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Search of human proteins with 25121993
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25121993 musashi 2 isoform b [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25121993 musashi 2 isoform b [Homo sapiens] 519 e-147
gi|20373175 musashi 2 isoform a [Homo sapiens] 463 e-131
gi|4505255 musashi 1 [Homo sapiens] 376 e-105
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 178 3e-45
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 177 6e-45
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 176 2e-44
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 167 6e-42
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 167 6e-42
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 167 6e-42
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 167 6e-42
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 165 4e-41
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 165 4e-41
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 160 1e-39
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 158 4e-39
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 158 4e-39
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 156 2e-38
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 156 2e-38
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 155 4e-38
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 155 4e-38
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 151 6e-37
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 140 1e-33
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 140 1e-33
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 140 1e-33
gi|6678271 TAR DNA binding protein [Homo sapiens] 92 4e-19
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 79 4e-15
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 79 4e-15
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 77 1e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 77 1e-14
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 77 2e-14
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 76 2e-14
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 519 bits (1336), Expect = e-147
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 60
MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF
Sbjct: 1 MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 60
Query: 61 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 120
GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE
Sbjct: 61 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 120
Query: 121 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 180
DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK
Sbjct: 121 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 180
Query: 181 AQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
AQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY
Sbjct: 181 AQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
Query: 241 LPVSQDIIFIN 251
LPVSQDIIFIN
Sbjct: 241 LPVSQDIIFIN 251
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 463 bits (1192), Expect = e-131
Identities = 221/223 (99%), Positives = 222/223 (99%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR 197
MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR
Sbjct: 142 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR 201
Query: 198 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFP +
Sbjct: 202 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGF 244
Score = 75.1 bits (183), Expect = 5e-14
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
M + + K+F+GGLS T + ++ YF +FG++ + M+M D TT R RGFGFVTF + V
Sbjct: 105 MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV 164
Query: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKMV 102
+KV HE+++K ++ K +AQPK V
Sbjct: 165 EKVCEIHFHEINNKMVECK-----KAQPKEV 190
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 376 bits (966), Expect = e-105
Identities = 182/226 (80%), Positives = 198/226 (87%), Gaps = 3/226 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSWQT+ + LR+YF +FGE++EC+VMRDP TKRSRGFGFVTF D A VDKVL Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLS NT VEDVKQYFEQFGKV+DAML
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGT-RGRA 196
MFDKTTNRHRGFGFVTFE+ED+VEKVCEIHFHEINNKMVECKKAQPKEVM P G+ RGR+
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
Query: 197 RGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPSYGYQFPDY 240
R +PY MDAFMLG+GMLGYP F AT R Y G AP Y YQFP++
Sbjct: 201 RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEF 246
Score = 75.1 bits (183), Expect = 5e-14
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 94 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 153
P A P K+F+GGLS T E +++YF QFG+V++ ++M D T R RGFGFVT
Sbjct: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67
Query: 154 FENEDVVEKVCEIHFHEINNKMVECK-----KAQPKEV 186
F ++ V+KV HE+++K ++ K +AQPK V
Sbjct: 68 FMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 75.1 bits (183), Expect = 5e-14
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
M + + K+F+GGLS T+ + ++ YF +FG++ + M+M D TT R RGFGFVTF V
Sbjct: 104 MVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV 163
Query: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKMV 102
+KV HE+++K ++ K +AQPK V
