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Search of human proteins with 239757427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo
sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo ... 376 e-105
gi|239751944 PREDICTED: hypothetical protein [Homo sapiens] 376 e-105
gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo ... 334 3e-92
gi|112421108 capicua homolog [Homo sapiens] 35 0.036
gi|21735415 centromere protein B [Homo sapiens] 34 0.081
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.24
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.24
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 31 0.69
gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo sap... 31 0.69
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 31 0.69
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 30 0.90
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 30 0.90
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 30 0.90
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 30 0.90
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 30 0.90
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 30 0.90
gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo ... 30 1.2
gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo ... 30 1.2
gi|62953127 polyhomeotic 1-like [Homo sapiens] 30 1.5
gi|151301154 mucin 6, gastric [Homo sapiens] 30 1.5
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 30 1.5
gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] 30 1.5
gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] 30 1.5
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B... 29 2.0
gi|109150416 peroxidasin [Homo sapiens] 29 2.0
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 29 2.0
gi|9789865 eukaryotic translation initiation factor 4E nuclear i... 29 2.0
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 29 2.6
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 29 2.6
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 29 2.6
>gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo
sapiens]
Length = 184
Score = 376 bits (965), Expect = e-105
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV 60
MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV
Sbjct: 1 MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV 60
Query: 61 AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL 120
AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL
Sbjct: 61 AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL 120
Query: 121 LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR 180
LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR
Sbjct: 121 LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR 180
Query: 181 TVWR 184
TVWR
Sbjct: 181 TVWR 184
>gi|239751944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 376 bits (965), Expect = e-105
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV 60
MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV
Sbjct: 1 MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV 60
Query: 61 AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL 120
AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL
Sbjct: 61 AVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLL 120
Query: 121 LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR 180
LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR
Sbjct: 121 LPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGAR 180
Query: 181 TVWR 184
TVWR
Sbjct: 181 TVWR 184
>gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo
sapiens]
Length = 255
Score = 334 bits (856), Expect = 3e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 21 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 80
VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS
Sbjct: 92 VPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 151
Query: 81 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 140
GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP
Sbjct: 152 GDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 211
Query: 141 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 184
GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR
Sbjct: 212 GHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPGARTVWR 255
