Guide to the Human Genome
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Name: SPA17 Sequence: fasta or formatted (151aa) NCBI GI: 8394343
Description:

sperm autoantigenic protein 17

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         12           3
 C cysteine            0.0          0           0
 D aspartate           4.0          6           1
 E glutamate          18.5         28           3
 F phenylalanine       5.3          8           1
 G glycine             4.0          6           1
 H histidine           2.0          3           1
 I isoleucine          5.3          8           1
 K lysine              9.3         14           2
 L leucine             5.3          8           2
 M methionine          1.3          2           1
 N asparagine          6.0          9           2
 P proline             5.3          8           2
 Q glutamine           4.6          7           1
 R arginine            4.6          7           1
 S serine              7.3         11           2
 T threonine           4.0          6           1
 V valine              2.6          4           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm autoantigenic protein 17 
PRKAR2A               0.075   cAMP-dependent protein kinase, regulatory subunit alp...
CABYR                 0.075   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.075   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.075   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.075   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.061   calcium-binding tyrosine phosphorylation-regulated p...
OFD1                  0.061   oral-facial-digital syndrome 1 
GAP43                 0.057   growth associated protein 43 isoform 1 
GAP43                 0.057   growth associated protein 43 isoform 2 
ABCF1                 0.054   ATP-binding cassette, sub-family F, member 1 isoform...
WDR87                 0.054   NYD-SP11 protein 
NEFM                  0.047   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.047   neurofilament, medium polypeptide 150kDa isoform 2 ...
NEFH                  0.043   neurofilament, heavy polypeptide 200kDa 
PRKAR2B               0.043   cAMP-dependent protein kinase, regulatory subunit be...
CALD1                 0.043   caldesmon 1 isoform 1 
MDN1                  0.043   MDN1, midasin homolog 
SCN8A                 0.039   sodium channel, voltage gated, type VIII, alpha [Homo...
ABCF1                 0.039   ATP-binding cassette, sub-family F, member 1 isoform...
MYT1                  0.036   myelin transcription factor 1 
IWS1                  0.036   IWS1 homolog 
NOP2                  0.036   nucleolar protein 1, 120kDa 
NOP2                  0.036   nucleolar protein 1, 120kDa 
UPF2                  0.036   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.036   UPF2 regulator of nonsense transcripts homolog [Homo...
PCDH15                0.036   protocadherin 15 isoform CD2-1 precursor 
BRD2                  0.036   bromodomain containing 2 
BRD2                  0.036   bromodomain containing 2 
ZEB1                  0.032   zinc finger E-box binding homeobox 1 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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