Guide to the Human Genome
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Name: PTPRS Sequence: fasta or formatted (1948aa) NCBI GI: 104487006
Description:

protein tyrosine phosphatase, receptor type, sigma isoform 1 precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1501aa] protein tyrosine phosphatase, receptor type, sigma isoform 3 prec...
alt prot [1910aa] protein tyrosine phosphatase, receptor type, sigma isoform 2 prec...
alt prot [1505aa] protein tyrosine phosphatase, receptor type, sigma isoform 4 prec...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        136           3
 C cysteine            1.1         22           1
 D aspartate           4.6         89           2
 E glutamate           7.1        138           2
 F phenylalanine       3.4         66           1
 G glycine             7.1        138           2
 H histidine           1.8         35           2
 I isoleucine          4.7         91           2
 K lysine              4.1         79           2
 L leucine             7.2        141           2
 M methionine          2.3         45           2
 N asparagine          3.4         66           2
 P proline             8.3        161           4
 Q glutamine           4.8         93           2
 R arginine            6.6        128           2
 S serine              6.4        124           2
 T threonine           6.9        135           3
 V valine              8.3        162           3
 W tryptophan          1.4         27           1
 Y tyrosine            3.7         72           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, receptor type, sigma ... 
PTPRS                 0.971   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.715   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.709   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.707   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.643   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.639   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.476   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.476   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.376   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.373   protein tyrosine phosphatase, receptor type, D isofo...
PTPRA                 0.143   protein tyrosine phosphatase, receptor type, A isofor...
PTPRA                 0.143   protein tyrosine phosphatase, receptor type, A isofo...
PTPRA                 0.143   protein tyrosine phosphatase, receptor type, A isofo...
PTPRE                 0.133   protein tyrosine phosphatase, receptor type, E isofor...
PTPRE                 0.133   protein tyrosine phosphatase, receptor type, E isofo...
PTPRK                 0.125   protein tyrosine phosphatase, receptor type, K isofo...
PTPRK                 0.123   protein tyrosine phosphatase, receptor type, K isof...
PTPRM                 0.122   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.120   protein tyrosine phosphatase, receptor type, M isof...
PTPRT                 0.115   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.113   protein tyrosine phosphatase, receptor type, T isof...
PTPRU                 0.111   protein tyrosine phosphatase, receptor type, U isof...
PTPRG                 0.109   protein tyrosine phosphatase, receptor type, G prec...
PTPRU                 0.109   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.109   protein tyrosine phosphatase, receptor type, U isof...
PTPRZ1                0.098   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRC                 0.095   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.095   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.095   protein tyrosine phosphatase, receptor type, C isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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