 SSSASYGGGFGG-GSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGY 65
Query: 74 STGLGTGLGTGLGFGGF 90
GLG G G GLG GGF
Sbjct: 66 GGGLGGGYGGGLG-GGF 81
Score = 36.6 bits (83), Expect = 0.055
Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 21/85 (24%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGT 65
G T T + AGG+GG G + FGG GFG G
Sbjct: 26 GRGVSTCSTRFVSGGSAGGYGG--------------------GVSCGFGGGAGSGFGGGY 65
Query: 66 GFGTTTGTSTGLGTGLGTGLGFGGF 90
G G G GLG G G G GGF
Sbjct: 66 GGGLGGGYGGGLGGGFGGGFA-GGF 89
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 45.8 bits (107), Expect = 9e-05
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 16 AATAAPAGGFGGFGTTSTTAGSAFSFSAP--TNTGTTGLFGGTQNKGFGFGTGFGTTTGT 73
+++A+ GGFGG G+ G S + + G+ G +GG + GFG G G G G
Sbjct: 7 SSSASYGGGFGG-GSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGY 65
Query: 74 STGLGTGLGTGLGFGGF 90
GLG G G GLG GGF
Sbjct: 66 GGGLGGGYGGGLG-GGF 81
Score = 36.6 bits (83), Expect = 0.055
Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 21/85 (24%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGT 65
G T T + AGG+GG G + FGG GFG G
Sbjct: 26 GRGVSTCSTRFVSGGSAGGYGG--------------------GVSCGFGGGAGSGFGGGY 65
Query: 66 GFGTTTGTSTGLGTGLGTGLGFGGF 90
G G G GLG G G G GGF
Sbjct: 66 GGGLGGGYGGGLGGGFGGGFA-GGF 89
>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
Length = 1094
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 2/222 (0%)
Query: 266 EQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPV 325
E+ +KTQL + R EL+ K+ LQ K D E +
Sbjct: 524 EKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKN 583
Query: 326 PMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHR 385
+ L LK Q ++ Q + + E+I+EL+K+Q AK+ + + + DLS
Sbjct: 584 SLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAI 643
Query: 386 TLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFG 445
+ K + ++ A+ D L Q + + E A + +L + Q +++
Sbjct: 644 RADLANKLAEEERAKKAVLKDLSDLTAQAKS-RDEETATIITQLKLERDVHQRELKDLTS 702
Query: 446 AVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLED 487
+++S + + + ++ +K K++ E +H+ ++ + LE+
Sbjct: 703 SLQSVKTKH-EQNIQELMKHFKKEKSEAENHIRTLKAESLEE 743
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 43.1 bits (100), Expect = 6e-04
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 5 FGAPSGTSGTAAATAAPA---------GGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGG 55
FG G G A +APA G G GT + +AG F F + +NT + G
Sbjct: 1982 FGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGG-FGFGSSSNTTSFGTLAS 2040
Query: 56 TQNKGFGF----GTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQ 95
FG +GFGT + +G G+G G G FG N+ Q
Sbjct: 2041 QNAPTFGSLSQQTSGFGTQSSGFSGFGSGTG-GFSFGSNNSSVQ 2083
Score = 42.7 bits (99), Expect = 8e-04
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 17/98 (17%)
Query: 5 FGAPSGTSGTAA----ATAAPAGGFGGFGTTSTTA--GSAFSFSAPT----NTGTTGLFG 54
F +P G++G AA AGGFG FG++S T G+ S +APT + T+G
Sbjct: 2000 FTSPLGSTGGKVFGEGTAAASAGGFG-FGSSSNTTSFGTLASQNAPTFGSLSQQTSGF-- 2056
Query: 55 GTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNT 92
GTQ+ GF +GFG+ TG G+ + GFGG+ +
Sbjct: 2057 GTQSSGF---SGFGSGTG-GFSFGSNNSSVQGFGGWRS 2090
Score = 41.6 bits (96), Expect = 0.002
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
FG P+ ++ T+ + + FG +ST++ S+FSF + GLFG + FG
Sbjct: 1756 FGQPASSTPTSTSGSV----FGA--ASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQS 1809
