Guide to the Human Genome
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Name: LOC100289538 Sequence: fasta or formatted (255aa) NCBI GI: 239746427
Description:

PREDICTED: hypothetical protein XP_002344220

Not currently referenced in the text

Other entries for this name:
alt prot {184aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         20           2
 C cysteine            1.2          3           1
 D aspartate           3.5          9           1
 E glutamate           3.5          9           1
 F phenylalanine       1.6          4           1
 G glycine             9.4         24           2
 H histidine           4.7         12           1
 I isoleucine          3.1          8           1
 K lysine              2.4          6           1
 L leucine            17.6         45           4
 M methionine          0.8          2           1
 N asparagine          2.0          5           1
 P proline            11.0         28           2
 Q glutamine           6.3         16           2
 R arginine            6.7         17           1
 S serine              5.9         15           1
 T threonine           3.1          8           1
 V valine              7.8         20           3
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344220 
LOC100292022          0.627   PREDICTED: hypothetical protein XP_002345434 
LOC100289538          0.627   PREDICTED: hypothetical protein 
CENPB                 0.018   centromere protein B 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
GRIN3B                0.014   glutamate receptor, ionotropic, N-methyl-D-aspartate...
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 1 
CIC                   0.014   capicua homolog 
LOC646396             0.012   PREDICTED: similar to hCG2042704 
LOC100133447          0.012   PREDICTED: similar to hCG2042704, partial 
LOC646396             0.012   PREDICTED: similar to hCG2042704 
MYO16                 0.012   myosin heavy chain Myr 8 
LOC100293513          0.010   PREDICTED: hypothetical protein 
LOC100291129          0.010   PREDICTED: hypothetical protein XP_002347815 
LOC100294343          0.010   PREDICTED: hypothetical protein XP_002344111 
ADAR                  0.010   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.010   adenosine deaminase, RNA-specific isoform a 
LOC100291309          0.010   PREDICTED: hypothetical protein XP_002347389 
FLJ22184              0.010   PREDICTED: hypothetical protein LOC80164 
LOC100287749          0.010   PREDICTED: hypothetical protein XP_002343252 
PHC1                  0.010   polyhomeotic 1-like 
MUC6                  0.010   mucin 6, gastric 
WNK2                  0.010   WNK lysine deficient protein kinase 2 
RXRB                  0.008   retinoid X receptor, beta 
DYRK2                 0.008   dual-specificity tyrosine-(Y)-phosphorylation regul...
DYRK2                 0.008   dual-specificity tyrosine-(Y)-phosphorylation regulat...
PXDN                  0.008   peroxidasin 
EIF4ENIF1             0.008   eukaryotic translation initiation factor 4E nuclear i...
KIAA1486              0.008   hypothetical protein LOC57624 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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