Guide to the Human Genome
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Name: RBBP8 Sequence: fasta or formatted (897aa) NCBI GI: 4506441
Description:

retinoblastoma binding protein 8 isoform a

Referenced in:

RB1 and Related Functions

Other entries for this name:
alt mRNA [897aa] retinoblastoma binding protein 8 isoform a
alt prot [867aa] retinoblastoma binding protein 8 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         33           2
 C cysteine            2.6         23           1
 D aspartate           5.7         51           2
 E glutamate          10.6         95           4
 F phenylalanine       3.3         30           2
 G glycine             4.3         39           2
 H histidine           2.8         25           2
 I isoleucine          4.0         36           3
 K lysine              9.4         84           3
 L leucine             8.1         73           2
 M methionine          1.8         16           1
 N asparagine          5.0         45           2
 P proline             5.2         47           2
 Q glutamine           6.2         56           2
 R arginine            5.0         45           2
 S serine             10.1         91           3
 T threonine           6.2         56           2
 V valine              3.9         35           2
 W tryptophan          0.3          3           1
 Y tyrosine            1.6         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma binding protein 8 isoform a 
RBBP8                 1.000   retinoblastoma binding protein 8 isoform a 
RBBP8                 0.867   retinoblastoma binding protein 8 isoform b 
C20orf151             0.063   hypothetical protein LOC140893 
CCDC136               0.016   coiled-coil domain containing 136 
MYH10                 0.016   myosin, heavy polypeptide 10, non-muscle 
AKAP9                 0.016   A-kinase anchor protein 9 isoform 2 
PLEC1                 0.016   plectin 1 isoform 11 
PLEC1                 0.016   plectin 1 isoform 10 
PLEC1                 0.016   plectin 1 isoform 8 
PLEC1                 0.016   plectin 1 isoform 7 
PLEC1                 0.016   plectin 1 isoform 6 
PLEC1                 0.016   plectin 1 isoform 3 
PLEC1                 0.016   plectin 1 isoform 2 
PLEC1                 0.016   plectin 1 isoform 1 
AKAP9                 0.013   A-kinase anchor protein 9 isoform 3 
CCDC88A               0.012   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.012   coiled-coil domain containing 88A isoform 1 
GOLGA6B               0.011   golgi autoantigen, golgin subfamily a, 6B 
EEA1                  0.011   early endosome antigen 1, 162kD 
FOXP2                 0.011   forkhead box P2 isoform II 
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GCC2                  0.011   GRIP and coiled-coil domain-containing 2 
C6orf174              0.011   hypothetical protein LOC387104 
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
GOLGA6D               0.011   golgi autoantigen, golgin subfamily a, 6D 
FOXP2                 0.011   forkhead box P2 isoform I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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