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Search of human proteins with 239757126
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757126 PREDICTED: hypothetical protein [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757126 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|239751639 PREDICTED: hypothetical protein XP_002347942 [Homo ... 377 e-105
gi|239746151 PREDICTED: hypothetical protein XP_002344288 [Homo ... 377 e-105
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.007
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 37 0.012
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.016
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 36 0.016
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.027
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.035
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.035
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.035
gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens] 35 0.046
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 35 0.046
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 34 0.060
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 34 0.060
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 34 0.078
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 34 0.078
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 34 0.078
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 33 0.10
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 33 0.10
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor... 33 0.10
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens] 33 0.13
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 33 0.13
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.13
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 33 0.13
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.17
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17
gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo ... 33 0.17
>gi|239757126 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 377 bits (969), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS
Sbjct: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
Query: 181 S 181
S
Sbjct: 181 S 181
>gi|239751639 PREDICTED: hypothetical protein XP_002347942 [Homo
sapiens]
Length = 181
Score = 377 bits (969), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS
Sbjct: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
Query: 181 S 181
S
Sbjct: 181 S 181
>gi|239746151 PREDICTED: hypothetical protein XP_002344288 [Homo
sapiens]
Length = 181
Score = 377 bits (969), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS
Sbjct: 121 PRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSS 180
Query: 181 S 181
S
Sbjct: 181 S 181
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 38.9 bits (89), Expect = 0.002
Identities = 37/114 (32%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 73 LGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSA-------DCGCAPRVRA 125
LG GPPGS GR R D G P+R + APR A
Sbjct: 271 LGSQPRPENGPPGSHRTASGRGLRR-GDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSA 329
Query: 126 APGRAAGVRAPGHSSRPRTQSAATW-TARVRPERSVARRWRRRASGLPRPSEHR 178
APG G R G S A + T + ++ R RR A+ LPRPS R
Sbjct: 330 APGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRARRSANRLPRPSGPR 383
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.5 bits (88), Expect = 0.003
Identities = 43/124 (34%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 74 GRGCEGPQGPPGS---QGLTGGRW--------TPRFPDRRTRTRSGAA----PARSADCG 118
G G PQ GS G GGR P P R R ++ AA PAR +
Sbjct: 305 GSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE-- 362
Query: 119 CAPRVRAAPG-RAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEH 177
+P R+AP + G RA G + R R + R R RS A RRR PRP+
Sbjct: 363 -SPSPRSAPSSQGRGGRAAGGAGRRRRRRR-----RRRRSRSSASAPRRRGRRRPRPAPP 416
Query: 178 RSSS 181
R SS
Sbjct: 417 RGSS 420
Score = 32.0 bits (71), Expect = 0.30
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
GRG GP PGS+ GG R +R R R PA ++ A R P +
Sbjct: 435 GRGAPGPGPEPGSERGHGGH-GKRAKERPPRAR----PASTSPSPGAHGRRGGPEGKSSS 489
Query: 134 RAPGHSSRPRTQSAATWTARVRPERSVARRWRRR 167
R+PG R +W++ P +S +R +R
Sbjct: 490 RSPGPHPR-------SWSSSRSPSKSRSRSAEKR 516
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.4 bits (85), Expect = 0.007
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 75 RGCEGPQGPPGSQGLTGGRW-TPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
RG + P + + RW R P RR R+RS P S R R+ R
Sbjct: 503 RGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSAR---- 558
Query: 134 RAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRSSS 181
R HS P T+ + R RS +R RR S P+ RS S
