Guide to the Human Genome
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Name: CABYR Sequence: fasta or formatted (475aa) NCBI GI: 24797114
Description:

calcium-binding tyrosine phosphorylation-regulated protein isoform b

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [493aa] calcium-binding tyrosine phosphorylation-regulated protein isoform a
alt prot [281aa] calcium-binding tyrosine phosphorylation-regulated protein isoform d
alt prot [379aa] calcium-binding tyrosine phosphorylation-regulated protein isoform c
alt prot [379aa] calcium-binding tyrosine phosphorylation-regulated protein isoform c
alt prot [221aa] calcium-binding tyrosine phosphorylation-regulated protein isoform e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         38           3
 C cysteine            0.6          3           1
 D aspartate           3.8         18           1
 E glutamate          11.6         55           2
 F phenylalanine       1.3          6           1
 G glycine             4.8         23           2
 H histidine           1.1          5           1
 I isoleucine          3.2         15           1
 K lysine              6.3         30           2
 L leucine             6.3         30           2
 M methionine          2.3         11           1
 N asparagine          2.5         12           1
 P proline             8.8         42           3
 Q glutamine           5.5         26           1
 R arginine            1.1          5           1
 S serine             11.8         56           3
 T threonine           7.6         36           3
 V valine             10.9         52           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium-binding tyrosine phosphorylation-regulated p... 
CABYR                 0.987   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.326   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.324   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.324   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.161   calcium-binding tyrosine phosphorylation-regulated p...
MUC17                 0.038   mucin 17 
RP1L1                 0.026   retinitis pigmentosa 1-like 1 
MAP1B                 0.020   microtubule-associated protein 1B 
SPA17                 0.019   sperm autoantigenic protein 17 
EIF4G3                0.019   eukaryotic translation initiation factor 4 gamma, 3 ...
C11orf30              0.017   EMSY protein 
DIDO1                 0.017   death inducer-obliterator 1 isoform c 
TTN                   0.016   titin isoform N2-A 
PRG4                  0.016   proteoglycan 4 isoform D 
PRG4                  0.016   proteoglycan 4 isoform C 
PRG4                  0.016   proteoglycan 4 isoform B 
PRG4                  0.016   proteoglycan 4 isoform A 
MUC12                 0.016   PREDICTED: mucin 12 
TXNDC2                0.016   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.016   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.016   thioredoxin domain-containing 2 isoform 1 
RFX7                  0.016   regulatory factor X domain containing 2 
ARID1A                0.014   AT rich interactive domain 1A isoform a 
ARID1A                0.014   AT rich interactive domain 1A isoform b 
BRCA1                 0.014   breast cancer 1, early onset isoform 5 
BRCA1                 0.014   breast cancer 1, early onset isoform 4 
C11orf24              0.014   hypothetical protein LOC53838 
PLEKHA6               0.014   phosphoinositol 3-phosphate-binding protein-3 
NOLC1                 0.013   nucleolar and coiled-body phosphoprotein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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