Sbjct: 164 EKVCEIHFHEINNKMVECK-----KAQPKEV 189
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 178 bits (452), Expect = 3e-45
Identities = 104/241 (43%), Positives = 132/241 (54%), Gaps = 25/241 (10%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFGFV F D ASVDKVL
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
H+LD K IDPK R K KK+FVGGLS +T E +K+YF FG++E+ L
Sbjct: 209 KEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
D TN RGF F+T+ +E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 265 PMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGG 324
Query: 191 ---------GTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG--RGYPGFAPSYGYQFPD 239
GTRGR RG + GY N+ + YG + Y G+ GY +
Sbjct: 325 RGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG---GYDYTG 381
Query: 240 Y 240
Y
Sbjct: 382 Y 382
Score = 67.8 bits (164), Expect = 9e-12
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGLS TS + +++YF FGEI + D T RGF F+T+ D V K+
Sbjct: 231 PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKK 107
L +H++ S + KV AQPK V R ++
Sbjct: 291 LESRYHQIGSGKCEIKV-----AQPKEVYRQQQ 318
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 177 bits (450), Expect = 6e-45
Identities = 102/236 (43%), Positives = 131/236 (55%), Gaps = 17/236 (7%)
Query: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
+ KMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRGFGF+ F D ASV+KVL
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Q H LD + IDPK A + P KKIFVGGL+ E +++YF +FG++E
Sbjct: 129 DQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV----MFPPG 191
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV + G
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
Query: 192 TRGRARGLPYTMDAFMLGMGM-----LGYPNFVATYGRGY-PGFAPSY-GYQFPDY 240
RG G G GY N+ G GY G+ P Y GY + Y
Sbjct: 244 GRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNY-WNQGYGYQQGYGPGYGGYDYSPY 298
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGL+ + + + +R+YF +FGEI + DP + RGF F+TF + V KV
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGG 112
L + H + + KV AQPK V + ++ GG
Sbjct: 212 LEKKFHTVSGSKCEIKV-----AQPKEVYQQQQYGSGG 244
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 176 bits (446), Expect = 2e-44
Identities = 91/188 (48%), Positives = 117/188 (62%), Gaps = 10/188 (5%)
Query: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
+ KMF+GGLSW TS L+DYF+KFGE+ +C + DP T RSRGFGF+ F D ASV+KVL
Sbjct: 69 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 128
Query: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Q H LD + IDPK A + P KKIFVGGL+ E +++YF +FG++E
Sbjct: 129 DQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAI 183
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV----MFPPG 191
L D N+ RGF F+TF+ E+ V+KV E FH ++ E K AQPKEV + G
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSG 243
Query: 192 TRG-RARG 198
RG R RG
Sbjct: 244 GRGNRNRG 251
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGL+ + + + +R+YF +FGEI + DP + RGF F+TF + V KV
Sbjct: 152 PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGG 112
L + H + + KV AQPK V + ++ GG
Sbjct: 212 LEKKFHTVSGSKCEIKV-----AQPKEVYQQQQYGSGG 244
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 167 bits (424), Expect = 6e-42
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 14/182 (7%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSANTVVEDVK 123
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 124 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 183
+YF++FG V + ++++D R RGFGF+TFE+E V++ +HFH+I K VE K+A+P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 184 KE 185
++
Sbjct: 191 RD 192
Score = 72.0 bits (175), Expect = 5e-13
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
S S+K+F+GG+ LR+YF KFG + E +++ D +R RGFGF+TF D SVD+
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 74 VLGQPHHELDSKTIDPKVAFPR 95
+ H++ K ++ K A PR
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPR 191
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 167 bits (424), Expect = 6e-42
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 14/182 (7%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSANTVVEDVK 123
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 124 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 183
+YF++FG V + ++++D R RGFGF+TFE+E V++ +HFH+I K VE K+A+P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 184 KE 185
++
Sbjct: 191 RD 192
Score = 72.0 bits (175), Expect = 5e-13
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
S S+K+F+GG+ LR+YF KFG + E +++ D +R RGFGF+TF D SVD+
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 74 VLGQPHHELDSKTIDPKVAFPR 95
+ H++ K ++ K A PR
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPR 191
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 167 bits (424), Expect = 6e-42
Identities = 98/234 (41%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM---------- 187
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
Query: 188 -FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
F RGR G + GY N YG G+ GY + Y
Sbjct: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYGGYGGYDYTGY 323
Score = 61.2 bits (147), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Query: 75 LGQPHHELDSKTIDPKVAFPR 95
+ + +H + + KVA +
Sbjct: 240 MEKKYHNVGLSKCEIKVAMSK 260