Sbjct: 559 RGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRS 606
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 92 GRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGHSSRPRTQSAATWT 151
GR R P RR R+RS R P R+ R+ R P R R+++
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRS---RTPARRGRSRSRTPRRGR 701
Query: 152 ARVRPERSVARRWRRRASGLPRPSEHRSSS 181
+R RS+ RR R + R SSS
Sbjct: 702 SR---SRSLVRRGRSHSRTPQRRGRSGSSS 728
Score = 26.9 bits (58), Expect = 9.6
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 84 PGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGHSSRPR 143
PG Q L + P R+RS P S R+ R P PR
Sbjct: 2654 PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDS-----RSLSYSPVERRRPSPQPSPR 2708
Query: 144 TQ-SAATWTARVRPERSVAR---RWRRRASGLPRPSEHRSS 180
Q S+++ R +R +R RRR + PRP HRSS
Sbjct: 2709 DQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHRSS 2749
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.012
Identities = 52/198 (26%), Positives = 68/198 (34%), Gaps = 32/198 (16%)
Query: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
+G +P +L PAL L G +P L + LL PL +
Sbjct: 33 LGAQPAQAANGDADELLELPAL-LQLPAGCDPCASLRDSRVTPATALL--PLSHRGRAQR 89
Query: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLT-----------GGRWTPRFPDRRTRTRSGA 109
A + E LGRGC G + PP + T R R R +TR G
Sbjct: 90 RSMHAAAAQERSLGRGCLGKE-PPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGGG 148
Query: 110 A--PARSADC--------------GCAPRVRAAPGRAAGVRAPGH-SSRPRTQSAATWTA 152
P R D G PR R AAG ++ G +PR Q A A
Sbjct: 149 GKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQKPAAAGA 208
Query: 153 RVRPERSVARRWRRRASG 170
+ +RRW R+ G
Sbjct: 209 KSGLGDKKSRRWGRKKPG 226
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.2 bits (82), Expect = 0.016
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG QGL G T P R S P R G R G A
Sbjct: 987 GLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG-GKGDRGENGSPGAPGA 1045
Query: 136 PGHSSRP 142
PGH P
Sbjct: 1046 PGHPGPP 1052
Score = 36.2 bits (82), Expect = 0.016
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GPQGP G +G TG R R + AP G + +PG AG R
Sbjct: 1082 RGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAI-GSPG-PAGPR 1139
Query: 135 AP-GHSSRPRTQSAATWTARVRPERSVARRWRRRASGLP 172
P G S P + + P R R + G P
Sbjct: 1140 GPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178
Score = 34.3 bits (77), Expect = 0.060
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAA--PARSADCGCAPRVRAAPGRAAG 132
RG GP G PG +G G R P R GAA P R G P +R PG G
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAPGPAGPR-----GAAGEPGRDGVPG-GPGMRGMPGSPGG 544
Query: 133 VRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRP 174
PG +P + + R P R + G P P
Sbjct: 545 ---PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP 583
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 75 RGCEGPQGPPGSQGL--TGG----RWTPRFPDRRTRTRSGAAPARSADCGC-----APRV 123
+G GP GP G QGL TGG P P + + AP D G P +
Sbjct: 629 KGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688
Query: 124 RAAPGRAAGVRAPG 137
APG G PG
Sbjct: 689 AGAPGLRGGAGPPG 702
Score = 32.0 bits (71), Expect = 0.30
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPR 122
G+G +GP+G PG G+ G P P + S P C P+
Sbjct: 101 GQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQ 149
Score = 32.0 bits (71), Expect = 0.30
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG--------CAPRVRAAP 127
G GP GPPG QG+ G R +P P + P G +P P
Sbjct: 846 GGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPP 905
Query: 128 GRAAGVRAPG 137
G A APG
Sbjct: 906 GPAGNTGAPG 915
Score = 30.8 bits (68), Expect = 0.66
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRT----RSG-----AAPARSADCGCAPRVRAA 126
G G +G PG G+ G P FP + R+G AP + G P A
Sbjct: 237 GRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG-LPGENGA 295
Query: 127 PGRAAGVRAPGHSSRPRTQSAA 148
PG APG RP AA
Sbjct: 296 PGPMGPRGAPGERGRPGLPGAA 317
Score = 30.4 bits (67), Expect = 0.87
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG +G GPPG G G +P + PA S AP R PG
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSP-------GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAG 378
Query: 135 APGHSSRP 142
A G P
Sbjct: 379 AQGPPGPP 386
Score = 30.4 bits (67), Expect = 0.87
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTP 96
G G GPQGPPG G TG + P
Sbjct: 598 GPGGPGPQGPPGKNGETGPQGPP 620
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 76 GCEGPQGPPG---SQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG 132
G G +GPPG + GL GG P P+ + A P P ++ PG G
Sbjct: 678 GAPGERGPPGLAGAPGLRGGAGPPG-PEGG---KGAAGPPGPPGAAGTPGLQGMPGERGG 733
Query: 133 VRAPG 137
+ +PG
Sbjct: 734 LGSPG 738
Score = 29.3 bits (64), Expect = 1.9
