Guide to the Human Genome
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Name: WDR25 Sequence: fasta or formatted (544aa) NCBI GI: 241896933
Description:

WD repeat domain 25

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt mRNA [544aa] WD repeat domain 25
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         40           3
 C cysteine            2.8         15           1
 D aspartate           4.6         25           2
 E glutamate           4.2         23           1
 F phenylalanine       4.6         25           1
 G glycine             8.1         44           2
 H histidine           3.7         20           1
 I isoleucine          2.6         14           2
 K lysine              5.0         27           3
 L leucine             8.1         44           2
 M methionine          1.8         10           1
 N asparagine          1.8         10           1
 P proline             6.4         35           2
 Q glutamine           4.4         24           2
 R arginine            6.8         37           4
 S serine             10.1         55           2
 T threonine           7.7         42           2
 V valine              5.3         29           2
 W tryptophan          2.0         11           1
 Y tyrosine            2.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 25 
WDR25                 1.000   WD repeat domain 25 
CDC40                 0.112   cell division cycle 40 homolog 
WDR5                  0.076   WD repeat domain 5 
WDR5                  0.076   WD repeat domain 5 
WDR5B                 0.062   WD repeat domain 5B 
MORG1                 0.041   mitogen-activated protein kinase organizer 1 
MORG1                 0.041   mitogen-activated protein kinase organizer 1 
WDR38                 0.040   WD repeat domain 38 
WDR69                 0.040   WD repeat domain 69 
SNRNP40               0.039   WD repeat domain 57 (U5 snRNP specific) 
PRPF19                0.035   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
FBXW7                 0.033   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.033   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.033   F-box and WD repeat domain containing 7 isoform 2 [H...
PRPF4                 0.032   PRP4 pre-mRNA processing factor 4 homolog 
TBL1XR1               0.032   transducin (beta)-like 1 X-linked receptor 1 
WDR48                 0.032   WD repeat domain 48 
WDR51A                0.031   WD repeat domain 51A isoform 3 
WDR51A                0.031   WD repeat domain 51A isoform 2 
WDR51A                0.031   WD repeat domain 51A isoform 1 
GNB2                  0.031   guanine nucleotide-binding protein, beta-2 subunit [...
KATNB1                0.031   katanin p80 subunit B 1 
WDR27                 0.029   WD repeat domain 27 
TAF5L                 0.028   PCAF associated factor 65 beta isoform a 
GRWD1                 0.028   glutamate-rich WD repeat containing 1 
TBL1X                 0.028   transducin beta-like 1X isoform b 
TBL1X                 0.028   transducin beta-like 1X isoform b 
TBL1X                 0.028   transducin beta-like 1X isoform a 
TBL1X                 0.028   transducin beta-like 1X isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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