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Search of human proteins with 241896933
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|241896933 WD repeat domain 25 [Homo sapiens]
(544 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|241896935 WD repeat domain 25 [Homo sapiens] 1131 0.0
gi|241896933 WD repeat domain 25 [Homo sapiens] 1131 0.0
gi|7706657 cell division cycle 40 homolog [Homo sapiens] 149 8e-36
gi|16554629 WD repeat domain 5 [Homo sapiens] 109 6e-24
gi|16554627 WD repeat domain 5 [Homo sapiens] 109 6e-24
gi|23199987 WD repeat domain 5B [Homo sapiens] 94 2e-19
gi|153791298 mitogen-activated protein kinase organizer 1 [Homo ... 70 6e-12
gi|14150114 mitogen-activated protein kinase organizer 1 [Homo s... 70 6e-12
gi|113865883 WD repeat domain 38 [Homo sapiens] 69 8e-12
gi|32189425 WD repeat domain 69 [Homo sapiens] 69 1e-11
gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens] 68 2e-11
gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom... 64 4e-10
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 62 1e-09
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 62 1e-09
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 62 1e-09
gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo sapi... 60 4e-09
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 60 4e-09
gi|18874090 WD repeat domain 48 [Homo sapiens] 60 5e-09
gi|239787764 WD repeat domain 51A isoform 3 [Homo sapiens] 59 1e-08
gi|239787760 WD repeat domain 51A isoform 2 [Homo sapiens] 59 1e-08
gi|239787754 WD repeat domain 51A isoform 1 [Homo sapiens] 59 1e-08
gi|20357529 guanine nucleotide-binding protein, beta-2 subunit [... 59 1e-08
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 59 1e-08
gi|134133292 WD repeat domain 27 [Homo sapiens] 57 6e-08
gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens] 56 7e-08
gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens] 56 1e-07
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 56 1e-07
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 56 1e-07
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 56 1e-07
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 56 1e-07
>gi|241896935 WD repeat domain 25 [Homo sapiens]
Length = 544
Score = 1131 bits (2926), Expect = 0.0
Identities = 544/544 (100%), Positives = 544/544 (100%)
Query: 1 MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA 60
MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA
Sbjct: 1 MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA 60
Query: 61 GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS 120
GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS
Sbjct: 61 GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS 120
Query: 121 HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR 180
HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR
Sbjct: 121 HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR 180
Query: 181 LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF 240
LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF
Sbjct: 181 LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF 240
Query: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW
Sbjct: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
Query: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA
Sbjct: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN
Sbjct: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE
Sbjct: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM 540
CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM
Sbjct: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM 540
Query: 541 KIWH 544
KIWH
Sbjct: 541 KIWH 544
>gi|241896933 WD repeat domain 25 [Homo sapiens]
Length = 544
Score = 1131 bits (2926), Expect = 0.0
Identities = 544/544 (100%), Positives = 544/544 (100%)
Query: 1 MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA 60
MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA
Sbjct: 1 MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKA 60
Query: 61 GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS 120
GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS
Sbjct: 61 GAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTS 120
Query: 121 HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR 180
HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR
Sbjct: 121 HVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRR 180
Query: 181 LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF 240
LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF
Sbjct: 181 LRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLF 240
Query: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW
Sbjct: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
Query: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA
Sbjct: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN
Sbjct: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE
Sbjct: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM 540
CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM
Sbjct: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM 540
Query: 541 KIWH 544
KIWH
Sbjct: 541 KIWH 544
>gi|7706657 cell division cycle 40 homolog [Homo sapiens]
Length = 579
Score = 149 bits (375), Expect = 8e-36
Identities = 83/313 (26%), Positives = 159/313 (50%), Gaps = 13/313 (4%)
Query: 234 VPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTE 293
+P+K + GH V+ ++ P+ H+LLS SMD K+W CL+T+ H++
Sbjct: 276 LPKKQIHVWSGHTKGVSAVRLFPL--SGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSK 333
Query: 294 AVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRIT-TLKFHPKD--HNIFL 350
AVR + G + LS +D L L D ETG Q S ++ ++ +KF+P + N+F+
Sbjct: 334 AVRDICFNTAGTQFLSAAYDRYLKLWDTETG-QCISRFTNRKVPYCVKFNPDEDKQNLFV 392
Query: 351 CGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAW 410
G ++ WDIR+G++++ Y + I+F+ E F+S++D D+++ W
Sbjct: 393 AGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSD-------DKSLRVW 445
Query: 411 DFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGH 470
++ + P++ L P Q+ N + +F +R+++++ ++GH
Sbjct: 446 EWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGH 505
Query: 471 KVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSV 530
V GY+ + SP +++G +G++ ++ ++T + H + C+G +HP S
Sbjct: 506 MVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSK 565
Query: 531 LATCSWGGDMKIW 543
+ TC W G +K+W
Sbjct: 566 VITCGWDGLIKLW 578
>gi|16554629 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 109 bits (273), Expect = 6e-24
Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 24/310 (7%)
Query: 240 FHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAAR 299
F L GH V+++++ P L S+S DK K+W A D G +T S H +
Sbjct: 39 FTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 94
Query: 300 WAPCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNIFLCGGFSSE 357
W+ ++S D L + D+ +G L G S++ + F+P+ N+ + G F
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQS-NLIVSGSFDES 152
Query: 358 MKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAK 417
++ WD++TGK +++ A + F R+GS +SS S D WD +
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-------SYDGLCRIWDTASGQC 205
Query: 418 ISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSR-RRRYEGHKVEGYS 476
+ I + + P LA T N L L W Y + + Y GHK E Y
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL----WDYSKGKCLKTYTGHKNEKYC 261
Query: 477 VGCECS-PGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCS 535
+ S GG +V+GS D V +++ +T LQGHT + T HP +++A+ +
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAA 320
Query: 536 WGGD--MKIW 543
D +K+W
Sbjct: 321 LENDKTIKLW 330
>gi|16554627 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 109 bits (273), Expect = 6e-24
Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 24/310 (7%)
Query: 240 FHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAAR 299
F L GH V+++++ P L S+S DK K+W A D G +T S H +
Sbjct: 39 FTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 94