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 35.0 bits (79), Expect = 0.036
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 2 TKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVA 61
T P+ ++ + P P A P P + S+R T L N K L +
Sbjct: 831 TLPQQLQ--VAPAPAPAPGTKAAAPSGPAPTTSIRFT---LPPGTSTNGKVLAATAPTPG 885
Query: 62 VP---RIPSAP----QAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPL 114
+P +PSAP Q+ SP PP G A L + P + + G G Q LPL
Sbjct: 886 IPILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRG-GGAGQPLPL 944
Query: 115 LLLPLLLPQPRYPVRLVQPP--VLRLVP 140
+ P +P QPP +++L P
Sbjct: 945 VSPPFSVPVQNG----AQPPSKIIQLTP 968
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 33.9 bits (76), Expect = 0.081
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 44 KSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPSG 81
+ G +C + A AR A PR P+AP ASPA VP G
Sbjct: 129 RHGVVSCSGVARARARNAAPRTPAAP--ASPAAVPSEG 164
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.3 bits (72), Expect = 0.24
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 18 AHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASP--- 74
AHQ H PI+P T +L+ ++L +G I + + P + + +SP
Sbjct: 1848 AHQ---HSPISPRTQDALQQRPSVLHNTGMKGI----ITAVEPSTPTVLRSTSTSSPVRP 1900
Query: 75 -AGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQP 133
A PP+ H PL G++ P L+ P+LL P+ R+ +P
Sbjct: 1901 AATFPPA--------THCPLGGTLDGVY-----------PTLMEPVLL--PKEAPRVARP 1939
Query: 134 PVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 169
R GH GL +P G PL
Sbjct: 1940 ERPRADTGHAFLAKPPARSGLEPASSPSKGSEPRPL 1975
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.3 bits (72), Expect = 0.24
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 18 AHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASP--- 74
AHQ H PI+P T +L+ ++L +G I + + P + + +SP
Sbjct: 1864 AHQ---HSPISPRTQDALQQRPSVLHNTGMKGI----ITAVEPSTPTVLRSTSTSSPVRP 1916
Query: 75 -AGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQP 133
A PP+ H PL G++ P L+ P+LL P+ R+ +P
Sbjct: 1917 AATFPPA--------THCPLGGTLDGVY-----------PTLMEPVLL--PKEAPRVARP 1955
Query: 134 PVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPL 169
R GH GL +P G PL
Sbjct: 1956 ERPRADTGHAFLAKPPARSGLEPASSPSKGSEPRPL 1991
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 30.8 bits (68), Expect = 0.69
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 120 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 167
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 364 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 411
>gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo
sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 0.69
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 120 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 167
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 153 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 200
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 30.8 bits (68), Expect = 0.69
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 120 LLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHL 167
L P P+ P+R +PP LRL P Q + G ++G A S + H+
Sbjct: 364 LSPHPQSPLRAPKPPDLRLAPLGQERLQGPWVRGSAGAVRETSAITHI 411
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 30.4 bits (67), Expect = 0.90
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 106 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 154
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 659 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 697
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 0.90
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 106 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 154
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 613 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 651
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 0.90
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 106 AGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL 154
AGL +P P+L P+ PV L++P GH VL GVL+G+
Sbjct: 613 AGLTPHVP----PVLGAAPQQPVALIRPD------GHAAPVLAGVLEGV 651
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 30.4 bits (67), Expect = 0.90
Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 13 PLPTCAHQVPEHCPITPLTS---------GSLRLTGTLLSKSGPANCKSLHIAS-ARVAV 62
