Guide to the Human Genome
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Name: LOC100133447 Sequence: fasta or formatted (300aa) NCBI GI: 169217959
Description:

PREDICTED: similar to hCG2042704, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         28           2
 C cysteine            2.3          7           1
 D aspartate           3.7         11           1
 E glutamate           5.0         15           1
 F phenylalanine       2.3          7           1
 G glycine             7.0         21           4
 H histidine           3.7         11           1
 I isoleucine          2.3          7           1
 K lysine              3.3         10           1
 L leucine            13.7         41           3
 M methionine          1.3          4           1
 N asparagine          2.3          7           2
 P proline             9.7         29           2
 Q glutamine           4.3         13           1
 R arginine            6.3         19           1
 S serine              9.3         28           2
 T threonine           4.7         14           1
 V valine              5.7         17           2
 W tryptophan          1.7          5           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042704, partial 
LOC646396             1.000   PREDICTED: similar to hCG2042704 
LOC646396             0.914   PREDICTED: similar to hCG2042704 
LOC388079             0.342   PREDICTED: similar to hCG2042704 
ZCCHC2                0.105   zinc finger, CCHC domain containing 2 
ZCCHC14               0.069   zinc finger, CCHC domain containing 14 
ZNF219                0.029   zinc finger protein 219 
ZNF219                0.029   zinc finger protein 219 
ZNF219                0.029   zinc finger protein 219 
LOC100131102          0.024   PREDICTED: hypothetical protein 
LOC100131102          0.024   PREDICTED: hypothetical protein 
MLL2                  0.024   myeloid/lymphoid or mixed-lineage leukemia 2 
SOS2                  0.020   son of sevenless homolog 2 
SETD1A                0.020   SET domain containing 1A 
BAT2                  0.020   HLA-B associated transcript-2 
MCM3AP                0.019   minichromosome maintenance complex component 3 assoc...
CDCA3                 0.019   cell division cycle associated 3 
TRIP6                 0.019   thyroid receptor-interacting protein 6 
FAM65A                0.019   hypothetical protein LOC79567 
LOC100294203          0.017   PREDICTED: hypothetical protein 
FOXD1                 0.017   forkhead box D1 
EP300                 0.015   E1A binding protein p300 
LOC645602             0.015   PREDICTED: hypothetical protein 
LOC645602             0.015   PREDICTED: hypothetical protein 
LOC645602             0.015   PREDICTED: hypothetical protein 
HIVEP3                0.015   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.015   human immunodeficiency virus type I enhancer bindin...
PRR12                 0.015   proline rich 12 
FAM171A2              0.015   family with sequence similarity 171, member A2 [Hom...
FAM113B               0.015   hypothetical protein LOC91523 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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