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 167 bits (424), Expect = 6e-42
Identities = 98/234 (41%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 139 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM---------- 187
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 195 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 254
Query: 188 -FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
F RGR G + GY N YG G+ GY + Y
Sbjct: 255 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYGGYGGYDYTGY 304
Score = 61.2 bits (147), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 161 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 220
Query: 75 LGQPHHELDSKTIDPKVAFPR 95
+ + +H + + KVA +
Sbjct: 221 MEKKYHNVGLSKCEIKVAMSK 241
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 165 bits (417), Expect = 4e-41
Identities = 90/188 (47%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
Query: 191 GTRGRARG 198
G GRARG
Sbjct: 274 GFAGRARG 281
Score = 61.2 bits (147), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Query: 75 LGQPHHELDSKTIDPKVAFPR 95
+ + +H + + KVA +
Sbjct: 240 MEKKYHNVGLSKCEIKVAMSK 260
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 165 bits (417), Expect = 4e-41
Identities = 90/188 (47%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 139 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 194
Query: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 195 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 254
Query: 191 GTRGRARG 198
G GRARG
Sbjct: 255 GFAGRARG 262
Score = 61.2 bits (147), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 161 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 220
Query: 75 LGQPHHELDSKTIDPKVAFPR 95
+ + +H + + KVA +
Sbjct: 221 MEKKYHNVGLSKCEIKVAMSK 241
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 160 bits (405), Expect = 1e-39
Identities = 95/226 (42%), Positives = 133/226 (58%), Gaps = 9/226 (3%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ DSLR++F K+G + +C+VMRDP TKRSRGFGFVT++ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++D + ++PK A R +P KKIFVGG+ +T +++ YFE++GK+E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGT-RG 194
+M D+ + + RGF FVTF++ D V+K+ +H IN E KKA K+ M G+ RG
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRG 215
Query: 195 RARGLPYTMDA---FMLGMGMLGY-PNFVAT--YGRGYPGFAPSYG 234
R G M F G G G NF YG G G SYG
Sbjct: 216 RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Score = 70.1 bits (170), Expect = 2e-12
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGLS T + ++++FE++G + D ++M D T R RGFGFVT+ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H+++ ++VE K+A +E PG
Sbjct: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 120
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 158 bits (400), Expect = 4e-39
Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 7/219 (3%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+ A VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H +D + ++PK A R +P KK+FVGG+ +T ++ YFE++GK++
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
++ D+ + + RGFGFVTF++ D V+K+ +H IN E +KA ++ M +
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 196 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 234
RG F G G NF G + G + YG
Sbjct: 202 GRG-----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYG 235
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
+K+F+GGLS T E ++ Y+EQ+GK+ D ++M D + R RGFGFVTF + V+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 IHFHEINNKMVECKKAQPKEVMFPPG 191
H I+ ++VE K+A +E PG
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPG 106
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 158 bits (400), Expect = 4e-39
Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 7/219 (3%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+ A VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H +D + ++PK A R +P KK+FVGG+ +T ++ YFE++GK++
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
++ D+ + + RGFGFVTF++ D V+K+ +H IN E +KA ++ M +
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 196 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 234
RG F G G NF G + G + YG
Sbjct: 190 GRG-----GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYG 223
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
+K+F+GGLS T E ++ Y+EQ+GK+ D ++M D + R RGFGFVTF + V+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 IHFHEINNKMVECKKAQPKEVMFPPG 191
H I+ ++VE K+A +E PG
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPG 94
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 156 bits (394), Expect = 2e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + RGF FVTF++ D V+K+ +H + E +KA PK+ M + R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 196 AR 197
R
Sbjct: 195 GR 196
Score = 74.7 bits (182), Expect = 7e-14
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 95 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154
+ A PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 155 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
+ V+ H+++ ++VE K+A +E PG
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 156 bits (394), Expect = 2e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + RGF FVTF++ D V+K+ +H + E +KA PK+ M + R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 196 AR 197
R
