Guide to the Human Genome
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Name: LOC100291309 Sequence: fasta or formatted (220aa) NCBI GI: 239750418
Description:

PREDICTED: hypothetical protein XP_002347389

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         14           2
 C cysteine            2.7          6           1
 D aspartate           3.2          7           1
 E glutamate           4.1          9           1
 F phenylalanine       2.3          5           1
 G glycine            10.0         22           3
 H histidine           2.7          6           1
 I isoleucine          4.5         10           3
 K lysine              3.2          7           1
 L leucine            11.4         25           3
 M methionine          0.5          1           1
 N asparagine          3.6          8           2
 P proline             7.3         16           2
 Q glutamine           5.5         12           2
 R arginine            8.6         19           2
 S serine              9.1         20           2
 T threonine           3.6          8           1
 V valine              6.8         15           2
 W tryptophan          3.2          7           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347389 
LOC100287749          1.000   PREDICTED: hypothetical protein XP_002343252 
TRIO                  0.016   triple functional domain (PTPRF interacting) 
OTUD7A                0.014   OTU domain containing 7A 
LOC100292022          0.012   PREDICTED: hypothetical protein XP_002345434 
LOC100289538          0.012   PREDICTED: hypothetical protein 
LOC100289538          0.012   PREDICTED: hypothetical protein XP_002344220 
FBXO17                0.012   F-box protein FBG4 isoform 1 
KIF3C                 0.012   kinesin family member 3C 
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform b precurso...
LOC728806             0.009   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.009   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
FBXO17                0.009   F-box protein FBG4 isoform 2 
DCHS1                 0.009   dachsous 1 precursor 
EVX2                  0.009   even-skipped homeobox 2 
HAAO                  0.009   3-hydroxyanthranilate 3,4-dioxygenase 
NFE2L3                0.009   nuclear factor erythroid 2-like 3 
KIAA0913              0.009   hypothetical protein LOC23053 
LOC100128602          0.007   PREDICTED: hypothetical protein 
LOC100128602          0.007   PREDICTED: hypothetical protein 
C14orf93              0.007   hypothetical protein LOC60686 
C14orf93              0.007   hypothetical protein LOC60686 
C14orf93              0.007   hypothetical protein LOC60686 
LOC100291624          0.007   PREDICTED: hypothetical protein XP_002345876 
LOC100293267          0.007   PREDICTED: hypothetical protein 
LOC100292164          0.007   PREDICTED: hypothetical protein 
LOC100289712          0.007   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.007   PREDICTED: hypothetical protein XP_002342583 
LOC100289081          0.007   PREDICTED: hypothetical protein XP_002342086 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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