Query: 65 TGF--------GTTTGTSTGLGTGLG--TGLGFGGFNTQQ---QQQTTLGGLFSQPTQAP 111
GF GT+ T+T +G GFG NT Q +T G +F Q + +
Sbjct: 1810 PGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSS 1869
Query: 112 TQS 114
+ S
Sbjct: 1870 SGS 1872
Score = 40.4 bits (93), Expect = 0.004
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 3 FNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFG-GTQNKGF 61
F+F P +S PA G T ++T+GS F ++ T++ ++ FG + N G
Sbjct: 1743 FSFSQPGFSS-------VPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGG 1795
Query: 62 G-FGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT 120
G FG G S G G G G FGG + T G F Q + + + +
Sbjct: 1796 GLFGQSNAPAFGQSPGFGQG---GSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFG 1852
Query: 121 ASALSAPTLLGDERD----AILAKWNQLQAFWGTGKGYFN--NNIPPVEFTQENPF 170
+A + + G + ++ N G G G+F+ P + +NPF
Sbjct: 1853 QAASTGGIVFGQQSSSSSGSVFGSGNT-----GRGGGFFSGLGGKPSQDAANKNPF 1903
Score = 37.7 bits (86), Expect = 0.025
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 29/127 (22%)
Query: 3 FNFGAPSGTSGTAAATAAPA----GGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFG---- 54
F F +P+ T G AA + GG GFG GSA +F++P + +FG
Sbjct: 1959 FGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAF-GSAPAFTSPLGSTGGKVFGEGTA 2017
Query: 55 GTQNKGFGFG-----TGFGT-------TTGTSTGLGTGLGT--------GLGFGGFNTQQ 94
GFGFG T FGT T G+ + +G GT G G GGF+
Sbjct: 2018 AASAGGFGFGSSSNTTSFGTLASQNAPTFGSLSQQTSGFGTQSSGFSGFGSGTGGFSFGS 2077
Query: 95 QQQTTLG 101
+ G
Sbjct: 2078 NNSSVQG 2084
Score = 35.0 bits (79), Expect = 0.16
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 29/177 (16%)
Query: 6 GAPSGTSGTAAATAAPAGGFGGFGTTSTT--------------AGSAFSFSAPTNTGTTG 51
G PS + ++ +GGFG T++T+ A S+F PT T ++G
Sbjct: 1891 GKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSG 1950
Query: 52 LFGGTQNKGFGFGT-----GFGTTTGTSTGLGTGLGTGLGFGG---FNTQQQQQTTLGG- 102
G ++GFGF + GFG G G GFGG F + + LG
Sbjct: 1951 -GGSVASQGFGFSSPNKTGGFG--AAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGST 2007
Query: 103 ---LFSQPTQAPTQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFN 156
+F + T A + ++S ++ L + +Q + +GT F+
Sbjct: 2008 GGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLSQQTSGFGTQSSGFS 2064
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 42.7 bits (99), Expect = 8e-04
Identities = 47/146 (32%), Positives = 59/146 (40%), Gaps = 29/146 (19%)
Query: 3 FNFGAPSGTSGTAAATAAPAGG-----------------FGGFGTTSTTAGSAFSFSAPT 45
F+FG+ + S T AA GG FG G+TST A + SAP+
Sbjct: 5 FSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATT----SAPS 60
Query: 46 NTGTTGLFGGTQNKGFGFGTGFGTTTGTSTGLGTGLGTGLGFG-GFNTQQQQQTTLG-GL 103
+ TGLFG GF G GT TGT T GF GFN T +
Sbjct: 61 SGFGTGLFGSKPATGFTLG---GTNTGTP---ATTSAATTGFSLGFNKPAASATPFALPI 114
Query: 104 FSQPTQAPTQSNQLINTASALSAPTL 129
S T S+ L +T +A + TL
Sbjct: 115 TSTSASGLTLSSALTSTPAASTGFTL 140
Score = 37.4 bits (85), Expect = 0.032
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 27 GFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG---------TTTGTSTGL 77
GF S T GS + T+TG FG + G FG TT+ S+G
Sbjct: 4 GFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPSSGF 63
Query: 78 GTGL-----GTGLGFGGFNTQQQQQTTLGGL-----FSQPTQAPTQSNQLINTASA 123
GTGL TG GG NT T+ F++P + T I + SA
Sbjct: 64 GTGLFGSKPATGFTLGGTNTGTPATTSAATTGFSLGFNKPAASATPFALPITSTSA 119
Score = 37.0 bits (84), Expect = 0.042
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 3 FNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGL-FGGTQNKGF 61