P P +VP P++P S GS L L S G + AS + A
Sbjct: 770 PGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSFASDPKYAT 829
Query: 63 PRIPSAP-QAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQR---------- 111
P++ AP A P +P D + H+ LL RP +L L+
Sbjct: 830 PQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPS-YLERYQRFLREAQSPEEPTPL 888
Query: 112 -LPLLLLPLLLPQPRYPVRLVQP 133
+PLLL P P P P V+P
Sbjct: 889 PVPLLLPPPSTPAPAAPTATVRP 911
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 30.4 bits (67), Expect = 0.90
Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 13 PLPTCAHQVPEHCPITPLTS---------GSLRLTGTLLSKSGPANCKSLHIAS-ARVAV 62
P P +VP P++P S GS L L S G + AS + A
Sbjct: 848 PGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSFASDPKYAT 907
Query: 63 PRIPSAP-QAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQR---------- 111
P++ AP A P +P D + H+ LL RP +L L+
Sbjct: 908 PQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPS-YLERYQRFLREAQSPEEPTPL 966
Query: 112 -LPLLLLPLLLPQPRYPVRLVQP 133
+PLLL P P P P V+P
Sbjct: 967 PVPLLLPPPSTPAPAAPTATVRP 989
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 30.4 bits (67), Expect = 0.90
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 4 PEAMEDIIKPLPT-CAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAV 62
P A ++ P+PT +P P S+ + T SGP + +L A A V
Sbjct: 323 PSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMP-TPTPSSGPPSTPTLIPAFAPTPV 381
Query: 63 PRIPSAP---------QAASPAGVPPSGDV-AHLQLQHFPLLALRPGLHLFGLAGLLQRL 112
P AP AA+PA +P S + A L A + A +Q++
Sbjct: 382 PAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQ--------APAMQKV 433
Query: 113 PLLLLPLLLPQPRYPVRLVQPP 134
PL P + P P+ + PP
Sbjct: 434 PLSFQPGTVLTPSQPLVYIPPP 455
>gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo
sapiens]
Length = 220
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 109 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 167
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
Query: 168 PL 169
L
Sbjct: 184 LL 185
>gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
Length = 220
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 109 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 167
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
Query: 168 PL 169
L
Sbjct: 184 LL 185
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 29.6 bits (65), Expect = 1.5
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 24/113 (21%)
Query: 66 PSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLLPQPR 125
P PQ VPPS Q L ++P +LQ PL L P P+P
Sbjct: 448 PQPPQVPPTQQVPPSQSQQQAQT-----LVVQP---------MLQSSPLSLPPDAAPKPP 493
Query: 126 YPVRLVQPPVLRLVPGHQLAVLGGVLQGLALRQNPGSGLVHLPLHLGHELHPG 178
P++ +PPV + P LG A + P H+P+ + PG
Sbjct: 494 IPIQ-SKPPVAPIKPPQ----LGAAKMSAAQQPPP-----HIPVQVVGTRQPG 536
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 26 PITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPP 79
P TP T+ S G+ + +GP S H A P PS P+ P VPP
Sbjct: 1400 PQTPHTTHSPPTAGSPVPSTGPVTATSFH---ATTTYP-TPSHPETTLPTHVPP 1449
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.6 bits (65), Expect = 1.5
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 47 PANCKSLHIASARVAVPRIPSAPQA---ASPAGVPPSGDVAHLQLQHF----PLLALRPG 99
P +L I SA +P P P A +P VPPS H +Q+ P AL P
Sbjct: 891 PPGVAALSIHSAVAQLPGQPVYPAAFPQMAPTDVPPS---PHHTVQNMRATPPQPALPPQ 947
Query: 100 LHLFGLAGLLQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVP 140
L L + L P+L PQP P + V PP L P
Sbjct: 948 PTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPPQPMLPP 988
>gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]
Length = 1004
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 TKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLR--LTGTLL---SKSGPANCKSLHIA 56
T P + PLP +H+ P+TP +G L+ G ++ + +GP++C +
Sbjct: 560 TDPRRLPGANTPLPGLSHRQGWPRPLTPPAAGGLQNHTVGIIVKTENATGPSSCPQRSLV 619
Query: 57 SARVAVPRIPSA 68
P IPS+
Sbjct: 620 PVPSLPPSIPSS 631
>gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]
Length = 704
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 TKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLR--LTGTLL---SKSGPANCKSLHIA 56
T P + PLP +H+ P+TP +G L+ G ++ + +GP++C +
