Guide to the Human Genome
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Name: CABYR Sequence: fasta or formatted (221aa) NCBI GI: 24797118
Description:

calcium-binding tyrosine phosphorylation-regulated protein isoform e

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [493aa] calcium-binding tyrosine phosphorylation-regulated protein isoform a
alt prot [281aa] calcium-binding tyrosine phosphorylation-regulated protein isoform d
alt prot [379aa] calcium-binding tyrosine phosphorylation-regulated protein isoform c
alt prot [475aa] calcium-binding tyrosine phosphorylation-regulated protein isoform b
alt prot [379aa] calcium-binding tyrosine phosphorylation-regulated protein isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         18           3
 C cysteine            0.9          2           1
 D aspartate           4.1          9           1
 E glutamate           7.7         17           1
 F phenylalanine       2.7          6           1
 G glycine             5.9         13           2
 H histidine           0.9          2           1
 I isoleucine          2.7          6           1
 K lysine              9.5         21           2
 L leucine             5.4         12           2
 M methionine          2.3          5           1
 N asparagine          2.7          6           1
 P proline             8.6         19           3
 Q glutamine           4.5         10           1
 R arginine            2.7          6           2
 S serine              8.6         19           2
 T threonine          11.8         26           3
 V valine              7.2         16           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium-binding tyrosine phosphorylation-regulated p... 
CABYR                 0.811   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.806   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.806   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.699   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.344   calcium-binding tyrosine phosphorylation-regulated p...
SPA17                 0.050   sperm autoantigenic protein 17 
MUC17                 0.045   mucin 17 
PRG4                  0.033   proteoglycan 4 isoform D 
PRG4                  0.033   proteoglycan 4 isoform C 
PRG4                  0.033   proteoglycan 4 isoform B 
PRG4                  0.033   proteoglycan 4 isoform A 
LOC100292339          0.031   PREDICTED: hypothetical protein 
LOC100288937          0.031   PREDICTED: hypothetical protein XP_002343343 
PLEKHA6               0.031   phosphoinositol 3-phosphate-binding protein-3 
LOC100133714          0.029   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.024   PREDICTED: mucin 12 
MUC12                 0.024   PREDICTED: mucin 12 
MUC12                 0.024   PREDICTED: mucin 12, cell surface associated 
ZAN                   0.024   zonadhesin isoform 3 
ZAN                   0.024   zonadhesin isoform 6 
DAB1                  0.024   disabled homolog 1 
MUC2                  0.022   mucin 2 precursor 
PRAM1                 0.022   PML-RARA regulated adaptor molecule 1 
TNRC18                0.019   trinucleotide repeat containing 18 
MAST1                 0.019   microtubule associated serine/threonine kinase 1 [Ho...
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
CHCHD10               0.019   coiled-coil-helix-coiled-coil-helix domain containin...
FARP2                 0.019   FERM, RhoGEF and pleckstrin domain protein 2 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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