Query: 300 WAPCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNIFLCGGFSSE 357
W+ ++S D L + D+ +G L G S++ + F+P+ N+ + G F
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQS-NLIVSGSFDES 152
Query: 358 MKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAK 417
++ WD++TGK +++ A + F R+GS +SS S D WD +
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-------SYDGLCRIWDTASGQC 205
Query: 418 ISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSR-RRRYEGHKVEGYS 476
+ I + + P LA T N L L W Y + + Y GHK E Y
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL----WDYSKGKCLKTYTGHKNEKYC 261
Query: 477 VGCECS-PGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCS 535
+ S GG +V+GS D V +++ +T LQGHT + T HP +++A+ +
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAA 320
Query: 536 WGGD--MKIW 543
D +K+W
Sbjct: 321 LENDKTIKLW 330
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 94.4 bits (233), Expect = 2e-19
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 24/308 (7%)
Query: 242 LRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWA 301
L GH V+++++ P L S+S D+ +W A D + Y H + W+
Sbjct: 37 LVGHTEAVSSVKFSP---NGEWLASSSADRLIIIWGAYDGKYEKTLYG-HNLEISDVAWS 92
Query: 302 PCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNIFLCGGFSSEMK 359
R++S D L L D+ +G L G S++ + F+P N+ + G F +K
Sbjct: 93 SDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNY-VFCCNFNPPS-NLIISGSFDETVK 150
Query: 360 AWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKIS 419
W+++TGK +++ A + F GS +S S D WD + +
Sbjct: 151 IWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSG-------SYDGLCRIWDAASGQCLK 203
Query: 420 NQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSR-RRRYEGHKVEGYSVG 478
+ + + P L T N L L W Y R + Y GHK E Y +
Sbjct: 204 TLVDDDNPPVSFVKFSPNGKYILTATLDNTLKL----WDYSRGRCLKTYTGHKNEKYCIF 259
Query: 479 CECS-PGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWG 537
S GG +V+GS D V +++ +T LQGHT + HP +++A+ +
Sbjct: 260 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPT-ENLIASAALE 318
Query: 538 GD--MKIW 543
D +K+W
Sbjct: 319 NDKTIKLW 326
>gi|153791298 mitogen-activated protein kinase organizer 1 [Homo
sapiens]
Length = 315
Score = 69.7 bits (169), Expect = 6e-12
Identities = 80/324 (24%), Positives = 132/324 (40%), Gaps = 47/324 (14%)
Query: 234 VPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTE 293
+P+K L L +G V +++ + L+ DKT K+WN + G L+TYS H
Sbjct: 13 LPQKRLKTLDCGQGAVRAVRFNV---DGNYCLTCGSDKTLKLWNPL-RGTLLRTYSGHGY 68
Query: 294 AVRAARWAPCGRRILSGGFDFALHLTDLETG--TQLFSGRSDFRITTLKFHPKDHNIFLC 351
V A + + SGG D A+ L D+ +G + F G + ++ T++F+ ++ + L
Sbjct: 69 EVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAG-KVNTVQFN-EEATVILS 126
Query: 352 GGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRD----SADRTI 407
G S ++ WD RS + QTLD E + +SS S + S D +
Sbjct: 127 GSIDSSIRCWD------CRSRRPEPVQTLD-----EARDGVSSVKVSDHEILAGSVDGRV 175
Query: 408 IAWDFRTSAKISNQI--------FHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPY 459
+D R S+ + F C ++ L + G L
Sbjct: 176 RRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLG-------- 227
Query: 460 RMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACV 519
Y+GHK + Y + C S +V+ S DG+V + + A L +
Sbjct: 228 ------EYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQ 281
Query: 520 GTTYHPVLPSVLATCSWGGDMKIW 543
YHP P +L + GG ++ W
Sbjct: 282 SLAYHPTEPCLLT--AMGGSVQCW 303
>gi|14150114 mitogen-activated protein kinase organizer 1 [Homo
sapiens]
Length = 315
Score = 69.7 bits (169), Expect = 6e-12
Identities = 80/324 (24%), Positives = 132/324 (40%), Gaps = 47/324 (14%)
Query: 234 VPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTE 293
+P+K L L +G V +++ + L+ DKT K+WN + G L+TYS H
Sbjct: 13 LPQKRLKTLDCGQGAVRAVRFNV---DGNYCLTCGSDKTLKLWNPL-RGTLLRTYSGHGY 68
Query: 294 AVRAARWAPCGRRILSGGFDFALHLTDLETG--TQLFSGRSDFRITTLKFHPKDHNIFLC 351
V A + + SGG D A+ L D+ +G + F G + ++ T++F+ ++ + L
Sbjct: 69 EVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAG-KVNTVQFN-EEATVILS 126
Query: 352 GGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRD----SADRTI 407
G S ++ WD RS + QTLD E + +SS S + S D +
Sbjct: 127 GSIDSSIRCWD------CRSRRPEPVQTLD-----EARDGVSSVKVSDHEILAGSVDGRV 175
Query: 408 IAWDFRTSAKISNQI--------FHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPY 459
+D R S+ + F C ++ L + G L
Sbjct: 176 RRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLG-------- 227
Query: 460 RMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACV 519
Y+GHK + Y + C S +V+ S DG+V + + A L +
Sbjct: 228 ------EYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQ 281
Query: 520 GTTYHPVLPSVLATCSWGGDMKIW 543
YHP P +L + GG ++ W
Sbjct: 282 SLAYHPTEPCLLT--AMGGSVQCW 303
>gi|113865883 WD repeat domain 38 [Homo sapiens]
Length = 314
Score = 69.3 bits (168), Expect = 8e-12
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 21/261 (8%)
Query: 237 KVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVR 296
++L+ L GH GPV ++ P H+ S S D T ++W+ V CL+ H +V
Sbjct: 54 QLLWRLGGHTGPVKFCRFSP---DGHLFASASCDCTVRLWD-VARAKCLRVLKGHQRSVE 109
Query: 297 AARWAPCGRRILSGGFDFALHLTDLETG--TQLFSGRSDFRITTLKFHPKDHNIFLCGGF 354
++P R++ SGG+D + L D+++G +L G D I + F P N G +
Sbjct: 110 TVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRD-SIQSSDFSP-TVNCLATGSW 167
Query: 355 SSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRT 414
S + WD+R S++A + +I L S++ S D+TI W T
Sbjct: 168 DSTVHIWDLRMVTPAVSHQALEGHSANISCL-----CYSASGLLASGSWDKTIHIWKPTT 222
Query: 415 SAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSR-RRRYEGHKVE 473
S+ + H + S+A P E ++LA + + VW + +G V
Sbjct: 223 SSLLIQLKGHVTWV-KSIAFSPDE-LWLASAGYSRMV---KVWDCNTGKCLETLKG--VL 275
Query: 474 GYSVGCECSPGGDLLVTGSAD 494
+ C +P G +LV+G+AD
Sbjct: 276 DVAHTCAFTPDGKILVSGAAD 296
Score = 58.9 bits (141), Expect = 1e-08
Identities = 73/323 (22%), Positives = 119/323 (36%), Gaps = 67/323 (20%)
Query: 225 LNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHC 284
+NS T R+V F + H G VN+ + P MLL+ S D W SG
Sbjct: 1 MNSGVPATLAVRRVKFFGQ-HGGEVNSSAFSP---DGQMLLTGSEDGCVYGWET-RSGQL 55
Query: 285 LQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFR-ITTLKFHP 343
L HT V+ R++P G S D + L D+ L + R + T+ F P
Sbjct: 56 LWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSP 115
Query: 344 KDHNIFLCGGFSSEMKAWDIRTGKVMR---SYKATIQQTLDILFLREGSEFLSSTDASTR 400
D GG+ + WD+++G+++R ++ +IQ S+F + +
Sbjct: 116 -DSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS----------SDFSPTVNCLAT 164
Query: 401 DSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYR 460
S D T+ WD R ++ + H+
Sbjct: 165 GSWDSTVHIWDLRM---VTPAVSHQAL--------------------------------- 188
Query: 461 MSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVG 520
EGH ++ C C LL +GS D + ++ T+S L+GH
Sbjct: 189 -------EGHSA---NISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKS 238
Query: 521 TTYHPVLPSVLATCSWGGDMKIW 543
+ P LA+ + +K+W
Sbjct: 239 IAFSPD-ELWLASAGYSRMVKVW 260
Score = 50.8 bits (120), Expect = 3e-06
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 48/214 (22%)
Query: 237 KVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVR 296
K L L+GH+ V T+ + P S L S DK +W+ V SG L+ H ++++
Sbjct: 96 KCLRVLKGHQRSVETVSFSP---DSRQLASGGWDKRVMLWD-VQSGQMLRLLVGHRDSIQ 151
Query: 297 AARWAPCGRRILSGGFDFALHLTDLETGTQ------------------------LFSGRS 332
++ ++P + +G +D +H+ DL T L SG
Sbjct: 152 SSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSW 211
Query: 333 DFRI-------TTLKFHPKDHNIFL-------------CGGFSSEMKAWDIRTGKVMRSY 372
D I ++L K H ++ G+S +K WD TGK + +
Sbjct: 212 DKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETL 271
Query: 373 KATIQQTLDILFLREGSEFLSSTDASTRDSADRT 406
K + F +G +S TR RT
Sbjct: 272 KGVLDVAHTCAFTPDGKILVSGAADQTRRQISRT 305
>gi|32189425 WD repeat domain 69 [Homo sapiens]
Length = 415
Score = 68.9 bits (167), Expect = 1e-11
Identities = 70/303 (23%), Positives = 123/303 (40%), Gaps = 19/303 (6%)
Query: 242 LRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWA 301
L GHR V I + + + S DKT K+W+ V++G C T+ HT + +
