Guide to the Human Genome
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Name: FNDC3A Sequence: fasta or formatted (1142aa) NCBI GI: 118918397
Description:

fibronectin type III domain containing 3A isoform 2

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [1198aa] fibronectin type III domain containing 3A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         56           2
 C cysteine            3.0         34           1
 D aspartate           4.2         48           2
 E glutamate           6.5         74           3
 F phenylalanine       3.0         34           2
 G glycine             7.7         88           2
 H histidine           1.8         20           1
 I isoleucine          5.5         63           2
 K lysine              6.6         75           2
 L leucine             6.4         73           2
 M methionine          2.0         23           2
 N asparagine          3.5         40           2
 P proline             8.9        102           4
 Q glutamine           4.5         51           1
 R arginine            3.9         44           2
 S serine              9.6        110           2
 T threonine           6.2         71           2
 V valine              6.4         73           4
 W tryptophan          1.1         13           1
 Y tyrosine            4.4         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III domain containing 3A isoform 2... 
FNDC3A                0.999   fibronectin type III domain containing 3A isoform 1...
FNDC3B                0.482   fibronectin type III domain containing 3B 
FNDC3B                0.482   fibronectin type III domain containing 3B 
TTN                   0.063   titin isoform N2-A 
TTN                   0.063   titin isoform novex-2 
TTN                   0.063   titin isoform novex-1 
TTN                   0.063   titin isoform N2-B 
PTPRF                 0.051   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.050   protein tyrosine phosphatase, receptor type, F isof...
SDK1                  0.049   sidekick 1 
PTPRD                 0.047   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.046   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.046   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.043   protein tyrosine phosphatase, receptor type, sigma ...
USH2A                 0.042   usherin isoform B 
PTPRS                 0.042   protein tyrosine phosphatase, receptor type, sigma ...
SDK2                  0.040   sidekick 2 
IGDCC4                0.038   immunoglobulin superfamily, DCC subclass, member 4 [...
MYOM1                 0.037   myomesin 1 isoform b 
COL7A1                0.036   alpha 1 type VII collagen precursor 
NEO1                  0.036   neogenin homolog 1 
PTPRQ                 0.036   protein tyrosine phosphatase, receptor type, Q [Hom...
DSCAML1               0.035   Down syndrome cell adhesion molecule like 1 
FN1                   0.034   fibronectin 1 isoform 5 preproprotein 
FN1                   0.034   fibronectin 1 isoform 6 preproprotein 
PTPRD                 0.033   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.033   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.031   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.031   protein tyrosine phosphatase, receptor type, sigma ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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