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Search of human proteins with 253795516
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|253795516 choline phosphate cytidylyltransferase 1 beta
isoform 3 [Homo sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|253795516 choline phosphate cytidylyltransferase 1 beta isofo... 677 0.0
gi|21361202 choline phosphate cytidylyltransferase 1 beta isofor... 658 0.0
gi|253795514 choline phosphate cytidylyltransferase 1 beta isofo... 582 e-166
gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo... 464 e-131
gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo ... 104 1e-22
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.21
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.21
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.21
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 33 0.27
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.35
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 33 0.35
gi|10880975 hypothetical protein LOC57821 [Homo sapiens] 33 0.35
gi|188528616 testis specific, 10 [Homo sapiens] 32 0.78
gi|13376858 testis specific, 10 [Homo sapiens] 32 0.78
gi|239752551 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 31 1.3
gi|4758648 kinesin family member 5B [Homo sapiens] 31 1.3
gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member ... 31 1.3
gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member ... 31 1.3
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 31 1.3
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 31 1.3
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 31 1.3
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 31 1.3
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 31 1.3
gi|188497618 connector enhancer of kinase suppressor of Ras 1 [H... 31 1.7
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 30 2.3
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 30 2.3
gi|33188445 microfilament and actin filament cross-linker protei... 30 2.3
gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom... 30 2.3
gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom... 30 2.3
>gi|253795516 choline phosphate cytidylyltransferase 1 beta isoform
3 [Homo sapiens]
Length = 330
Score = 677 bits (1747), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE
Sbjct: 1 MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
Query: 61 KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK
Sbjct: 61 KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
Query: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD
Sbjct: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
Query: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY
Sbjct: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
Query: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK
Sbjct: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
Query: 301 QMFQERSSRMLQALSPKQSPLKSWARCRDF 330
QMFQERSSRMLQALSPKQSPLKSWARCRDF
Sbjct: 301 QMFQERSSRMLQALSPKQSPLKSWARCRDF 330
>gi|21361202 choline phosphate cytidylyltransferase 1 beta isoform 1
[Homo sapiens]
Length = 369
Score = 658 bits (1698), Expect = 0.0
Identities = 323/328 (98%), Positives = 324/328 (98%)
Query: 1 MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE
Sbjct: 1 MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
Query: 61 KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK
Sbjct: 61 KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
Query: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD
Sbjct: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
Query: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY
Sbjct: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
Query: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK
Sbjct: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
Query: 301 QMFQERSSRMLQALSPKQSPLKSWARCR 328
QMFQERSSRMLQALSPKQSP+ S R R
Sbjct: 301 QMFQERSSRMLQALSPKQSPVSSPTRSR 328
>gi|253795514 choline phosphate cytidylyltransferase 1 beta isoform
2 [Homo sapiens]
Length = 351
Score = 582 bits (1499), Expect = e-166
Identities = 289/305 (94%), Positives = 293/305 (96%), Gaps = 1/305 (0%)
Query: 25 ETMEEIEHTCPQP-RLTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 83
E + E ++ PQ R TLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG
Sbjct: 6 ECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 65