Sbjct: 130 LEGHRNVVYAIAFNNPYGDK--IATGSFDKTCKLWS-VETGKCYHTFRGHTAEIVCLSFN 186
Query: 302 PCGRRILSGGFDFALHLTDLETGTQLFSGRS-DFRITTLKFHPKDHNIFLCGGFSSEMKA 360
P + +G D L D++ G ++++ R I +L F+ I + G F +
Sbjct: 187 PQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRI-ITGSFDHTVVV 245
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
WD TG+ + + F + S L+ S D+T WD ++
Sbjct: 246 WDADTGRKVNILIGHCAEISSASFNWDCSLILTG-------SMDKTCKLWDATNGKCVAT 298
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
H+ S + + + A +G +FS ++ + EGH EG
Sbjct: 299 LTGHDDEILDSCFDYTGKLIATASADGT-ARIFSAATRKCIA---KLEGH--EGEISKIS 352
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDM 540
+P G+ L+TGS+D ++ +T L+GHT ++ +++ T S
Sbjct: 353 FNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN-YKGNIVITGSKDNTC 411
Query: 541 KIW 543
+IW
Sbjct: 412 RIW 414
>gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
Length = 357
Score = 67.8 bits (164), Expect = 2e-11
Identities = 65/295 (22%), Positives = 116/295 (39%), Gaps = 53/295 (17%)
Query: 242 LRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWA 301
L+GH G V + + + ML S S DKT VW++ ++G ++ HT V + A
Sbjct: 105 LKGHSGAVMELHYN---TDGSMLFSASTDKTVAVWDS-ETGERVKRLKGHTSFVNSCYPA 160
Query: 302 PCGRRIL-SGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
G +++ +G D + L D+ + + ++ +++ + F+ I + GG +++K
Sbjct: 161 RRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQI-ISGGIDNDIKV 219
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
WD+R K+ + + + EGS LS+ + D T+ WD R A
Sbjct: 220 WDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSN-------AMDNTVRVWDVRPFA---- 268
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
P+E R + + H E + C
Sbjct: 269 ---------------PKE---------------------RCVKIFQGNVHNFEKNLLRCS 292
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCS 535
SP G + GSAD V ++ + L GH + +HP P +++ S
Sbjct: 293 WSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347
>gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Homo
sapiens]
Length = 504
Score = 63.9 bits (154), Expect = 4e-10
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 24/222 (10%)
Query: 237 KVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVR 296
++L L+GH V ++ + P ++ S S D T ++W+ V + C+Q H AV
Sbjct: 255 QILATLKGHTKKVTSVVFHP---SQDLVFSASPDATIRIWS-VPNASCVQVVRAHESAVT 310
Query: 297 AARWAPCGRRILSGGFDFALHLTDLETG---TQLFSGRSDFRITTLKFHPKDHNIFLCGG 353
G +LS D +D++TG T++ S +T +FHP D IF G
Sbjct: 311 GLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP-DGLIFGTGT 369
Query: 354 FSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFR 413
S++K WD++ + ++ I F G ++ D D ++ WD R
Sbjct: 370 MDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAAD-------DSSVKLWDLR 422
Query: 414 TSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFST 455
F SL + +G YLAL T
Sbjct: 423 KLKNFKTLQLDNNFEVKSL---------IFDQSGTYLALGGT 455
Score = 42.7 bits (99), Expect = 8e-04
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 14/209 (6%)
Query: 336 ITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSST 395
I L P D N L GG + +D + +++ + K ++ ++ F S
Sbjct: 224 ILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVV-------FHPSQ 276
Query: 396 DASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFST 455
D S D TI W ++ + HE L+LH L+ ++ Y A FS
Sbjct: 277 DLVFSASPDATIRIWSVPNASCVQVVRAHES-AVTGLSLHATGDYLLSSSDDQYWA-FSD 334
Query: 456 VWPYRMSRRRRYEGHKVEGYSVGC-ECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGH 514
+ R+ + E G S+ C + P G + TG+ D ++ ++ + + GH
Sbjct: 335 IQTGRVLTKVTDE---TSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGH 391
Query: 515 TQACVGTTYHPVLPSVLATCSWGGDMKIW 543
+ + LAT + +K+W
Sbjct: 392 SGPITSIAFSE-NGYYLATAADDSSVKLW 419
Score = 33.9 bits (76), Expect = 0.39
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 456 VWPYRMSRRRRYEGH------KVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRAC 509
V P +S+ R+ H + G C + ++TG AD V+++ +
Sbjct: 199 VKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILA 258
Query: 510 TLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543
TL+GHT+ +HP ++ + S ++IW
Sbjct: 259 TLKGHTKKVTSVVFHP-SQDLVFSASPDATIRIW 291
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 19/197 (9%)
Query: 232 TTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLH 291
+ V K L L GH G V + Q + ++++S S D+T KVWNA ++G C+ T H
Sbjct: 289 SAVTGKCLRTLVGHTGGVWSSQM-----RDNIIISGSTDRTLKVWNA-ETGECIHTLYGH 342
Query: 292 TEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLC 351
T VR +R++SG D L + D+ETG L + ++ D +
Sbjct: 343 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDGRRVVS 398
Query: 352 GGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
G + +K WD T + + + + + F +G +S S D +I WD
Sbjct: 399 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-------SLDTSIRVWD 449
Query: 412 FRTSAKISNQIFHERFT 428
T I H+ T
Sbjct: 450 VETGNCIHTLTGHQSLT 466
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 47/197 (23%)
Query: 264 LLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLET 323
++S S D T +VW+ +++G CL H AVR ++ GRR++SG +DF + + D ET
Sbjct: 356 VVSGSRDATLRVWD-IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPET 412
Query: 324 --------------------GTQLFSGRSDFRIT-----------TLKFHPK-------D 345
G + SG D I TL H
Sbjct: 413 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 472
Query: 346 HNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
NI + G S +K WDI+TG+ +++ + + + L+ F+ ++ S D
Sbjct: 473 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS------SDDG 526
Query: 406 TIIAWDFRTSAKISNQI 422
T+ WD +T I N +
Sbjct: 527 TVKLWDLKTGEFIRNLV 543
Score = 55.8 bits (133), Expect = 1e-07
Identities = 82/333 (24%), Positives = 132/333 (39%), Gaps = 51/333 (15%)
Query: 224 YLNSHYKETTVPRKVLFH---LRGHRGPVNT-IQWCPVLSKSHMLLSTSMDKTFKVWNAV 279
Y+ H +T R L L+GH V T +Q+C + ++S S D T KVW+AV
Sbjct: 237 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAV 291
Query: 280 DSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGT---QLFSGRSDFRI 336
+G CL+T HT V +++ I+SG D L + + ETG L+ S R
Sbjct: 292 -TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR- 347
Query: 337 TTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTD 396
+ H K + G + ++ WDI TG+ + + + + +G +S
Sbjct: 348 -CMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG-- 399
Query: 397 ASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFS-- 454
+ D + WD T TC V+ Q +G ++ S
Sbjct: 400 -----AYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLD 442
Query: 455 ---TVWPYRMSR-RRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACT 510
VW GH + + G E ++LV+G+AD V ++ +T T
Sbjct: 443 TSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 498
Query: 511 LQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543
LQG + T + + T S G +K+W
Sbjct: 499 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 531
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 19/197 (9%)
Query: 232 TTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLH 291
+ V K L L GH G V + Q + ++++S S D+T KVWNA ++G C+ T H
Sbjct: 407 SAVTGKCLRTLVGHTGGVWSSQM-----RDNIIISGSTDRTLKVWNA-ETGECIHTLYGH 460
Query: 292 TEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLC 351
T VR +R++SG D L + D+ETG L + ++ D +
Sbjct: 461 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDGRRVVS 516
Query: 352 GGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
G + +K WD T + + + + + F +G +S S D +I WD
Sbjct: 517 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-------SLDTSIRVWD 567
Query: 412 FRTSAKISNQIFHERFT 428
T I H+ T
Sbjct: 568 VETGNCIHTLTGHQSLT 584
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 47/197 (23%)
Query: 264 LLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLET 323
++S S D T +VW+ +++G CL H AVR ++ GRR++SG +DF + + D ET
Sbjct: 474 VVSGSRDATLRVWD-IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPET 530
Query: 324 --------------------GTQLFSGRSDFRIT-----------TLKFHPK-------D 345
G + SG D I TL H
Sbjct: 531 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 590
Query: 346 HNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