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+G PG +G TG FP AP ++ + G R APG
Sbjct: 789 GIAGPRGSPGERGETGPPGPAGFP---------GAPGQNGEPG-GKGERGAPGEKGEGGP 838
Query: 136 PGHSSRP 142
PG + P
Sbjct: 839 PGVAGPP 845
Score = 28.5 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTP 96
G+G GP GPPG+ G G + P
Sbjct: 706 GKGAAGPPGPPGAAGTPGLQGMP 728
Score = 28.5 bits (62), Expect = 3.3
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GP GPPG G G + P +P + G PG A
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG-------PPGPAGFPG 813
Query: 135 APGHSSRP 142
APG + P
Sbjct: 814 APGQNGEP 821
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 79 GPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGH 138
GP GP G++G G +P P + AP A + G AG AP +
Sbjct: 1161 GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYY 1220
Query: 139 SSRP 142
P
Sbjct: 1221 GDEP 1224
Score = 28.1 bits (61), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 76 GCEGPQGPPGSQGLTGGR 93
G +GP GPPG G GG+
Sbjct: 378 GAQGPPGPPGINGSPGGK 395
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTP 96
G+G GP G PG+ GL G R P
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPP 416
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 74 GRGCEGPQGPPGSQGLTG 91
G G +G GPPGSQG +G
Sbjct: 544 GPGSDGKPGPPGSQGESG 561
Score = 27.7 bits (60), Expect = 5.6
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 74 GRGCEGPQGPPGSQGLTG--GRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
G+G G G PG+ G G G P P ++ R + PA A APG A
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA---------GAPGPAG 1080
Query: 132 GVRAPG 137
APG
Sbjct: 1081 SRGAPG 1086
Score = 27.3 bits (59), Expect = 7.3
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+G PG QG+ G P A S + G P + PG A
Sbjct: 963 GMPGPRGSPGPQGVKGESGKP------------GANGLSGERG-PPGPQGLPGLAGTAGE 1009
Query: 136 PGHSSRP 142
PG P
Sbjct: 1010 PGRDGNP 1016
Score = 26.9 bits (58), Expect = 9.6
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG G G P P P ++ G P A G +
Sbjct: 171 GYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSG-PPGPPGAIGPSGPAGK 229
Query: 136 PGHSSRP 142
G S RP
Sbjct: 230 DGESGRP 236
>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.016
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
+G +P +L PAL L G +P L + LL PL +
Sbjct: 33 LGAQPAQAANGDADELLELPAL-LQLPAGCDPCASLRDSRVTPATALL--PLSHRGRAQR 89
Query: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
A + E LGRGC G + PP + T R PR + +RSG+ RS
Sbjct: 90 RSMHAAAAQERSLGRGCLGKE-PPNRESWT--RSDPRHCISQDASRSGSRVCRS-----R 141
Query: 121 PRVRAAPG--------RAAGVR-APGHSSRPRTQSAATWTARVRPER 158
P+ R + G +AA V+ G S +P Q AA A+ R R
Sbjct: 142 PQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGR 188
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 35.4 bits (80), Expect = 0.027
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 74 GRGCEGPQG------PPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAP 127
GRG GP G PPG GL G + +P P + T AP R G R +P
Sbjct: 2216 GRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASG-KDGDRGSP 2274
Query: 128 GRAAGVRAPG 137
G PG
Sbjct: 2275 GVPGSPGLPG 2284
Score = 34.3 bits (77), Expect = 0.060
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTP---RFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG 132
G EGP G PG +GL G R P P R P+ A P + PGRA G
Sbjct: 1991 GKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGG 2050
Query: 133 VRAPGHSSRP 142
V G + RP
Sbjct: 2051 V---GEAGRP 2057
Score = 32.0 bits (71), Expect = 0.30
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 76 GCEGPQGPPGS------QGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGR 129
G GPQGPPGS +G G P P R + AP G P R PG
Sbjct: 1281 GAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPG-LPGPRGDPGE 1339
Query: 130 AAGVRAP 136
G R P
Sbjct: 1340 -RGPRGP 1345
Score = 30.4 bits (67), Expect = 0.87
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP+GPPG+ G G R P P + P A P V PG
Sbjct: 1465 GEQGPRGPPGAIGPKGDRGFPG-PLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 136 PGHSSR 141
PG + R
Sbjct: 1524 PGPTGR 1529
Score = 30.4 bits (67), Expect = 0.87
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
+G G QGPPG +G G FP R P G A R PG +
Sbjct: 1981 KGDSGEQGPPGKEGPIG------FPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAG 2034
Query: 135 APGHSSRP 142
PG P
Sbjct: 2035 EPGKPGIP 2042
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+G PG +G G + P P + P R D G P G R
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPG--------PSGPPGPRG 1380
Query: 136 PGHSSRPRTQSAATWTA 152
P PR TA
Sbjct: 1381 PLGDPGPRGPPGLPGTA 1397
Score = 28.9 bits (63), Expect = 2.5
Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP+GPPG G G + P P A + P A P A GV+