Query: 84 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 143
IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD
Sbjct: 66 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 125
Query: 144 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 203
EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS
Sbjct: 126 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 185
Query: 204 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 263
DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF
Sbjct: 186 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 245
Query: 264 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKS 323
VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSP+ S
Sbjct: 246 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 305
Query: 324 WARCR 328
R R
Sbjct: 306 PTRSR 310
>gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo
sapiens]
Length = 367
Score = 464 bits (1195), Expect = e-131
Identities = 224/288 (77%), Positives = 253/288 (87%)
Query: 41 LTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAK 100
L PAPF+DE P+ ++T+ +A GTP +RPVRVYADGIFDLFHSGHARALMQAK
Sbjct: 41 LRQPAPFSDEIEVDFSKPYVRVTMEEASRGTPCERPVRVYADGIFDLFHSGHARALMQAK 100
Query: 101 TLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEK 160
LFPN+YL+VGVCSD+LTH FKGFTVMNE ERY+A++HCRYVDEV+R+APWTLTPEFL +
Sbjct: 101 NLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAE 160
Query: 161 HKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRN 220
H+IDFVAHDDIPYSSAGSDDVYKHIKEAGMF PTQRTEGISTSDIITRIVRDYDVYARRN
Sbjct: 161 HRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRN 220
Query: 221 LQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEE 280
LQRGYTAKELNVSFINEK+Y Q +VDK+K+KVK+VEE+SKEFV +VEEKS DLIQKWEE
Sbjct: 221 LQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEE 280
Query: 281 KSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKSWARCR 328
KSREFIG+FLE+FGP+GA K M +E RMLQA+SPKQSP S R R
Sbjct: 281 KSREFIGSFLEMFGPEGALKHMLKEGKGRMLQAISPKQSPSSSPTRER 328
>gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo
sapiens]
Length = 389
Score = 104 bits (259), Expect = 1e-22
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 70 GTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNE 129
G R VRV+ DG +D+ H GH+ L QA+ + YL+VGV +D+ K KG V +
Sbjct: 16 GPGGRRAVRVWCDGCYDMVHYGHSNQLRQARAM--GDYLIVGVHTDEEIAKHKGPPVFTQ 73
Query: 130 AERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAG 189
ERY+ ++ ++VDEV+ AP+ T E L+K+ DF H + + D Y+ +K+AG
Sbjct: 74 EERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 133
Query: 190 MFVPTQRTEGISTSDIITRIV 210
+ +RT+G+ST+D++ R++
Sbjct: 134 RYRECKRTQGVSTTDLVGRML 154
Score = 82.4 bits (202), Expect = 5e-16
Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEAL 136
+Y G FDLFH GH L + L Y++ G+ D + +KG + +MN ER ++
Sbjct: 216 IYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSV 275
Query: 137 RHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAH--DDIPYSSAGSDDVYKHIKEAGMFVPT 194
CRYV EV+ AP+ +T E L K+D V H +I GSD Y+ K G+F
Sbjct: 276 LACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDP-YQEPKRRGIFRQI 334
Query: 195 QRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 230
++T I+ RI+ + Y RN ++ AKEL
Sbjct: 335 DSGSNLTTDLIVQRIITNRLEYEARNQKK--EAKEL 368
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.21
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 178 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 236 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.21
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 178 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 236 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.21
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 178 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 236 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 33.5 bits (75), Expect = 0.27
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2 PVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHEK 61
PV+TT +P SL E S T+ P+LT TAPAP + P
Sbjct: 1334 PVITT-----VSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPA 1388
Query: 62 LTIAQARLGT 71
L + +R T
Sbjct: 1389 LESSPSRSST 1398
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.1 bits (74), Expect = 0.35
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEE---------RSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK +R + ++ + +EK++ EE R +E + R EEK H+ + WEE+ R+
