NUP54 24210

Name: NUP54	Sequence: fasta or formatted (507aa)		NCBI GI: 26051237
Description: nucleoporin 54kDa		Referenced in: Nucleus and Nucleolus
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 32 3 C cysteine 0.4 2 1 D aspartate 3.9 20 2 E glutamate 5.7 29 2 F phenylalanine 4.7 24 1 G glycine 9.9 50 2 H histidine 1.8 9 1 I isoleucine 5.3 27 2 K lysine 5.3 27 2 L leucine 9.7 49 2 M methionine 1.6 8 1 N asparagine 4.7 24 3 P proline 4.1 21 2 Q glutamine 9.5 48 5 R arginine 3.9 20 2 S serine 5.9 30 1 T threonine 9.9 50 3 V valine 5.1 26 2 W tryptophan 0.6 3 1 Y tyrosine 1.6 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 54kDa NUP98 0.035 nucleoporin 98kD isoform 4 NUP98 0.035 nucleoporin 98kD isoform 3 NUP98 0.035 nucleoporin 98kD isoform 1 NUP98 0.035 nucleoporin 98kD isoform 2 TRO 0.028 trophinin isoform 5 NUP62 0.027 nucleoporin 62kDa NUP62 0.027 nucleoporin 62kDa NUP62 0.027 nucleoporin 62kDa NUP62 0.027 nucleoporin 62kDa NUPL1 0.024 nucleoporin like 1 isoform a POM121 0.024 nuclear pore membrane protein 121 LOC100288540 0.024 PREDICTED: hypothetical protein XP_002342775 KRT3 0.023 keratin 3 KRT9 0.022 keratin 9 KRT24 0.021 keratin 24 KRT5 0.021 keratin 5 POM121C 0.021 POM121 membrane glycoprotein (rat)-like KRT76 0.021 keratin 76 KRT13 0.021 keratin 13 isoform b KRT13 0.021 keratin 13 isoform a C14orf145 0.020 hypothetical protein LOC145508 NUP214 0.018 nucleoporin 214kDa NUPL1 0.018 nucleoporin like 1 isoform b WDR87 0.017 NYD-SP11 protein KRT15 0.017 keratin 15 KRT2 0.017 keratin 2 LOC100291523 0.017 PREDICTED: hypothetical protein XP_002348200 LOC100288052 0.017 PREDICTED: hypothetical protein XP_002344236 NUPL2 0.017 nucleoporin like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.