F FG + SG+ +A GFG++ST S F+FS P T + GL FG +
Sbjct: 517 FGFGTTNKPSGSLSA---------GFGSSST---SGFNFSNPGITASAGLTFGVSNPASA 564
Query: 62 GFGTG 66
GFGTG
Sbjct: 565 GFGTG 569
Score = 33.1 bits (74), Expect = 0.61
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
SG + ++A T+ PA +T T + +A T T +TGL G G G
Sbjct: 120 SGLTLSSALTSTPAA------STGFTLNNLGGTTATTTTASTGLSLGGALAGLGGSLFQS 173
Query: 69 TTTGTS----TGLGTGLGT----------GLGFGGFNTQQQQQTTLGGLFSQPTQAPTQS 114
T TGTS LG LGT GLG F++ +++ G + ++A
Sbjct: 174 TNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDE 233
Query: 115 N 115
N
Sbjct: 234 N 234
Score = 32.3 bits (72), Expect = 1.0
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 8 PSGTSGTAAATAAPAG-------GFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG 60
P T AAA A A G + + G+ F T ++GL G + G
Sbjct: 442 PFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGLQSSGL-GSSNLGG 500
Query: 61 FGFGTGFG-TTTGTST-GLGT------GLGTGLG---FGGFNTQQQQQTTLGGL 103
FG +GFG +TTG ST G GT L G G GFN T GL
Sbjct: 501 FGTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNPGITASAGL 554
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 42.4 bits (98), Expect = 0.001
Identities = 70/354 (19%), Positives = 139/354 (39%), Gaps = 49/354 (13%)
Query: 197 KKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVVERSPNGTSRRV 256
K+E + + ++L E +++ G +TL+ + T+V + ER + + +
Sbjct: 1958 KEEKALNLEMKRLAEEKMRLVEGKETLSKGETPETSRQRKMTQVEQELFERKLSLEEKIL 2017
Query: 257 PATTLYAHFEQANIK------TQLQQLGVTLSMTRTELSPAQIK--QLLQNPPAGVDPII 308
E++ I T+ Q++ V + S IK + L PA ++ I+
Sbjct: 2018 LHEDRILAMEESEIAKGKLEFTRGQRIFVQGQRKLAKASRKLIKKRESLSKEPAKLNKIL 2077
Query: 309 WEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTS 368
K+ E+ + + ++ R L V+++ Q++LDI D SE + T
Sbjct: 2078 KALQKLTR--DERKLTQEEIKMTKMKRALFVKERRLSIEQSKLDIKEWDFSEKRSELTKD 2135
Query: 369 VAKIAQYKRKLMDLSHRTLQVLIK-----QEIQRKSGYAIQADEEQ-------------- 409
K+A+ +RKL + R + K ++ RK I DEE+
Sbjct: 2136 EKKLARKQRKLANKMRRMINKEEKMTEEESKLARKHSEVILDDEEEGGIEEEEVIPFLKR 2195
Query: 410 -----------------LRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGAVRSEER 452
Q+D ++ E + + + L+EL Q + + R EE
Sbjct: 2196 RWRKRKEAKRGDKPKEKFSSQVDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEE 2255
Query: 453 YYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEHGLNETIHIRGGVF 506
+ + +RE ++ K+++EG + K++ E K + E + + VF
Sbjct: 2256 ER-EEEEVREEEEERKEEEEGEEKQVE--KEEEEKKKKKKEKKKEEVQEKEEVF 2306
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 42.4 bits (98), Expect = 0.001
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 10 GTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPT----NTGTTGLFGGTQNKGFGFGT 65
G S + A GGFGG G+ S GS S SA + ++G+ G +GG + GFG
Sbjct: 15 GGSTRGGSLLAGGGGFGG-GSLSGGGGSR-SISASSARFVSSGSGGGYGGGM-RVCGFGG 71
Query: 66 GFGTTTGTSTGLGTGLGTGLGFGG 89
G G+ G G G G G G GFGG
Sbjct: 72 GAGSVFGGGFGGGVGGGFGGGFGG 95
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 42.4 bits (98), Expect = 0.001
Identities = 47/158 (29%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 5 FGAPS--GTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFG 62
FG+ S G GT + + + AGG GGFG G F ++ G F G G G
Sbjct: 58 FGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGFSGGGFGGGG 117
Query: 63 FG----TGFGTTTGTSTGLG--TGLGTGLGFGGFNTQQQQQTTLGGL----FSQPTQAPT 112
FG GFG G GLG G G G GG + Q+ L L +