Sbjct: 510 EKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQ 566
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK ++ + ++ + +EK++ EE+ +E ++ E+ ++ Q+ EEK E
Sbjct: 605 EKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQ-EEMTQEQEEKMGE 651
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 197 TEGISTSDIITRIVRDYDVYARRNLQRGYTAKE-LNVSFINEKR---------YRFQNQV 246
TE IS D I+ R D+ + +N+ + E L+ I ++R +FQN++
Sbjct: 580 TENISQGDRISE--RKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKL 637
Query: 247 DKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKS 282
++ E+ K +EE KE + ++E D K E S
Sbjct: 638 KELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETS 673
>gi|10880975 hypothetical protein LOC57821 [Homo sapiens]
Length = 508
Score = 33.1 bits (74), Expect = 0.35
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQK-WEEKSRE 284
++ ++ Q Q+++ +EK+K EER K + +++ +D++ K W +K RE
Sbjct: 335 LSPRQKELQKQLEEKREKLKREEERRKIEEEKEKKRENDIVFKAWLQKKRE 385
>gi|188528616 testis specific, 10 [Homo sapiens]
Length = 698
Score = 32.0 bits (71), Expect = 0.78
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 192 VPTQRTEGISTSDIITRIVRDYDVYARRN--LQRGYTAKELNVSFINEKRYRFQNQVDKM 249
V R + T+D + +I R+ D+ A N LQ + + +++K N+++ +
Sbjct: 326 VSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDI 385
Query: 250 KEKVK--NVEERSKEFVNRVEE-----------KSHDLIQKWEEKSRE 284
K+KV+ N+E + + + EE K+++ + WE K+R+
Sbjct: 386 KQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQ 433
>gi|13376858 testis specific, 10 [Homo sapiens]
Length = 698
Score = 32.0 bits (71), Expect = 0.78
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 192 VPTQRTEGISTSDIITRIVRDYDVYARRN--LQRGYTAKELNVSFINEKRYRFQNQVDKM 249
V R + T+D + +I R+ D+ A N LQ + + +++K N+++ +
Sbjct: 326 VSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDI 385
Query: 250 KEKVK--NVEERSKEFVNRVEE-----------KSHDLIQKWEEKSRE 284
K+KV+ N+E + + + EE K+++ + WE K+R+
Sbjct: 386 KQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQ 433
>gi|239752551 PREDICTED: hypothetical protein [Homo sapiens]
Length = 238
Score = 31.6 bits (70), Expect = 1.0
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 237 EKRYRFQN---QVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 284
E+R R Q QV+KM+EK K EE+ +E +++E+ +++ + EEK +E
Sbjct: 94 EERMREQKMWQQVEKMREKKKTQEEKMQEQEEKMQEQ-EEMMWEQEEKMQE 143
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 215 VYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEE--RSKEFVNRVEEKSH 272
++ + ++ +E + E++ R Q ++ + KEK+ E+ + +E V R EEK H
Sbjct: 446 IHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMH 505
Query: 273 DLIQK--------W--EEKSREFIGNFLELFGPDGAWKQMFQERSSRM 310
D +K W EEK RE E ++M QE+ +M
Sbjct: 506 DQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQEEKM 553
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 23/107 (21%)
Query: 179 DDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEK 238
DD + I + V +T+ + +++ RD D N+Q ELN
Sbjct: 433 DDKDEEINQQSQLVEKLKTQMLDQEELLASTRRDQD-----NMQA-----ELN------- 475
Query: 239 RYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREF 285
R Q + D KE+VK V + +E ++KS Q+ E+K++E+
Sbjct: 476 --RLQAENDASKEEVKEVLQALEELAVNYDQKS----QEVEDKTKEY 516
>gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 220 NLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSH 272
N+QRG+ + EK + N+ D +KE + E + E V ++E +
Sbjct: 763 NIQRGFIESRKKDLMLEEKNKKLMNEYDHLKESLFQYERQKAETVVSIKEDKY 815
>gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 220 NLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSH 272
N+QRG+ + EK + N+ D +KE + E + E V ++E +
Sbjct: 763 NIQRGFIESRKKDLMLEEKNKKLMNEYDHLKESLFQYERQKAETVVSIKEDKY 815
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 215 VYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEE---RSKEFVNRVEEKS 271
++ + ++ +E + E++ R Q ++ + KEK+ EE + +E + R EEK
Sbjct: 507 IHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKM 566
Query: 272 HDLIQK--------W--EEKSREFIGNFLELFGPDGAWKQMFQERSSRM 310
HD +K W EEK RE E ++M QE+ +M
Sbjct: 567 HDQEEKIREQEEKVWRQEEKIREQEEKIREQEEKIREQEEMTQEQEEKM 615
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/120 (17%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 212 DYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEK- 270
D ++ A++NL+R + + +S +K F + V+ ++E K ++ + + EEK
Sbjct: 1353 DEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKA 1412