NI + G S +K WDI+TG+ +++ + + + L+ F+ ++ S D
Sbjct: 591 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS------SDDG 644
Query: 406 TIIAWDFRTSAKISNQI 422
T+ WD +T I N +
Sbjct: 645 TVKLWDLKTGEFIRNLV 661
Score = 55.8 bits (133), Expect = 1e-07
Identities = 82/333 (24%), Positives = 132/333 (39%), Gaps = 51/333 (15%)
Query: 224 YLNSHYKETTVPRKVLFH---LRGHRGPVNT-IQWCPVLSKSHMLLSTSMDKTFKVWNAV 279
Y+ H +T R L L+GH V T +Q+C + ++S S D T KVW+AV
Sbjct: 355 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAV 409
Query: 280 DSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGT---QLFSGRSDFRI 336
+G CL+T HT V +++ I+SG D L + + ETG L+ S R
Sbjct: 410 -TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR- 465
Query: 337 TTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTD 396
+ H K + G + ++ WDI TG+ + + + + +G +S
Sbjct: 466 -CMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG-- 517
Query: 397 ASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFS-- 454
+ D + WD T TC V+ Q +G ++ S
Sbjct: 518 -----AYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLD 560
Query: 455 ---TVWPYRMSR-RRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACT 510
VW GH + + G E ++LV+G+AD V ++ +T T
Sbjct: 561 TSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 616
Query: 511 LQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543
LQG + T + + T S G +K+W
Sbjct: 617 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 649
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 19/197 (9%)
Query: 232 TTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLH 291
+ V K L L GH G V + Q + ++++S S D+T KVWNA ++G C+ T H
Sbjct: 327 SAVTGKCLRTLVGHTGGVWSSQM-----RDNIIISGSTDRTLKVWNA-ETGECIHTLYGH 380
Query: 292 TEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLC 351
T VR +R++SG D L + D+ETG L + ++ D +
Sbjct: 381 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDGRRVVS 436
Query: 352 GGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
G + +K WD T + + + + + F +G +S S D +I WD
Sbjct: 437 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-------SLDTSIRVWD 487
Query: 412 FRTSAKISNQIFHERFT 428
T I H+ T
Sbjct: 488 VETGNCIHTLTGHQSLT 504
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 47/197 (23%)
Query: 264 LLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLET 323
++S S D T +VW+ +++G CL H AVR ++ GRR++SG +DF + + D ET
Sbjct: 394 VVSGSRDATLRVWD-IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPET 450
Query: 324 --------------------GTQLFSGRSDFRIT-----------TLKFHPK-------D 345
G + SG D I TL H
Sbjct: 451 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 510
Query: 346 HNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
NI + G S +K WDI+TG+ +++ + + + L+ F+ ++ S D
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS------SDDG 564
Query: 406 TIIAWDFRTSAKISNQI 422
T+ WD +T I N +
Sbjct: 565 TVKLWDLKTGEFIRNLV 581
Score = 55.8 bits (133), Expect = 1e-07
Identities = 82/333 (24%), Positives = 132/333 (39%), Gaps = 51/333 (15%)
Query: 224 YLNSHYKETTVPRKVLFH---LRGHRGPVNT-IQWCPVLSKSHMLLSTSMDKTFKVWNAV 279
Y+ H +T R L L+GH V T +Q+C + ++S S D T KVW+AV
Sbjct: 275 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAV 329
Query: 280 DSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGT---QLFSGRSDFRI 336
+G CL+T HT V +++ I+SG D L + + ETG L+ S R
Sbjct: 330 -TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR- 385
Query: 337 TTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTD 396
+ H K + G + ++ WDI TG+ + + + + +G +S
Sbjct: 386 -CMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG-- 437
Query: 397 ASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFS-- 454
+ D + WD T TC V+ Q +G ++ S
Sbjct: 438 -----AYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLD 480
Query: 455 ---TVWPYRMSR-RRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACT 510
VW GH + + G E ++LV+G+AD V ++ +T T
Sbjct: 481 TSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 536
Query: 511 LQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543
LQG + T + + T S G +K+W
Sbjct: 537 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 569
>gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo
sapiens]
Length = 522
Score = 60.5 bits (145), Expect = 4e-09
Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 33/275 (12%)
Query: 233 TVPRKVLFH-LRGHRGPVNTIQWCPVLS-----KSHMLLSTSMDKTFKVWNAVDSGHCLQ 286
+VP L H LRGH V I + P + K L S + D + K+W+ +DS +
Sbjct: 259 SVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWS-LDSDEPVA 317
Query: 287 TYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRS-DFRITTLKFHPKD 345
HT V W P GR + + +D + L DLE ++ + + FH +D
Sbjct: 318 DIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFH-QD 376
Query: 346 HNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
++ GG + + WD+RTG+ + + +++ I F G + S D
Sbjct: 377 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATG-------SGDN 429
Query: 406 TIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLAL-----FSTVWPY- 459
T WD R + H+ V +GN+L + +W +
Sbjct: 430 TCKVWDLRQRRCVYTIPAHQNLV---------TGVKFEPIHGNFLLTGAYDNTAKIWTHP 480
Query: 460 RMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSAD 494
S + GH EG +G + S G L+ T S D
Sbjct: 481 GWSPLKTLAGH--EGKVMGLDISSDGQLIATCSYD 513
Score = 58.9 bits (141), Expect = 1e-08
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 16/208 (7%)
Query: 337 TTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTD 396
+T+ PKD N+ C S +K W + + + + + + +++ G FL +T
Sbjct: 285 STVSLDPKDVNLASCAADGS-VKLWSLDSDEPVADIEGHTVRVARVMWHPSG-RFLGTT- 341
Query: 397 ASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTV 456
DR+ WD +I +Q H +A H + LA T G L F V
Sbjct: 342 -----CYDRSWRLWDLEAQEEILHQEGHSMGVY-DIAFH--QDGSLAGTGG--LDAFGRV 391
Query: 457 WPYRMSRRRRY-EGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHT 515
W R R + EGH E Y G SP G + TGS D ++ R T+ H
Sbjct: 392 WDLRTGRCIMFLEGHLKEIY--GINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQ 449
Query: 516 QACVGTTYHPVLPSVLATCSWGGDMKIW 543
G + P+ + L T ++ KIW
Sbjct: 450 NLVTGVKFEPIHGNFLLTGAYDNTAKIW 477
Score = 32.0 bits (71), Expect = 1.5
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 479 CECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSV-------L 531
C SP +L T G ++S + TL+GH +HP L
Sbjct: 237 CHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNL 296
Query: 532 ATCSWGGDMKIW 543
A+C+ G +K+W
Sbjct: 297 ASCAADGSVKLW 308
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 60.5 bits (145), Expect = 4e-09
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 242 LRGHRGPVNTIQWCPVLSKSH------MLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAV 295
L+ H + TI+W P ++ ML S S D T ++W+ VD G C+ T + H E V
Sbjct: 387 LQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWD-VDRGICIHTLTKHQEPV 445
Query: 296 RAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGR 331
+ ++P GR + SG FD +H+ + +TG + S R
Sbjct: 446 YSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYR 481
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
+GH VN I+W P ++L S S D T K+W+ + +C+ H + + +W+P
Sbjct: 346 QGHTNEVNAIKWDPT---GNLLASCSDDMTLKIWS-MKQDNCVHDLQAHNKEIYTIKWSP 401
Query: 303 CGR---------RILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLCG 352
G + S FD + L D++ G + + + + ++ F P D G
Sbjct: 402 TGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSP-DGRYLASG 460
Query: 353 GFSSEMKAWDIRTGKVMRSYKAT 375
F + W+ +TG ++ SY+ T
Sbjct: 461 SFDKCVHIWNTQTGALVHSYRGT 483
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 17/179 (9%)
Query: 231 ETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSG-------- 282
+ +P LRGH V W PV S +L S S D T ++WN ++
Sbjct: 154 DVEIPPNKAVVLRGHESEVFICAWNPV---SDLLASGSGDSTARIWNLSENSTSGSTQLV 210
Query: 283 --HCLQTYSLHTEA---VRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRIT 337
HC++ + V + W G + +G +D + + G+ I
Sbjct: 211 LRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIF 270
Query: 338 TLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTD 396
LK++ K N L G WD TG+ + + LD+ + + STD
