Guide to the Human Genome
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Name: FNDC7 Sequence: fasta or formatted (733aa) NCBI GI: 222144290
Description:

fibronectin type III domain containing 7

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         62           2
 C cysteine            4.6         34           2
 D aspartate           3.7         27           2
 E glutamate           4.2         31           2
 F phenylalanine       2.9         21           1
 G glycine             7.0         51           2
 H histidine           1.1          8           1
 I isoleucine          5.6         41           1
 K lysine              3.5         26           2
 L leucine             6.8         50           2
 M methionine          1.6         12           1
 N asparagine          4.1         30           1
 P proline             4.8         35           2
 Q glutamine           2.9         21           1
 R arginine            3.0         22           1
 S serine             12.0         88           3
 T threonine          10.5         77           2
 V valine              7.6         56           2
 W tryptophan          1.5         11           1
 Y tyrosine            4.1         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 7 
FN1                   0.036   fibronectin 1 isoform 1 preproprotein 
FN1                   0.036   fibronectin 1 isoform 2 preproprotein 
FN1                   0.035   fibronectin 1 isoform 5 preproprotein 
FN1                   0.035   fibronectin 1 isoform 6 preproprotein 
COL7A1                0.032   alpha 1 type VII collagen precursor 
FN1                   0.032   fibronectin 1 isoform 3 preproprotein 
FN1                   0.032   fibronectin 1 isoform 4 preproprotein 
TNR                   0.027   tenascin R 
TNN                   0.027   tenascin N 
PTPRH                 0.027   protein tyrosine phosphatase, receptor type, H isof...
FNDC3B                0.025   fibronectin type III domain containing 3B 
FNDC3B                0.025   fibronectin type III domain containing 3B 
PTPRB                 0.023   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.023   protein tyrosine phosphatase, receptor type, B isof...
COL20A1               0.020   collagen, type XX, alpha 1 
PTPRQ                 0.020   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRF                 0.020   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.020   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.020   protein tyrosine phosphatase, receptor type, sigma ...
PTPRH                 0.019   protein tyrosine phosphatase, receptor type, H isof...
PTPRS                 0.018   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.018   protein tyrosine phosphatase, receptor type, sigma ...
PTPRJ                 0.017   protein tyrosine phosphatase, receptor type, J isof...
TTN                   0.017   titin isoform N2-A 
TTN                   0.017   titin isoform novex-2 
TTN                   0.017   titin isoform novex-1 
TTN                   0.017   titin isoform N2-B 
PTPRF                 0.016   protein tyrosine phosphatase, receptor type, F isof...
DSCAML1               0.016   Down syndrome cell adhesion molecule like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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