Guide to the Human Genome
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Name: LOC100289538 Sequence: fasta or formatted (184aa) NCBI GI: 239751944
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {255aa} PREDICTED: hypothetical protein XP_002344220
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         16           2
 C cysteine            1.6          3           1
 D aspartate           1.1          2           1
 E glutamate           2.2          4           1
 F phenylalanine       1.1          2           1
 G glycine             8.7         16           2
 H histidine           6.0         11           1
 I isoleucine          2.7          5           2
 K lysine              2.2          4           1
 L leucine            20.7         38           4
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            14.1         26           2
 Q glutamine           5.4         10           1
 R arginine            6.0         11           1
 S serine              5.4         10           1
 T threonine           3.8          7           1
 V valine              7.1         13           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292022          1.000   PREDICTED: hypothetical protein XP_002345434 
LOC100289538          0.880   PREDICTED: hypothetical protein XP_002344220 
CIC                   0.028   capicua homolog 
CENPB                 0.026   centromere protein B 
NCOR2                 0.020   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.020   nuclear receptor co-repressor 2 isoform 1 
LOC646396             0.017   PREDICTED: similar to hCG2042704 
LOC100133447          0.017   PREDICTED: similar to hCG2042704, partial 
LOC646396             0.017   PREDICTED: similar to hCG2042704 
LOC100293513          0.014   PREDICTED: hypothetical protein 
LOC100291129          0.014   PREDICTED: hypothetical protein XP_002347815 
LOC100294343          0.014   PREDICTED: hypothetical protein XP_002344111 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 2 
BCORL1                0.014   BCL6 co-repressor-like 1 
LOC100291309          0.014   PREDICTED: hypothetical protein XP_002347389 
LOC100287749          0.014   PREDICTED: hypothetical protein XP_002343252 
PHC1                  0.014   polyhomeotic 1-like 
MUC6                  0.014   mucin 6, gastric 
WNK2                  0.014   WNK lysine deficient protein kinase 2 
PHF12                 0.014   PHD finger protein 12 isoform 1 
PHF12                 0.014   PHD finger protein 12 isoform 2 
LILRB2                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
PXDN                  0.011   peroxidasin 
GRIN3B                0.011   glutamate receptor, ionotropic, N-methyl-D-aspartate...
EIF4ENIF1             0.011   eukaryotic translation initiation factor 4E nuclear i...
KIAA1486              0.011   hypothetical protein LOC57624 
LOC100293817          0.011   PREDICTED: similar to hCG1811893 
MYO16                 0.011   myosin heavy chain Myr 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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