Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FNDC3A Sequence: fasta or formatted (1198aa) NCBI GI: 118918395
Description:

fibronectin type III domain containing 3A isoform 1

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [1142aa] fibronectin type III domain containing 3A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         60           2
 C cysteine            2.9         35           1
 D aspartate           4.3         52           2
 E glutamate           6.4         77           3
 F phenylalanine       3.0         36           2
 G glycine             7.6         91           2
 H histidine           1.8         21           1
 I isoleucine          5.8         69           2
 K lysine              6.3         75           2
 L leucine             6.6         79           2
 M methionine          1.9         23           2
 N asparagine          3.4         41           2
 P proline             8.8        106           4
 Q glutamine           4.8         57           2
 R arginine            3.8         46           2
 S serine              9.5        114           2
 T threonine           6.3         76           2
 V valine              6.4         77           4
 W tryptophan          1.1         13           1
 Y tyrosine            4.2         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 3A isoform 1... 
FNDC3A                0.955   fibronectin type III domain containing 3A isoform 2...
FNDC3B                0.481   fibronectin type III domain containing 3B 
FNDC3B                0.481   fibronectin type III domain containing 3B 
TTN                   0.060   titin isoform N2-A 
TTN                   0.060   titin isoform novex-2 
TTN                   0.060   titin isoform novex-1 
TTN                   0.060   titin isoform N2-B 
PTPRF                 0.049   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.048   protein tyrosine phosphatase, receptor type, F isof...
SDK1                  0.047   sidekick 1 
PTPRD                 0.045   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.044   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.044   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.041   protein tyrosine phosphatase, receptor type, sigma ...
USH2A                 0.040   usherin isoform B 
PTPRS                 0.040   protein tyrosine phosphatase, receptor type, sigma ...
SDK2                  0.038   sidekick 2 
IGDCC4                0.036   immunoglobulin superfamily, DCC subclass, member 4 [...
MYOM1                 0.035   myomesin 1 isoform b 
COL7A1                0.035   alpha 1 type VII collagen precursor 
NEO1                  0.035   neogenin homolog 1 
PTPRQ                 0.034   protein tyrosine phosphatase, receptor type, Q [Hom...
DSCAML1               0.034   Down syndrome cell adhesion molecule like 1 
FN1                   0.033   fibronectin 1 isoform 5 preproprotein 
FN1                   0.033   fibronectin 1 isoform 6 preproprotein 
PTPRD                 0.032   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.032   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.029   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.029   protein tyrosine phosphatase, receptor type, sigma ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press