Guide to the Human Genome
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Name: FNDC5 Sequence: fasta or formatted (137aa) NCBI GI: 24371260
Description:

fibronectin type III domain containing 5

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          8           1
 C cysteine            1.5          2           1
 D aspartate           3.6          5           1
 E glutamate          10.2         14           2
 F phenylalanine       2.9          4           1
 G glycine             5.1          7           3
 H histidine           1.5          2           1
 I isoleucine          7.3         10           2
 K lysine              7.3         10           1
 L leucine             7.3         10           2
 M methionine          3.6          5           1
 N asparagine          5.1          7           3
 P proline             3.6          5           1
 Q glutamine           5.8          8           2
 R arginine            5.1          7           1
 S serine              6.6          9           1
 T threonine           7.3         10           3
 V valine              7.3         10           3
 W tryptophan          1.5          2           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 5 
FNDC4                 0.406   fibronectin type III domain containing 4 
PTPRS                 0.040   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.040   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.040   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.040   protein tyrosine phosphatase, receptor type, sigma ...
DCC                   0.036   deleted in colorectal carcinoma 
SDK1                  0.028   sidekick 1 
SDK2                  0.028   sidekick 2 
EPHA2                 0.028   ephrin receptor EphA2 
NEO1                  0.024   neogenin homolog 1 
PTPRQ                 0.024   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRF                 0.024   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.024   protein tyrosine phosphatase, receptor type, F isof...
FNDC3A                0.024   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.024   fibronectin type III domain containing 3A isoform 2...
IGDCC4                0.024   immunoglobulin superfamily, DCC subclass, member 4 [...
IGDCC3                0.024   putative neuronal cell adhesion molecule 
FNDC7                 0.020   fibronectin type III domain containing 7 
EPHB3                 0.020   ephrin receptor EphB3 precursor 
TTN                   0.016   titin isoform N2-A 
TTN                   0.016   titin isoform novex-2 
TTN                   0.016   titin isoform novex-1 
TTN                   0.016   titin isoform N2-B 
FNDC3B                0.016   fibronectin type III domain containing 3B 
FNDC3B                0.016   fibronectin type III domain containing 3B 
CMYA5                 0.016   cardiomyopathy associated 5 
CCDC105               0.016   coiled-coil domain containing 105 
LOC100131693          0.012   PREDICTED: similar to hCG1777996 
LOC100131693          0.012   PREDICTED: similar to hCG1777996 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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