Query: 271 -SHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKSWARCRD 329
++D ++K + + ++ + + + +++ + Q L+ +++ +A RD
Sbjct: 1413 AAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLLAEEKNISSKYADERD 1472
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/120 (17%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 212 DYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEK- 270
D ++ A++NL+R + + +S +K F + V+ ++E K ++ + + EEK
Sbjct: 1360 DEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKA 1419
Query: 271 -SHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKSWARCRD 329
++D ++K + + ++ + + + +++ + Q L+ +++ +A RD
Sbjct: 1420 AAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLLAEEKNISSKYADERD 1479
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/120 (17%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 212 DYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEK- 270
D ++ A++NL+R + + +S +K F + V+ ++E K ++ + + EEK
Sbjct: 1360 DEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKA 1419
Query: 271 -SHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKSWARCRD 329
++D ++K + + ++ + + + +++ + Q L+ +++ +A RD
Sbjct: 1420 AAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLLAEEKNISSKYADERD 1479
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/120 (17%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 212 DYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEK- 270
D ++ A++NL+R + + +S +K F + V+ ++E K ++ + + EEK
Sbjct: 1353 DEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKA 1412
Query: 271 -SHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKSWARCRD 329
++D ++K + + ++ + + + +++ + Q L+ +++ +A RD
Sbjct: 1413 AAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLLAEEKNISSKYADERD 1472
>gi|188497618 connector enhancer of kinase suppressor of Ras 1 [Homo
sapiens]
Length = 713
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFG 294
+NE+ +R + +K K++ ++ E V E + + ++W+E++RE L
Sbjct: 609 LNERVHRVRALQSTLKAKLQELQVL--EEVLGDPELTGEKFRQWKEQNRELYSEGL---- 662
Query: 295 PDGAWKQMFQERSSRMLQALSPKQSP 320
GAW E SS +L + S +QSP
Sbjct: 663 --GAWGVAQAEGSSHILTSDSTEQSP 686
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEE---RSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK +R + ++ + EK++ EE R +E + EEK + + + E+K RE
Sbjct: 367 EKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMRE 417
Score = 29.3 bits (64), Expect = 5.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK + + +EK++ VEE+ +E +++E+ + IQ+ EEK +E
Sbjct: 434 EKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQ-EEKIQRQEEKIQE 480
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEE---RSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK +R + ++ + EK++ EE R +E + EEK + + + E+K RE
Sbjct: 367 EKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMRE 417
Score = 29.3 bits (64), Expect = 5.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 237 EKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 284
EK + + +EK++ VEE+ +E +++E+ + IQ+ EEK +E
Sbjct: 434 EKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQ-EEKIQRQEEKIQE 480
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 30.4 bits (67), Expect = 2.3
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 182 YKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYR 241
YK E+ P +R +S+SD IT+ D L+ YTA V+ +
Sbjct: 1357 YKAFVESQQKSPGKRRRMLSSSDAITQEFMD--------LRTRYTAL---VTLTTQHVKY 1405
Query: 242 FQNQVDKMKEKVKNVEERSKEFVNRVEE 269
+ + +++E+ K VEE +E V +V+E
Sbjct: 1406 ISDALRRLEEEEKVVEEEKQEHVEKVKE 1433
>gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo
sapiens]
Length = 1133
Score = 30.4 bits (67), Expect = 2.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFL 290
+ EK Y + D +K K+K EE+ + ++RV + L Q E ++F+ N L
Sbjct: 553 VEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRL-QSLEAIEKDFLKNKL 607
>gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo
sapiens]
Length = 893
Score = 30.4 bits (67), Expect = 2.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFL 290
+ EK Y + D +K K+K EE+ + ++RV + L Q E ++F+ N L
Sbjct: 313 VEEKMYSVTKERDDLKNKLKAEEEKGNDLLSRVNMLKNRL-QSLEAIEKDFLKNKL 367
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,711,100
Number of Sequences: 37866
Number of extensions: 587976
Number of successful extensions: 2986
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2777
Number of HSP's gapped (non-prelim): 289
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.