Sbjct: 271 ALKWNKKG-NFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTD 328
Score = 42.0 bits (97), Expect = 0.001
Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 59/223 (26%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA-------------------------- 278
H+GP+ ++W K + +LS +DKT +W+A
Sbjct: 265 HKGPIFALKWN---KKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT 321
Query: 279 --------------VDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETG 324
+ ++T+ HT V A +W P G + S D L + ++
Sbjct: 322 FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQD 381
Query: 325 TQLFSGRS-DFRITTLKFHP-------KDHNIFLC-GGFSSEMKAWDIRTGKVMRSYKAT 375
+ ++ + I T+K+ P + N+ L F S ++ WD+ G + +
Sbjct: 382 NCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKH 441
Query: 376 IQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKI 418
+ + F +G +L+S S D+ + W+ +T A +
Sbjct: 442 QEPVYSVAFSPDG-RYLAS------GSFDKCVHIWNTQTGALV 477
>gi|18874090 WD repeat domain 48 [Homo sapiens]
Length = 677
Score = 60.1 bits (144), Expect = 5e-09
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCG 304
H VN I C L+S S D T KVWNA G C+ T H + V+A +A
Sbjct: 74 HTDWVNDIVLC---CNGKTLISASSDTTVKVWNA-HKGFCMSTLRTHKDYVKALAYAKDK 129
Query: 305 RRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDH----------NIFLCGGF 354
+ S G D + L D+ T T L + + ++L + KD I + G
Sbjct: 130 ELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGN-KDSIYSLAMNQLGTIIVSGST 188
Query: 355 SSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRT 414
++ WD RT + K +L R+G++ LS S+D TI W
Sbjct: 189 EKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSG-------SSDGTIRLWSLGQ 241
Query: 415 SAKISNQIFHE 425
I+ H+
Sbjct: 242 QRCIATYRVHD 252
Score = 37.7 bits (86), Expect = 0.027
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 239 LFHLRGHRGPVNTIQWCPVLSKSH-MLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRA 297
L L+GH V + +L++ LS S D T ++W+ + C+ TY +H E V A
Sbjct: 203 LMKLKGHTDNVKAL----LLNRDGTQCLSGSSDGTIRLWS-LGQQRCIATYRVHDEGVWA 257
Query: 298 ARWAPCGRRILSGGFDFALHLTDL 321
+ + SGG D ++ TDL
Sbjct: 258 LQVNDAFTHVYSGGRDRKIYCTDL 281
>gi|239787764 WD repeat domain 51A isoform 3 [Homo sapiens]
Length = 369
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
R H V ++ +C S ++ S DKT KVW A L + S H VR A+++P
Sbjct: 62 RAHTATVRSVHFC---SDGQSFVTASDDKTVKVW-ATHRQKFLFSLSQHINWVRCAKFSP 117
Query: 303 CGRRILSGGFDFALHLTDLETGTQLFS--GRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
GR I+S D + L D + + S F +T + FHP I G + +K
Sbjct: 118 DGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGF-VTYVDFHPSGTCI-AAAGMDNTVKV 175
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDAST 399
WD+RT ++++ Y+ + F G+ ++++ ST
Sbjct: 176 WDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 214
Score = 55.8 bits (133), Expect = 1e-07
Identities = 59/271 (21%), Positives = 103/271 (38%), Gaps = 27/271 (9%)
Query: 235 PRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEA 294
P+ + GH+ V + + P H+L S S DKT ++W G + HT
Sbjct: 12 PQSRAYRFTGHKDAVTCVNFSP---SGHLLASGSRDKTVRIWVPNVKGES-TVFRAHTAT 67
Query: 295 VRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFR-ITTLKFHPKDHNIFLCGG 353
VR+ + G+ ++ D + + LFS + KF P D + +
Sbjct: 68 VRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSP-DGRLIVSAS 126
Query: 354 FSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFR 413
+K WD + + + SY + + ++ +F S D T+ WD R
Sbjct: 127 DDKTVKLWDKSSRECVHSY---CEHGGFVTYV----DFHPSGTCIAAAGMDNTVKVWDVR 179
Query: 414 TSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYR----MSRRRRYEG 469
T + + H L+ HP +GNYL S+ + M R Y
Sbjct: 180 THRLLQHYQLHSA-AVNGLSFHP---------SGNYLITASSDSTLKILDLMEGRLLYTL 229
Query: 470 HKVEGYSVGCECSPGGDLLVTGSADGRVLMY 500
H +G + S G+ +G +D +V+++
Sbjct: 230 HGHQGPATTVAFSRTGEYFASGGSDEQVMVW 260
Score = 42.4 bits (98), Expect = 0.001
Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 14/246 (5%)
Query: 269 MDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLF 328
MD VW+ + ++ H +AV ++P G + SG D + + +
Sbjct: 1 MDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGEST 59
Query: 329 SGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREG 388
R+ D F+ +K W K + S I F +G
Sbjct: 60 VFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDG 119
Query: 389 SEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGN 448
+S++D D+T+ WD + + + H F + HP A N
Sbjct: 120 RLIVSASD-------DKTVKLWDKSSRECVHSYCEHGGFVT-YVDFHPSGTCIAAAGMDN 171
Query: 449 YLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRA 508
+ ++ V +R+ + + V G S P G+ L+T S+D + +
Sbjct: 172 TVKVWD-VRTHRLLQHYQLHSAAVNGLSF----HPSGNYLITASSDSTLKILDLMEGRLL 226
Query: 509 CTLQGH 514
TL GH
Sbjct: 227 YTLHGH 232
Score = 34.3 bits (77), Expect = 0.30
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 24/219 (10%)
Query: 328 FSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRT---GKVMRSYKATIQQTLDILF 384
F+G D +T + F P H + G ++ W V R++ AT++ + F
Sbjct: 19 FTGHKD-AVTCVNFSPSGH-LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRS---VHF 73
Query: 385 LREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFT-CPSLALHPREPVFLA 443
+G F++++D D+T+ W + + H + C + P + ++
Sbjct: 74 CSDGQSFVTASD-------DKTVKVWATHRQKFLFSLSQHINWVRCAKFS--PDGRLIVS 124
Query: 444 QTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFR 503
++ + L+ + SR + + G+ + P G + D V ++ R
Sbjct: 125 ASDDKTVKLWD-----KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVR 179
Query: 504 TASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKI 542
T Q H+ A G ++HP + L T S +KI
Sbjct: 180 THRLLQHYQLHSAAVNGLSFHP-SGNYLITASSDSTLKI 217
>gi|239787760 WD repeat domain 51A isoform 2 [Homo sapiens]
Length = 359
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
R H V ++ +C S ++ S DKT KVW A L + S H VR A+++P
Sbjct: 100 RAHTATVRSVHFC---SDGQSFVTASDDKTVKVW-ATHRQKFLFSLSQHINWVRCAKFSP 155
Query: 303 CGRRILSGGFDFALHLTDLETGTQLFS--GRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
GR I+S D + L D + + S F +T + FHP I G + +K
Sbjct: 156 DGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGF-VTYVDFHPSGTCI-AAAGMDNTVKV 213
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDAST 399
WD+RT ++++ Y+ + F G+ ++++ ST
Sbjct: 214 WDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 252
Score = 52.4 bits (124), Expect = 1e-06
Identities = 57/274 (20%), Positives = 98/274 (35%), Gaps = 17/274 (6%)
Query: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
H +GHR V + + + L S SMD VW+ + ++ H +AV +
Sbjct: 14 HFKGHRDAVTCVDFS---INTKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNF 69
Query: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
+P G + SG D + + + R+ D F+ +K
Sbjct: 70 SPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKV 129
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
W K + S I F +G +S++D D+T+ WD + + +
Sbjct: 130 WATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASD-------DKTVKLWDKSSRECVHS 182
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
H F + HP A N + ++ V +R+ + + V G S
Sbjct: 183 YCEHGGFVT-YVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNGLSF--- 237
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGH 514
P G+ L+T S+D + + TL GH
Sbjct: 238 -HPSGNYLITASSDSTLKILDLMEGRLLYTLHGH 270
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCG 304
H G V + + P + + MD T KVW+ V + LQ Y LH+ AV + P G
Sbjct: 186 HGGFVTYVDFHP---SGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNGLSFHPSG 241
Query: 305 RRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAW 361
+++ D L + DL G L++ T + F GG ++ W
Sbjct: 242 NYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 39.7 bits (91), Expect = 0.007
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 26/258 (10%)
Query: 291 HTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNI 348
H +AV ++ +++ SG D L + ++ ++ F+G D +T + F P H +
Sbjct: 18 HRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKD-AVTCVNFSPSGH-L 75
Query: 349 FLCGGFSSEMKAWDIRT---GKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
G ++ W V R++ AT++ + F +G F++++D D+