Sbjct: 195 GR 196
Score = 74.7 bits (182), Expect = 7e-14
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 95 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154
+ A PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 155 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
+ V+ H+++ ++VE K+A +E PG
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 155 bits (391), Expect = 4e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + RGF FVTF++ D V+K+ +H +N E +KA K+ M + R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 196 AR 197
R
Sbjct: 195 GR 196
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+ +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H+++ ++VE K+A +E PG
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 155 bits (391), Expect = 4e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + RGF FVTF++ D V+K+ +H +N E +KA K+ M + R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 196 AR 197
R
Sbjct: 195 GR 196
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+ +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H+++ ++VE K+A +E PG
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 151 bits (381), Expect = 6e-37
Identities = 89/228 (39%), Positives = 122/228 (53%), Gaps = 11/228 (4%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGL+ QTS LR +F FG + +C+V+ +P TKRSR FGFVT+++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H +D T++ K A R A+P + KK+FVGGL + D+ ++F QFG VE A
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
++ DK + + RGFGFV F+N D +K + FH I VE KKA PKE ++ G G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 196 A---------RGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 234
+ RG D L G G N YG G G +YG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYG 235
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 1e-33
Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGL ++TS +SLR + ++G + EC+VMRDP T RSRGFGFV + VD +
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++ + ++PK A R +P KKIFVGG+ +T ++ Y+EQ+GK E
Sbjct: 75 RPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + R F FVTF+N D +K+ +H +N E +KA K+ M + R
Sbjct: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194
Query: 196 AR 197
+R
Sbjct: 195 SR 196
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGL T E ++ + EQ+G + + ++M D TNR RGFGFV + +
Sbjct: 7 PKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVE 66
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H++ ++VE K A +E PG
Sbjct: 67 EVDAAMNARPHKMGGRVVEPKTAVSREDSQRPG 99
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 1e-33
Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGL ++TS +SLR + ++G + EC+VMRDP T RSRGFGFV + VD +
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++ + ++PK A R +P KKIFVGG+ +T ++ Y+EQ+GK E
Sbjct: 75 RPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + R F FVTF+N D +K+ +H +N E +KA K+ M + R
Sbjct: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194
Query: 196 AR 197
+R
Sbjct: 195 SR 196
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGL T E ++ + EQ+G + + ++M D TNR RGFGFV + +
Sbjct: 7 PKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVE 66
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H++ ++VE K A +E PG
Sbjct: 67 EVDAAMNARPHKMGGRVVEPKTAVSREDSQRPG 99
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 140 bits (352), Expect = 1e-33
Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
K+FIGGL ++TS +SLR + ++G + EC+VMRDP T RSRGFGFV + VD +
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
H++ + ++PK A R +P KKIFVGG+ +T ++ Y+EQ+GK E
Sbjct: 75 RPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
+M D+ + + R F FVTF+N D +K+ +H +N E +KA K+ M + R
Sbjct: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194
Query: 196 AR 197
+R
Sbjct: 195 SR 196
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
PK + +K+F+GGL T E ++ + EQ+G + + ++M D TNR RGFGFV + +
Sbjct: 7 PKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVE 66
Query: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
V+ H++ ++VE K A +E PG
Sbjct: 67 EVDAAMNARPHKMGGRVVEPKTAVSREDSQRPG 99
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 92.0 bits (227), Expect = 4e-19
Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
+S + + GL W+T+ L++YFS FGE+ V +D T S+GFGFV F + + KV+
Sbjct: 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
Query: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Q H +D + D K+ +++Q + + R++K+FVG + + ++++++F Q+G V D
Sbjct: 163 SQ-RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDV 220
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVC 164
+ R F FVTF ++ + + +C
Sbjct: 221 FI-----PKPFRAFAFVTFADDQIAQSLC 244
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 100 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 159
+ V +T + V GL T +D+K+YF FG+V + D T +GFGFV F +
Sbjct: 98 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 157
Query: 160 VEKVCEIHFHEINNKMVECKKAQPKEVMFPP 190
KV H I+ + +CK K+ P
Sbjct: 158 QVKVMS-QRHMIDGRWCDCKLPNSKQSQDEP 187
Score = 41.6 bits (96), Expect = 7e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
S K+F+G + + D LR++FS++G++ + + K R F FVTFAD +
Sbjct: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFADDQIAQSLC 244
Query: 76 GQ 77
G+
Sbjct: 245 GE 246
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 79.0 bits (193), Expect = 4e-15