Sbjct: 560 TDPRRLPGANTPLPGLSHRQGWPRPLTPPAAGGLQNHTVGIIVKTENATGPSSCPQRSLV 619
Query: 57 SARVAVPRIPSA 68
P IPS+
Sbjct: 620 PVPSLPPSIPSS 631
>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 2 [Homo sapiens]
Length = 597
Score = 29.3 bits (64), Expect = 2.0
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 19 HQVPEH---CPITPLTS---GSLRLTGTLLSK----SGPANCKSLHIASARVAVPRIPSA 68
H+ P++ P++P+TS G+ R G+L S S P+ L ++ P + S+
Sbjct: 372 HEYPKYQAEFPMSPVTSAHAGTYRCYGSLNSDPYLLSHPSEPLELVVSG-----PSMGSS 426
Query: 69 PQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLPLLLLPLLL 121
P P P D P L G HL + G+L + LLLL LLL
Sbjct: 427 PPPTGPISTPGPEDQPLTPTGSDPQSGL--GRHLGVVIGILVAVVLLLLLLLL 477
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 29.3 bits (64), Expect = 2.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 30 LTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASPAGVPPS 80
L+SG+LR++G L G C++++I ++ V + P+ PS
Sbjct: 482 LSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPS 532
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate
3B [Homo sapiens]
Length = 1043
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 15 PTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARVAVPRIPSAPQAASP 74
P A P+ C + GS+RL G LL ++ A ++ + PR+P
Sbjct: 17 PGSAGGHPQPCGVLARLGGSVRL-GALLPRAPLARARARAALARAALAPRLPHNLSLELV 75
Query: 75 AGVPPSGDVAHL 86
PP+ D A L
Sbjct: 76 VAAPPARDPASL 87
>gi|9789865 eukaryotic translation initiation factor 4E nuclear
import factor 1 [Homo sapiens]
Length = 985
Score = 29.3 bits (64), Expect = 2.0
Identities = 36/116 (31%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 54 HIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLL----ALRPGLHLFGLAGLL 109
H+ R A P Q GV P QH P L L PG+ L L G+
Sbjct: 816 HVPMVRPAHQLHPGLVQRMLAQGVHP---------QHLPSLLQTGVLPPGMDLSHLQGIS 866
Query: 110 QRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGH--QLAVLGGVLQGLALRQNPGSG 163
+ L QP YP+ P+L PG LA++ LQ L PGSG
Sbjct: 867 GPI--------LGQPFYPLPAASHPLLNPRPGTPLHLAMVQQQLQRSVLHP-PGSG 913
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 2.6
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 4 PEAMEDIIKPLPTC---AHQVPEHCPI-TPLTSGSLRLTGTLLSKSGPANCKSLHIASAR 59
PE E KP P + ++P P P T S T + K GP R
Sbjct: 170 PERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPR----------R 219
Query: 60 VAVPRIPSAPQAASPAGVPPSGDVAHLQL 88
++PR S Q SPAG P + ++++
Sbjct: 220 TSLPRDSSLSQMGSPAGDPEEEEPVYIEM 248
Score = 28.9 bits (63), Expect = 2.6
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 54 HIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLP 113
H S++ A P +P A + PP G + + LL+ RP L +F A P
Sbjct: 290 HSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPA------P 343
Query: 114 LLLLPLLLPQPRYPVRLVQPPVLRLV 139
+ P P P+ + + PVL V
Sbjct: 344 VHCSPNSDESPLTPLEVTKLPVLENV 369
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 28.9 bits (63), Expect = 2.6
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 4 PEAMEDIIKPLPTC---AHQVPEHCPI-TPLTSGSLRLTGTLLSKSGPANCKSLHIASAR 59
PE E KP P + ++P P P T S T + K GP R
Sbjct: 170 PERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPR----------R 219
Query: 60 VAVPRIPSAPQAASPAGVPPSGDVAHLQL 88
++PR S Q SPAG P + ++++
Sbjct: 220 TSLPRDSSLSQMGSPAGDPEEEEPVYIEM 248
Score = 28.9 bits (63), Expect = 2.6
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 54 HIASARVAVPRIPSAPQAASPAGVPPSGDVAHLQLQHFPLLALRPGLHLFGLAGLLQRLP 113
H S++ A P +P A + PP G + + LL+ RP L +F A P
Sbjct: 290 HSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPA------P 343
Query: 114 LLLLPLLLPQPRYPVRLVQPPVLRLV 139
+ P P P+ + + PVL V
Sbjct: 344 VHCSPNSDESPLTPLEVTKLPVLENV 369
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 1 MTKPEAMEDIIKPLPTCAHQVPEHCPITPLTSGSLRLTGTLLSKSGPANCKSLHIASARV 60
+ +P D + + P+ P T L+ ++G+ + PA A+ARV
Sbjct: 1330 LARPRPHSDDYSTMKKIPPRKPKRSPNTKLSGSYEEISGSRPGDARPAGAPG---AAARV 1386
Query: 61 AVPRIPSAPQAASPAGVPPSGD 82
P PQ A P PP +
Sbjct: 1387 LTP---GTPQCALPPAAPPGDE 1405
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,029,686
Number of Sequences: 37866
Number of extensions: 471054
Number of successful extensions: 1972
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1914
Number of HSP's gapped (non-prelim): 115
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.