Guide to the Human Genome
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Name: IGDCC3 Sequence: fasta or formatted (814aa) NCBI GI: 134244585
Description:

putative neuronal cell adhesion molecule

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         79           3
 C cysteine            2.0         16           1
 D aspartate           2.9         24           2
 E glutamate           6.0         49           2
 F phenylalanine       2.2         18           1
 G glycine             9.1         74           2
 H histidine           2.3         19           1
 I isoleucine          4.2         34           2
 K lysine              2.6         21           1
 L leucine            10.0         81           6
 M methionine          0.7          6           1
 N asparagine          2.8         23           3
 P proline             9.5         77           4
 Q glutamine           5.0         41           1
 R arginine            6.5         53           2
 S serine              7.7         63           3
 T threonine           6.3         51           2
 V valine              7.6         62           2
 W tryptophan          1.1          9           1
 Y tyrosine            1.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative neuronal cell adhesion molecule 
LOC343052             0.310   PREDICTED: similar to hCG1996527 
LOC343052             0.310   PREDICTED: similar to hCG1996527 
LOC343052             0.308   PREDICTED: similar to hCG1996527 
PRTG                  0.280   protogenin 
IGDCC4                0.230   immunoglobulin superfamily, DCC subclass, member 4 [...
DCC                   0.143   deleted in colorectal carcinoma 
NEO1                  0.134   neogenin homolog 1 
BOC                   0.095   brother of CDO 
CNTN3                 0.094   contactin 3 
HMCN2                 0.091   PREDICTED: hemicentin 2 
HMCN2                 0.091   PREDICTED: hemicentin 2 
HMCN2                 0.091   PREDICTED: hemicentin 2 
ROBO1                 0.089   roundabout 1 isoform b 
ROBO1                 0.089   roundabout 1 isoform a 
ROBO2                 0.088   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.088   roundabout, axon guidance receptor, homolog 2 isofor...
CNTN6                 0.086   contactin 6 
ROBO1                 0.085   roundabout 1 isoform d 
ROBO1                 0.085   roundabout 1 isoform c 
LOC642132             0.085   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.085   PREDICTED: similar to roundabout 1 isoform 2 
PTPRS                 0.085   protein tyrosine phosphatase, receptor type, sigma ...
SDK2                  0.084   sidekick 2 
L1CAM                 0.084   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.084   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.084   L1 cell adhesion molecule isoform 1 precursor 
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.082   protein tyrosine phosphatase, receptor type, D isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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