Sbjct: 118 FGGGRFGGFGGPGGVG-GLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVKVDPEIQNVKA 176
Query: 113 QSNQLINT-----ASALSAPTLLGDERDAILAKWNQLQ 145
Q + I T AS + L + + KW LQ
Sbjct: 177 QEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQ 214
Score = 37.4 bits (85), Expect = 0.032
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 23 GGFGG--FGTTSTTA---GSAFSFSAPTNTGTTGLFGGTQNKGFGFGTG--FGTTTGTST 75
GGFGG FG+ S + S S G G GG +G GFG G FG +G S
Sbjct: 51 GGFGGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGFSG 110
Query: 76 GLGTGLGTGLG-FGGF 90
G G G G G FGGF
Sbjct: 111 GGFGGGGFGGGRFGGF 126
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 9 SGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
S T + A+ A GG GG G++S S+ S S + +G GG+ G G G+G
Sbjct: 505 SSTISSNVASKAAFGGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYG 564
Query: 69 TTTGTSTGLGTGLGT---GLGFGGFNTQQQQQTTLGG 102
+ G+ G+G G+ + GG+ + + ++ GG
Sbjct: 565 SGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGG 601
>gi|239752328 PREDICTED: hypothetical protein XP_002348200 [Homo
sapiens]
Length = 174
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/78 (39%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 11 TSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTT 70
T+GT AAT A GT+ST A S + G G + G GTG GT
Sbjct: 18 TTGTRAATGA--------GTSSTKA------SEEPKCESGGQAGTSTEATTGAGTGTGTV 63
Query: 71 TGTSTGLGTGLGTGLGFG 88
GT TG G T LGFG
Sbjct: 64 IGTGTGTSAGTATLLGFG 81
>gi|239746841 PREDICTED: hypothetical protein XP_002344236 [Homo
sapiens]
Length = 174
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/78 (39%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 11 TSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTT 70
T+GT AAT A GT+ST A S + G G + G GTG GT
Sbjct: 18 TTGTRAATGA--------GTSSTKA------SEEPKCESGGQAGTSTEATTGAGTGTGTV 63
Query: 71 TGTSTGLGTGLGTGLGFG 88
GT TG G T LGFG
Sbjct: 64 IGTGTGTSAGTATLLGFG 81
>gi|6679074 nucleoporin like 2 [Homo sapiens]
Length = 423
Score = 42.0 bits (97), Expect = 0.001
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 19 AAPAGGFG----------GFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFG 68
AAPA GFG GF ++++ +A +FS TN+G G+ GFG FG
Sbjct: 214 AAPAFGFGSSQAATFMSPGFPVNNSSSDNAQNFSFKTNSGFAAASSGSP-AGFGSSPAFG 272
Query: 69 TTTGTSTGLGTGLGTGLGFG 88
TS+G+ T GFG
Sbjct: 273 AAASTSSGISTS-APAFGFG 291
Score = 35.0 bits (79), Expect = 0.16
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 5 FGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFG 64
FGA + TS + +T+APA GFG T+ ++FSF +P + FG + GF
Sbjct: 271 FGAAASTS-SGISTSAPAFGFG---KPEVTSAASFSFKSPAASS----FG---SPGFSGL 319
Query: 65 TGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINTASAL 124
T + G G GF + T FS+P+ + T N I+T+ +
Sbjct: 320 PASLATGPVRAPVAPAFGGGSSVAGFGSPGSHSHT---AFSKPS-SDTFGNSSISTSLSA 375
Query: 125 SAPTLLGD 132
S+ + D
Sbjct: 376 SSSIIATD 383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,642,474
Number of Sequences: 37866
Number of extensions: 879539
Number of successful extensions: 5418
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 3472
Number of HSP's gapped (non-prelim): 1157
length of query: 507
length of database: 18,247,518
effective HSP length: 107
effective length of query: 400
effective length of database: 14,195,856
effective search space: 5678342400
effective search space used: 5678342400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.