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV------- 71
+F L+ + P L ++FS G++R+ ++ D ++RS+G +V F D +SV
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 72 -DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 130
+VLG P S+ + A K +++VG L N + ++ FE FG
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG 274
Query: 131 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
++E LM D T R +G+GF+TF + + +K E
Sbjct: 275 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Score = 52.4 bits (124), Expect = 4e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
++++G L + + D LR F FG I +M D T RS+G+GF+TF+D K L Q
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 34.7 bits (78), Expect = 0.081
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154
+ +F L+A D++++F GKV D ++ D+ + R +G +V F
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 79.0 bits (193), Expect = 4e-15
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV------- 71
+F L+ + P L ++FS G++R+ ++ D ++RS+G +V F D +SV
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 72 -DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 130
+VLG P S+ + A K +++VG L N + ++ FE FG
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG 274
Query: 131 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
++E LM D T R +G+GF+TF + + +K E
Sbjct: 275 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Score = 52.4 bits (124), Expect = 4e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
++++G L + + D LR F FG I +M D T RS+G+GF+TF+D K L Q
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Score = 34.7 bits (78), Expect = 0.081
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 154
+ +F L+A D++++F GKV D ++ D+ + R +G +V F
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 77.0 bits (188), Expect = 1e-14
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
+ + + L + D + F G+I C ++RD T +S G+GFV ++DP DK +
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 77 QPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
+ +L +KTI A P A R ++V GL ++++Q F Q+G++ +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEK 162
++ D+ T RG GF+ F+ E+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEE 181
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 108 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
IFV LS + Q F FG V + ++ D TTN+ +GFGFVT N D
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 67
+F+ LS + L F FG + V+RD TT + +GFGFVT +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 77.0 bits (188), Expect = 1e-14
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
+ + + L + D + F G+I C ++RD T +S G+GFV ++DP DK +
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 77 QPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
+ +L +KTI A P A R ++V GL ++++Q F Q+G++ +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEK 162
++ D+ T RG GF+ F+ E+
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEE 181
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 108 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
IFV LS + Q F FG V + ++ D TTN+ +GFGFVT N D
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 67
+F+ LS + L F FG + V+RD TT + +GFGFVT +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 327
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 76.6 bits (187), Expect = 2e-14
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
+ + + L + + L+ F GEI C ++RD T +S G+GFV + DP +K +
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 77 QPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
+ L +KTI A P A R ++V GL ++++Q F Q+G++ +
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEK 162
++ D+ T RG GF+ F+ E+
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEE 181
Score = 36.6 bits (83), Expect = 0.021
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 108 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
IFV L+ + + Q F FG V + ++ D TN+ +GFGFVT N D
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
Score = 33.5 bits (75), Expect = 0.18
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 67
+F+ L+ L F FG + V+RD T + +GFGFVT +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 76.3 bits (186), Expect = 2e-14
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
+ + + L + + R F GEI C ++RD T +S G+GFV + DP +K +
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 77 QPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
+ L +KTI A P A R ++V GL ++++Q F Q+G++ +
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 136 MLMFDKTTNRHRGFGFVTFENEDVVEK 162
++ D+ T RG GF+ F+ E+
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEE 188
Score = 38.5 bits (88), Expect = 0.006
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 108 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
IFV LS ++ + Q F FG V + ++ D TN+ +GFGFVT N D
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349
Score = 35.4 bits (80), Expect = 0.047
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 67
+F+ LS + L F FG + V+RD T + +GFGFVT +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,088,286
Number of Sequences: 37866
Number of extensions: 463573
Number of successful extensions: 1740
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 610
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.