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRS---VHFCSDGQSFVTASD-------DK 125
Query: 406 TIIAWDFRTSAKISNQIFHERFT-CPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRR 464
T+ W + + H + C + P + ++ ++ + L+ + SR
Sbjct: 126 TVKVWATHRQKFLFSLSQHINWVRCAKFS--PDGRLIVSASDDKTVKLWD-----KSSRE 178
Query: 465 RRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYH 524
+ + G+ + P G + D V ++ RT Q H+ A G ++H
Sbjct: 179 CVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFH 238
Query: 525 PVLPSVLATCSWGGDMKI 542
P + L T S +KI
Sbjct: 239 P-SGNYLITASSDSTLKI 255
>gi|239787754 WD repeat domain 51A isoform 1 [Homo sapiens]
Length = 407
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
R H V ++ +C S ++ S DKT KVW A L + S H VR A+++P
Sbjct: 100 RAHTATVRSVHFC---SDGQSFVTASDDKTVKVW-ATHRQKFLFSLSQHINWVRCAKFSP 155
Query: 303 CGRRILSGGFDFALHLTDLETGTQLFS--GRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
GR I+S D + L D + + S F +T + FHP I G + +K
Sbjct: 156 DGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGF-VTYVDFHPSGTCI-AAAGMDNTVKV 213
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDAST 399
WD+RT ++++ Y+ + F G+ ++++ ST
Sbjct: 214 WDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 252
Score = 52.4 bits (124), Expect = 1e-06
Identities = 57/274 (20%), Positives = 98/274 (35%), Gaps = 17/274 (6%)
Query: 241 HLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARW 300
H +GHR V + + + L S SMD VW+ + ++ H +AV +
Sbjct: 14 HFKGHRDAVTCVDFS---INTKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNF 69
Query: 301 APCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKA 360
+P G + SG D + + + R+ D F+ +K
Sbjct: 70 SPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKV 129
Query: 361 WDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISN 420
W K + S I F +G +S++D D+T+ WD + + +
Sbjct: 130 WATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASD-------DKTVKLWDKSSRECVHS 182
Query: 421 QIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCE 480
H F + HP A N + ++ V +R+ + + V G S
Sbjct: 183 YCEHGGFVT-YVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNGLSF--- 237
Query: 481 CSPGGDLLVTGSADGRVLMYSFRTASRACTLQGH 514
P G+ L+T S+D + + TL GH
Sbjct: 238 -HPSGNYLITASSDSTLKILDLMEGRLLYTLHGH 270
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCG 304
H G V + + P + + MD T KVW+ V + LQ Y LH+ AV + P G
Sbjct: 186 HGGFVTYVDFHP---SGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNGLSFHPSG 241
Query: 305 RRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAW 361
+++ D L + DL G L++ T + F GG ++ W
Sbjct: 242 NYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 39.7 bits (91), Expect = 0.007
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 26/258 (10%)
Query: 291 HTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNI 348
H +AV ++ +++ SG D L + ++ ++ F+G D +T + F P H +
Sbjct: 18 HRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKD-AVTCVNFSPSGH-L 75
Query: 349 FLCGGFSSEMKAWDIRT---GKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADR 405
G ++ W V R++ AT++ + F +G F++++D D+
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRS---VHFCSDGQSFVTASD-------DK 125
Query: 406 TIIAWDFRTSAKISNQIFHERFT-CPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRR 464
T+ W + + H + C + P + ++ ++ + L+ + SR
Sbjct: 126 TVKVWATHRQKFLFSLSQHINWVRCAKFS--PDGRLIVSASDDKTVKLWD-----KSSRE 178
Query: 465 RRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYH 524
+ + G+ + P G + D V ++ RT Q H+ A G ++H
Sbjct: 179 CVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFH 238
Query: 525 PVLPSVLATCSWGGDMKI 542
P + L T S +KI
Sbjct: 239 P-SGNYLITASSDSTLKI 255
>gi|20357529 guanine nucleotide-binding protein, beta-2 subunit
[Homo sapiens]
Length = 340
Score = 58.9 bits (141), Expect = 1e-08
Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 29/311 (9%)
Query: 242 LRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWA 301
LRGH + + W + S +L+S S D +W++ + + L + V +A
Sbjct: 51 LRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYA 106
Query: 302 PCGRRILSGGFDFALHLTDLETG------TQLFSGRSDFRITTLKFHPKDHNIFLCGGFS 355
P G + GG D + L+T ++ G + + ++ +F D N +
Sbjct: 107 PSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY-LSCCRF--LDDNQIITSSGD 163
Query: 356 SEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTS 415
+ WDI TG+ + + + +G F+S + D +I WD R S
Sbjct: 164 TTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSG-------ACDASIKLWDVRDS 216
Query: 416 AKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGY 475
I HE ++A P F ++ LF + Y +
Sbjct: 217 MCRQTFIGHES-DINAVAFFPNGYAFTTGSDDATCRLFDLRADQEL---LMYSHDNIICG 272
Query: 476 SVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQ--ACVGTTYHPVLPSVLAT 533
S G LL+ G D ++ RA L GH +C+G T + +AT
Sbjct: 273 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGM---AVAT 329
Query: 534 CSWGGDMKIWH 544
SW +KIW+
Sbjct: 330 GSWDSFLKIWN 340
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 58.5 bits (140), Expect = 1e-08
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Query: 237 KVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVR 296
K+L L GH+ + ++ + P + S S D K+W+ G C+ Y H++AVR
Sbjct: 96 KILRTLMGHKANICSLDFHPY---GEFVASGSQDTNIKLWDIRRKG-CVFRYRGHSQAVR 151
Query: 297 AARWAPCGRRILSGGFDFALHLTDLETGTQL--FSGRSDFRITTLKFHPKDHNIFLCGGF 354
R++P G+ + S D + L DL G + F G + + ++FHP ++ + G
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTG-PVNVVEFHPNEY-LLASGSS 209
Query: 355 SSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTR 400
++ WD+ +V+ + +LF +G S S R
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLR 255
Score = 43.1 bits (100), Expect = 6e-04
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 13/185 (7%)
Query: 257 VLSK-SHMLLSTSMDKT-FKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDF 314
VL K S LL+T D +W+ ++ +C+ + + HT V + R I++G
Sbjct: 27 VLGKASGRLLATGGDDCRVNLWS-INKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSG 85
Query: 315 ALHLTDLETGTQLFSGRS-DFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYK 373
++ + DLE L + I +L FHP + G + +K WDIR + Y+
Sbjct: 86 SIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFV-ASGSQDTNIKLWDIRRKGCVFRYR 144
Query: 374 ATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLA 433
Q + F +G S+ D D T+ WD T+ K+ ++ +
Sbjct: 145 GHSQAVRCLRFSPDGKWLASAAD-------DHTVKLWDL-TAGKMMSEFPGHTGPVNVVE 196
Query: 434 LHPRE 438
HP E
Sbjct: 197 FHPNE 201
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 486 DLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543
+L+V GS G + ++ A TL GH +HP +A+ S ++K+W
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLW 132
Score = 29.3 bits (64), Expect = 9.6
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 402 SADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRM 461
S +I WD + + + H+ C SL HP + + + L+
Sbjct: 82 SQSGSIRVWDLEAAKILRTLMGHKANIC-SLDFHPYGEFVASGSQDTNIKLWDI------ 134
Query: 462 SRRR----RYEGHKVEGYSVGC-ECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQ 516
RR+ RY GH +V C SP G L + + D V ++ GHT
Sbjct: 135 -RRKGCVFRYRGHS---QAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTG 190
Query: 517 ACVGTTYHP 525
+HP
Sbjct: 191 PVNVVEFHP 199
>gi|134133292 WD repeat domain 27 [Homo sapiens]
Length = 857
Score = 56.6 bits (135), Expect = 6e-08
Identities = 75/314 (23%), Positives = 121/314 (38%), Gaps = 38/314 (12%)
Query: 253 QWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGF 312
QW +H+LL D + AV SGH AV A W+ R +LS
Sbjct: 556 QWLACGLANHLLLV--FDASLTGTPAVFSGH--------DGAVNAVCWSQDRRWLLSAAR 605
Query: 313 DFALHLTDLETGT-QLFSGRSDFR--ITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGK-V 368
D L + L G+ F I + +F+ D I L G ++ + I T K
Sbjct: 606 DGTLRMWSARGAELALLLGKDMFSKPIQSAQFYYIDAFILLSSGPEFQLLRYHIDTCKDE 665
Query: 369 MRSYKATIQQTLDILFLREGSEFLSSTDAST--------RDSADRTIIAWDFRTS----- 415
++ YK + L G+ ++S A +RT+ +D
Sbjct: 666 IKRYKQKSKSKLICRLSTTGAVDMTSLSAVNDFYSHIVLAAGRNRTVEVFDLNAGCSAAV 725
Query: 416 -AKISNQIFHERFTCPSLALHPREP----VFLAQTNGNYLALFSTVWPYRMSR-RRRYEG 469
A+ ++ H+ + ++P +FL G+ + L W R R R +EG
