BRCA1 16093

Name: BRCA1	Sequence: fasta or formatted (699aa)		NCBI GI: 237681125
Description: breast cancer 1, early onset isoform 5		Referenced in: DNases, Recombination, and DNA Repair Mammary Tissues Ring Finger Proteins
Other entries for this name: alt prot [1884aa] breast cancer 1, early onset isoform 2 alt prot [1816aa] breast cancer 1, early onset isoform 3 alt prot [759aa] breast cancer 1, early onset isoform 4 alt prot [1863aa] breast cancer 1, early onset isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 37 3 C cysteine 3.1 22 2 D aspartate 5.0 35 2 E glutamate 10.0 70 2 F phenylalanine 2.3 16 1 G glycine 4.4 31 2 H histidine 2.1 15 2 I isoleucine 4.0 28 2 K lysine 6.0 42 2 L leucine 8.6 60 2 M methionine 2.0 14 1 N asparagine 4.7 33 2 P proline 5.3 37 2 Q glutamine 5.9 41 2 R arginine 4.9 34 1 S serine 11.3 79 2 T threonine 6.4 45 2 V valine 5.4 38 2 W tryptophan 0.7 5 1 Y tyrosine 2.4 17 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 breast cancer 1, early onset isoform 5 BRCA1 0.953 breast cancer 1, early onset isoform 4 BRCA1 0.581 breast cancer 1, early onset isoform 3 BRCA1 0.581 breast cancer 1, early onset isoform 1 BRCA1 0.576 breast cancer 1, early onset isoform 2 TRIM31 0.029 tripartite motif protein 31 HLTF 0.025 helicase-like transcription factor HLTF 0.025 helicase-like transcription factor TRIM22 0.024 tripartite motif-containing 22 TRIM5 0.023 tripartite motif protein TRIM5 isoform alpha TRIM5 0.022 tripartite motif protein TRIM5 isoform delta TRIM5 0.022 tripartite motif protein TRIM5 isoform gamma TRIM50 0.022 tripartite motif protein 50A TRIM34 0.021 tripartite motif protein 34 isoform 3 TRIM34 0.021 tripartite motif protein 34 isoform 1 TRIM34 0.021 tripartite motif protein 34 isoform 1 TRIM4 0.021 tripartite motif protein TRIM4 isoform alpha TRIM4 0.021 tripartite motif protein TRIM4 isoform beta TRIM6-TRIM34 0.021 tripartite motif-containing 6 and tripartite motif-c... TRIM11 0.021 tripartite motif-containing 11 TRIM21 0.021 tripartite motif protein 21 TRIM39 0.021 tripartite motif-containing 39 isoform 2 TRIM39 0.021 tripartite motif-containing 39 isoform 1 TRIM26 0.021 tripartite motif-containing 26 RNF2 0.021 ring finger protein 2 LONRF1 0.021 LON peptidase N-terminal domain and ring finger 1 [H... TRIM6 0.020 tripartite motif-containing 6 isoform 2 TRIM6 0.020 tripartite motif-containing 6 isoform 1 TRIM68 0.020 ring finger protein 137 RNF138 0.020 ring finger protein 138 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.