Guide to the Human Genome
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Name: FNDC4 Sequence: fasta or formatted (234aa) NCBI GI: 12383064
Description:

fibronectin type III domain containing 4

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          9           2
 C cysteine            1.7          4           1
 D aspartate           5.6         13           1
 E glutamate           3.8          9           1
 F phenylalanine       1.3          3           1
 G glycine             9.4         22           1
 H histidine           1.3          3           1
 I isoleucine          5.6         13           2
 K lysine              3.0          7           2
 L leucine             8.1         19           3
 M methionine          1.3          3           1
 N asparagine          4.7         11           3
 P proline             9.4         22           2
 Q glutamine           4.3         10           2
 R arginine            7.3         17           1
 S serine             10.7         25           3
 T threonine           5.6         13           3
 V valine             10.3         24           3
 W tryptophan          1.3          3           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 4 
FNDC5                 0.224   fibronectin type III domain containing 5 
PTPRS                 0.051   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.051   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.051   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.051   protein tyrosine phosphatase, receptor type, sigma ...
EPHB4                 0.049   EPH receptor B4 precursor 
TTN                   0.044   titin isoform N2-A 
TTN                   0.044   titin isoform novex-2 
TTN                   0.044   titin isoform novex-1 
TTN                   0.044   titin isoform N2-B 
FN1                   0.040   fibronectin 1 isoform 5 preproprotein 
FN1                   0.040   fibronectin 1 isoform 6 preproprotein 
PTPRF                 0.040   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.040   protein tyrosine phosphatase, receptor type, F isof...
FN1                   0.038   fibronectin 1 isoform 3 preproprotein 
FN1                   0.038   fibronectin 1 isoform 1 preproprotein 
FN1                   0.038   fibronectin 1 isoform 4 preproprotein 
FN1                   0.038   fibronectin 1 isoform 2 preproprotein 
SDK1                  0.035   sidekick 1 
COL7A1                0.035   alpha 1 type VII collagen precursor 
PTPRD                 0.031   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.031   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.031   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.031   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.031   protein tyrosine phosphatase, receptor type, D isofo...
COL12A1               0.031   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.031   collagen, type XII, alpha 1 long isoform precursor [...
MYOM2                 0.031   myomesin 2 
TYRO3                 0.031   TYRO3 protein tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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