Sbjct: 726 IAEAHSRPVHQICQNKGSSFTTQQPQAYNLFLTTAIGDGMRL----WDLRTLRCERHFEG 781
Query: 470 HKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPS 529
H GY G SP G G+ D +Y +++ + L GHT G ++P P
Sbjct: 782 HPTRGYPCGIAFSPCGRFAACGAEDRHAYVYEMGSSTFSHRLAGHTDTVTGVAFNPSAPQ 841
Query: 530 VLATCSWGGDMKIW 543
LAT + G ++++
Sbjct: 842 -LATATLDGKLQLF 854
Score = 38.5 bits (88), Expect = 0.016
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 242 LRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVW-----NAVDSGHCLQTYSLHTEAVR 296
L+GH GPV +++CP ++ L+S S D+ FKVW + + S L Y L + +
Sbjct: 190 LQGHLGPVTAVEFCP--WRAGTLISASEDRGFKVWDHCTGSLIYSSSVLSAYPLLSLFID 247
Query: 297 AARWAPCGRRILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLC 351
A R++++G D L + L G R D R T F + LC
Sbjct: 248 AE-----SRQLVTGCADGQLWIFSLMDGHHYRRVARVDLRKKTETFSTRRVKSGLC 298
>gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens]
Length = 589
Score = 56.2 bits (134), Expect = 7e-08
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 244 GHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPC 303
GH V+ +++ P S+ L + S DKT ++W+A G+ ++ ++ H V + ++P
Sbjct: 424 GHLADVDCVKFHP---NSNYLATGSTDKTVRLWSA-QQGNSVRLFTGHRGPVLSLAFSPN 479
Query: 304 GRRILSGGFDFALHLTDLETGT--QLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAW 361
G+ + S G D L L DL +GT + G +D IT+L F P D + + ++ W
Sbjct: 480 GKYLASAGEDQRLKLWDLASGTLYKELRGHTD-NITSLTFSP-DSGLIASASMDNSVRVW 537
Query: 362 DIR 364
DIR
Sbjct: 538 DIR 540
Score = 38.9 bits (89), Expect = 0.012
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 402 SADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFST-----V 456
S DRT W F + + H + HP N NYLA ST +
Sbjct: 403 SHDRTARLWSFDRTYPLRIYAGHLA-DVDCVKFHP---------NSNYLATGSTDKTVRL 452
Query: 457 WPYRMSRR-RRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHT 515
W + R + GH+ G + SP G L + D R+ ++ + + L+GHT
Sbjct: 453 WSAQQGNSVRLFTGHR--GPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510
Query: 516 QACVGTTYHPVLPSVLATCSWGGDMKIW 543
T+ P ++A+ S +++W
Sbjct: 511 DNITSLTFSPD-SGLIASASMDNSVRVW 537
>gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens]
Length = 446
Score = 55.8 bits (133), Expect = 1e-07
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 244 GHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWN--AVDSGHC-LQTYSLHTEAVRAARW 300
GH V +QW P +++ + S S D + ++W+ A S C L T + H V W
Sbjct: 259 GHTRSVEDLQWSP--TENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISW 316
Query: 301 APCGRRILSGGFDFALHLTDL---ETGTQLFSGRSDFR-ITTLKFHPKDHNIFLCGGFSS 356
+ +LSGG D AL + DL ++G+ + + + +T++++HP+D +F G
Sbjct: 317 SRREPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADH 376
Query: 357 EMKAWDI 363
++ WD+
Sbjct: 377 QITQWDL 383
Score = 45.1 bits (105), Expect = 2e-04
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 29/203 (14%)
Query: 225 LNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSG-- 282
L + ++ K +F GH G + W P ++ LL+ K +W D G
Sbjct: 193 LAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGR--LLTGDCQKNIHLWTPTDGGSW 250
Query: 283 HCLQT-YSLHTEAVRAARWAPCGRRILSG-GFDFALHLTDLETGTQLFSGRSDFRITTLK 340
H Q + HT +V +W+P + + D ++ + D+ +TT
Sbjct: 251 HVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPS-----KACMLTTAT 305
Query: 341 FHPKDHNIF---------LCGGFSSEMKAWDIR---TGKVMRSYKATIQQTLDILFLREG 388
H D N+ L GG +K WD+R +G + ++K + + + +
Sbjct: 306 AHDGDVNVISWSRREPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQD 365
Query: 389 SEFLSSTDASTRDSADRTIIAWD 411
S +++ AD I WD
Sbjct: 366 SGVFAAS------GADHQITQWD 382
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 55.8 bits (133), Expect = 1e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 233 TVPRKVLFH-LRGHRGPVNTIQWCPV------LSKSHMLLSTSMDKTFKVWNAVDSGHCL 285
++ ++V H L+ H + TI+W P + + ML S S D T ++W+ ++ G C
Sbjct: 389 SMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD-IERGVCT 447
Query: 286 QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGR 331
T + H E V + ++P G+ + SG FD +H+ + ++G + S R
Sbjct: 448 HTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYR 493
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
+GH VN I+W P +L S S D T K+W+ + C+ H + + +W+P
Sbjct: 358 QGHTNEVNAIKWDP---SGMLLASCSDDMTLKIWS-MKQEVCIHDLQAHNKEIYTIKWSP 413
Query: 303 CGRR---------ILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLCG 352
G + S FD + L D+E G + + + ++ F P D G
Sbjct: 414 TGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSP-DGKYLASG 472
Query: 353 GFSSEMKAWDIRTGKVMRSYKAT 375
F + W+ ++G ++ SY+ T
Sbjct: 473 SFDKCVHIWNTQSGNLVHSYRGT 495
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 23/191 (12%)
Query: 225 LNSHYK------ETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA 278
+N+H K E +P LRGH V W PV S +L S S D T ++WN
Sbjct: 154 VNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPV---SDLLASGSGDSTARIWNL 210
Query: 279 VDSG----------HCLQTYSLHTEA---VRAARWAPCGRRILSGGFDFALHLTDLETGT 325
++ HC++ + V + W G + +G +D + +
Sbjct: 211 NENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNL 270
Query: 326 QLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFL 385
G+ I LK++ K N L G WD TG+ + + LD+ +
Sbjct: 271 ASTLGQHKGPIFALKWNRKG-NYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQ 329
Query: 386 REGSEFLSSTD 396
+ STD
Sbjct: 330 NNTTFASCSTD 340
Score = 39.3 bits (90), Expect = 0.009
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 59/216 (27%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA-------------------------- 278
H+GP+ ++W K + +LS +DKT +W+A
Sbjct: 277 HKGPIFALKWN---RKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 333
Query: 279 ---VDSGHCL-----------QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETG 324
+ C+ +T+ HT V A +W P G + S D L + ++
Sbjct: 334 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 393
Query: 325 TQLFSGRS-DFRITTLKFHP-------KDHNIFLC-GGFSSEMKAWDIRTGKVMRSYKAT 375
+ ++ + I T+K+ P + NI L F S ++ WDI G +
Sbjct: 394 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH 453
Query: 376 IQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
+ + F +G ++L+S S D+ + W+
Sbjct: 454 QEPVYSVAFSPDG-KYLAS------GSFDKCVHIWN 482
Score = 29.3 bits (64), Expect = 9.6
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 469 GHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLP 528
GH+ E + C +P DLL +GS D +++ S + Q + C+ H V P
Sbjct: 179 GHESEVFI--CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV-P 235
Query: 529 S--------------VLATCSWGGDMKIW 543
S +LAT S+ G +IW
Sbjct: 236 SNKDVTSLDWNTNGTLLATGSYDGFARIW 264
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 55.8 bits (133), Expect = 1e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 233 TVPRKVLFH-LRGHRGPVNTIQWCPV------LSKSHMLLSTSMDKTFKVWNAVDSGHCL 285
++ ++V H L+ H + TI+W P + + ML S S D T ++W+ ++ G C
Sbjct: 389 SMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD-IERGVCT 447
Query: 286 QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGR 331
T + H E V + ++P G+ + SG FD +H+ + ++G + S R
Sbjct: 448 HTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYR 493
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
+GH VN I+W P +L S S D T K+W+ + C+ H + + +W+P
Sbjct: 358 QGHTNEVNAIKWDP---SGMLLASCSDDMTLKIWS-MKQEVCIHDLQAHNKEIYTIKWSP 413
Query: 303 CGRR---------ILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLCG 352
G + S FD + L D+E G + + + ++ F P D G
Sbjct: 414 TGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSP-DGKYLASG 472
Query: 353 GFSSEMKAWDIRTGKVMRSYKAT 375
F + W+ ++G ++ SY+ T
Sbjct: 473 SFDKCVHIWNTQSGNLVHSYRGT 495
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 23/191 (12%)
Query: 225 LNSHYK------ETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA 278
+N+H K E +P LRGH V W PV S +L S S D T ++WN
Sbjct: 154 VNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPV---SDLLASGSGDSTARIWNL 210
Query: 279 VDSG----------HCLQTYSLHTEA---VRAARWAPCGRRILSGGFDFALHLTDLETGT 325
++ HC++ + V + W G + +G +D + +
Sbjct: 211 NENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNL 270
Query: 326 QLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFL 385
