Guide to the Human Genome
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Name: LOC100291523 Sequence: fasta or formatted (174aa) NCBI GI: 239752328
Description:

PREDICTED: hypothetical protein XP_002348200

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         13           2
 C cysteine            2.9          5           1
 D aspartate           1.1          2           1
 E glutamate           3.4          6           2
 F phenylalanine       5.2          9           1
 G glycine            14.4         25           2
 H histidine           1.1          2           1
 I isoleucine          5.2          9           1
 K lysine              2.3          4           1
 L leucine            11.5         20           3
 M methionine          0.6          1           1
 N asparagine          1.7          3           1
 P proline             6.9         12           1
 Q glutamine           2.3          4           1
 R arginine            4.0          7           1
 S serine             14.9         26           3
 T threonine          11.5         20           2
 V valine              3.4          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348200 
LOC100288052          1.000   PREDICTED: hypothetical protein XP_002344236 
TRO                   0.066   trophinin isoform 5 
NUP214                0.053   nucleoporin 214kDa 
NUP54                 0.053   nucleoporin 54kDa 
KIF26A                0.047   kinesin family member 26A 
DACH1                 0.044   dachshund homolog 1 isoform b 
DACH1                 0.044   dachshund homolog 1 isoform a 
DACH1                 0.044   dachshund homolog 1 isoform c 
MAGEE1                0.044   melanoma antigen family E, 1 
LOC729792             0.041   PREDICTED: hypothetical protein 
LOC100294501          0.041   PREDICTED: hypothetical protein 
LOC100294249          0.041   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.041   PREDICTED: hypothetical protein 
LOC100294204          0.041   PREDICTED: hypothetical protein 
LOC729792             0.041   PREDICTED: hypothetical protein 
LOC730401             0.041   PREDICTED: hypothetical protein 
MUC21                 0.037   mucin 21 
KRT3                  0.037   keratin 3 
SPAG8                 0.037   sperm associated antigen 8 isoform 1 
SPAG8                 0.037   sperm associated antigen 8 isoform 2 
NUP98                 0.034   nucleoporin 98kD isoform 4 
NUP98                 0.034   nucleoporin 98kD isoform 1 
NUP98                 0.034   nucleoporin 98kD isoform 2 
LOC100134320          0.034   PREDICTED: hypothetical protein 
ELN                   0.031   elastin isoform d precursor 
ELN                   0.031   elastin isoform a precursor 
KRT9                  0.031   keratin 9 
LOC729792             0.031   PREDICTED: hypothetical protein 
LOC100294136          0.031   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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