G+ I LK++ K N L G WD TG+ + + LD+ +
Sbjct: 271 ASTLGQHKGPIFALKWNRKG-NYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQ 329
Query: 386 REGSEFLSSTD 396
+ STD
Sbjct: 330 NNTTFASCSTD 340
Score = 39.3 bits (90), Expect = 0.009
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 59/216 (27%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA-------------------------- 278
H+GP+ ++W K + +LS +DKT +W+A
Sbjct: 277 HKGPIFALKWN---RKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 333
Query: 279 ---VDSGHCL-----------QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETG 324
+ C+ +T+ HT V A +W P G + S D L + ++
Sbjct: 334 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 393
Query: 325 TQLFSGRS-DFRITTLKFHP-------KDHNIFLC-GGFSSEMKAWDIRTGKVMRSYKAT 375
+ ++ + I T+K+ P + NI L F S ++ WDI G +
Sbjct: 394 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH 453
Query: 376 IQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
+ + F +G ++L+S S D+ + W+
Sbjct: 454 QEPVYSVAFSPDG-KYLAS------GSFDKCVHIWN 482
Score = 29.3 bits (64), Expect = 9.6
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 469 GHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLP 528
GH+ E + C +P DLL +GS D +++ S + Q + C+ H V P
Sbjct: 179 GHESEVFI--CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV-P 235
Query: 529 S--------------VLATCSWGGDMKIW 543
S +LAT S+ G +IW
Sbjct: 236 SNKDVTSLDWNTNGTLLATGSYDGFARIW 264
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 55.8 bits (133), Expect = 1e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 233 TVPRKVLFH-LRGHRGPVNTIQWCPV------LSKSHMLLSTSMDKTFKVWNAVDSGHCL 285
++ ++V H L+ H + TI+W P + + ML S S D T ++W+ ++ G C
Sbjct: 440 SMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD-IERGVCT 498
Query: 286 QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGR 331
T + H E V + ++P G+ + SG FD +H+ + ++G + S R
Sbjct: 499 HTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYR 544
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
+GH VN I+W P +L S S D T K+W+ + C+ H + + +W+P
Sbjct: 409 QGHTNEVNAIKWDP---SGMLLASCSDDMTLKIWS-MKQEVCIHDLQAHNKEIYTIKWSP 464
Query: 303 CGRR---------ILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLCG 352
G + S FD + L D+E G + + + ++ F P D G
Sbjct: 465 TGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSP-DGKYLASG 523
Query: 353 GFSSEMKAWDIRTGKVMRSYKAT 375
F + W+ ++G ++ SY+ T
Sbjct: 524 SFDKCVHIWNTQSGNLVHSYRGT 546
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 23/191 (12%)
Query: 225 LNSHYK------ETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA 278
+N+H K E +P LRGH V W PV S +L S S D T ++WN
Sbjct: 205 VNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPV---SDLLASGSGDSTARIWNL 261
Query: 279 VDSG----------HCLQTYSLHTEA---VRAARWAPCGRRILSGGFDFALHLTDLETGT 325
++ HC++ + V + W G + +G +D + +
Sbjct: 262 NENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNL 321
Query: 326 QLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFL 385
G+ I LK++ K N L G WD TG+ + + LD+ +
Sbjct: 322 ASTLGQHKGPIFALKWNRKG-NYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQ 380
Query: 386 REGSEFLSSTD 396
+ STD
Sbjct: 381 NNTTFASCSTD 391
Score = 39.3 bits (90), Expect = 0.009
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 59/216 (27%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA-------------------------- 278
H+GP+ ++W K + +LS +DKT +W+A
Sbjct: 328 HKGPIFALKWN---RKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 384
Query: 279 ---VDSGHCL-----------QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETG 324
+ C+ +T+ HT V A +W P G + S D L + ++
Sbjct: 385 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 444
Query: 325 TQLFSGRS-DFRITTLKFHP-------KDHNIFLC-GGFSSEMKAWDIRTGKVMRSYKAT 375
+ ++ + I T+K+ P + NI L F S ++ WDI G +
Sbjct: 445 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH 504
Query: 376 IQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
+ + F +G ++L+S S D+ + W+
Sbjct: 505 QEPVYSVAFSPDG-KYLAS------GSFDKCVHIWN 533
Score = 29.3 bits (64), Expect = 9.6
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 469 GHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLP 528
GH+ E + C +P DLL +GS D +++ S + Q + C+ H V P
Sbjct: 230 GHESEVFI--CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV-P 286
Query: 529 S--------------VLATCSWGGDMKIW 543
S +LAT S+ G +IW
Sbjct: 287 SNKDVTSLDWNTNGTLLATGSYDGFARIW 315
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 55.8 bits (133), Expect = 1e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 233 TVPRKVLFH-LRGHRGPVNTIQWCPV------LSKSHMLLSTSMDKTFKVWNAVDSGHCL 285
++ ++V H L+ H + TI+W P + + ML S S D T ++W+ ++ G C
Sbjct: 440 SMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD-IERGVCT 498
Query: 286 QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGR 331
T + H E V + ++P G+ + SG FD +H+ + ++G + S R
Sbjct: 499 HTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYR 544
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 243 RGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAP 302
+GH VN I+W P +L S S D T K+W+ + C+ H + + +W+P
Sbjct: 409 QGHTNEVNAIKWDP---SGMLLASCSDDMTLKIWS-MKQEVCIHDLQAHNKEIYTIKWSP 464
Query: 303 CGRR---------ILSGGFDFALHLTDLETGTQLFS-GRSDFRITTLKFHPKDHNIFLCG 352
G + S FD + L D+E G + + + ++ F P D G
Sbjct: 465 TGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSP-DGKYLASG 523
Query: 353 GFSSEMKAWDIRTGKVMRSYKAT 375
F + W+ ++G ++ SY+ T
Sbjct: 524 SFDKCVHIWNTQSGNLVHSYRGT 546
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 23/191 (12%)
Query: 225 LNSHYK------ETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA 278
+N+H K E +P LRGH V W PV S +L S S D T ++WN
Sbjct: 205 VNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPV---SDLLASGSGDSTARIWNL 261
Query: 279 VDSG----------HCLQTYSLHTEA---VRAARWAPCGRRILSGGFDFALHLTDLETGT 325
++ HC++ + V + W G + +G +D + +
Sbjct: 262 NENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNL 321
Query: 326 QLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFL 385
G+ I LK++ K N L G WD TG+ + + LD+ +
Sbjct: 322 ASTLGQHKGPIFALKWNRKG-NYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQ 380
Query: 386 REGSEFLSSTD 396
+ STD
Sbjct: 381 NNTTFASCSTD 391
Score = 39.3 bits (90), Expect = 0.009
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 59/216 (27%)
Query: 245 HRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNA-------------------------- 278
H+GP+ ++W K + +LS +DKT +W+A
Sbjct: 328 HKGPIFALKWN---RKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTT 384
Query: 279 ---VDSGHCL-----------QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETG 324
+ C+ +T+ HT V A +W P G + S D L + ++
Sbjct: 385 FASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQE 444
Query: 325 TQLFSGRS-DFRITTLKFHP-------KDHNIFLC-GGFSSEMKAWDIRTGKVMRSYKAT 375
+ ++ + I T+K+ P + NI L F S ++ WDI G +
Sbjct: 445 VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKH 504
Query: 376 IQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWD 411
+ + F +G ++L+S S D+ + W+
Sbjct: 505 QEPVYSVAFSPDG-KYLAS------GSFDKCVHIWN 533
Score = 29.3 bits (64), Expect = 9.6
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 469 GHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLP 528
GH+ E + C +P DLL +GS D +++ S + Q + C+ H V P
Sbjct: 230 GHESEVFI--CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV-P 286
Query: 529 S--------------VLATCSWGGDMKIW 543
S +LAT S+ G +IW
Sbjct: 287 SNKDVTSLDWNTNGTLLATGSYDGFARIW 315
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,848,777
Number of Sequences: 37866
Number of extensions: 1126934
Number of successful extensions: 4668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 3698
Number of HSP's gapped (non-prelim): 828
length of query: 544
length of database: 18,247,518
effective HSP length: 107
effective length of query: 437
effective length of database: 14,195,856
effective search space: 6203589072
effective search space used: 6203589072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.