Sbjct: 1516 GAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGP---AGPRGATGVQG 1572
Query: 136 ------------PGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRP 174
PG P + T R P + G P P
Sbjct: 1573 ERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGP 1623
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPG 128
RG GP+G PG+ G G P P R+ P G P R PG
Sbjct: 1340 RGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLG-DPGPRGPPG 1392
Score = 28.1 bits (61), Expect = 4.3
Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 13/72 (18%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G GPPG GL G RT P SA A R PG +
Sbjct: 1263 GLRGQVGPPGDPGLPG----------RTGAPGPQGPPGSA---TAKGERGFPGADGRPGS 1309
Query: 136 PGHSSRPRTQSA 147
PG + P T A
Sbjct: 1310 PGRAGNPGTPGA 1321
Score = 28.1 bits (61), Expect = 4.3
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG EGP+GP G GL G P R P D P VR G
Sbjct: 1724 RGQEGPRGPKGDPGLPGA------PGERGIEGFRGPPGPQGD----PGVRGPAGEKGDRG 1773
Query: 135 APGHSSR 141
PG R
Sbjct: 1774 PPGLDGR 1780
Score = 27.7 bits (60), Expect = 5.6
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTP---RFPDRRTRTRSGAAPARSADCGCAPR--------- 122
RG +G GP G QG G R TP FP S P G PR
Sbjct: 2685 RGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVG--PRGPEGLQGQK 2742
Query: 123 -VRAAPGRAAGVRAPGHSSRP 142
R PG V APG P
Sbjct: 2743 GERGPPGERV-VGAPGVPGAP 2762
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTP 96
RG GPQG PG+ G+ G +P
Sbjct: 2580 RGLLGPQGQPGAAGIPGDPGSP 2601
Score = 26.9 bits (58), Expect = 9.6
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GP G PG G TG P T P G +PGRA
Sbjct: 1265 RGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPG-------SPGRAGNPG 1317
Query: 135 APG 137
PG
Sbjct: 1318 TPG 1320
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.0 bits (79), Expect = 0.035
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG QGL G R P +R P S + P + APG A+G R
Sbjct: 963 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE----PGKQGAPG-ASGDRG 1017
Query: 136 P 136
P
Sbjct: 1018 P 1018
Score = 34.3 bits (77), Expect = 0.060
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGR--AAG 132
RG G +G PG+QGL G R P P + + PA P ++ PG AAG
Sbjct: 701 RGFPGERGSPGAQGLQGPRGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAG 759
Query: 133 VRAP 136
+ P
Sbjct: 760 IAGP 763
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPR----VRAAPGRAA 131
G GP GPPG G GG P P + +G AR + PR +PG A
Sbjct: 348 GQPGPAGPPGPVGPAGGPGFPGAPG--AKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 405
Query: 132 GVRAPGHSSRPRTQSAA 148
PG P + +A
Sbjct: 406 ASGNPGTDGIPGAKGSA 422
Score = 32.3 bits (72), Expect = 0.23
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
GRG GP GPPG G G + P + AP + G PG A
Sbjct: 784 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-------PPGPAGFA 836
Query: 134 RAPGHSSRP 142
PG +P
Sbjct: 837 GPPGADGQP 845
Score = 32.0 bits (71), Expect = 0.30
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+G PG +G TG +GAA AR D P PG
Sbjct: 321 GPMGPRGLPGERGRTG--------------PAGAAGARGND--GQPGPAGPPGPVGPAGG 364
Query: 136 PGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPS 175
PG P + A T PE + R G P P+
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 404
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGR---- 129
G +G GPPG QG G FP + + P ++ + G AP +R PG+
Sbjct: 582 GEDGRPGPPGPQGARGQPGVMGFPGPK---GANGEPGKAGEKGLPGAPGLRGLPGKDGET 638
Query: 130 -AAGVRAPGHSSRPRTQSAA 148
AAG P + R + A
Sbjct: 639 GAAGPPGPAGPAGERGEQGA 658
Score = 30.4 bits (67), Expect = 0.87
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GP G GLTG P R + P R G V+ G V A
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGE---PGREGSPGADGPPGRDGAAG----VKGDRGETGAVGA 1066
Query: 136 PGHSSRPRTQSAATWTAR 153
PG P + A T +
Sbjct: 1067 PGAPGPPGSPGPAGPTGK 1084
Score = 29.3 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG QG G TP P + + G AP V+ G +
Sbjct: 261 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG-APGVKGESGSPGENGS 319
Query: 136 PG 137
PG
Sbjct: 320 PG 321
Score = 29.3 bits (64), Expect = 1.9
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG +G G R P + G A + A P A P A G
Sbjct: 498 GGVGPIGPPGERGAPGNRGFP--------GQDGLAGPKGAPGERGPSGLAGPKGANG--D 547
Query: 136 PGHSSRPRTQSAATWTAR 153
PG P A T R
Sbjct: 548 PGRPGEPGLPGARGLTGR 565
Score = 28.9 bits (63), Expect = 2.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 76 GCEGPQGPPGSQGLTG 91
G GP+GPPG QG TG
Sbjct: 432 GFPGPRGPPGPQGATG 447
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 79 GPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGH 138
GP+GPPG QG G PR DR + GA R D PG PG
Sbjct: 117 GPKGPPGPQG-PAGEQGPR-GDRGDKGEKGAPGPRGRD--------GEPGTPGNPGPPGP 166
Query: 139 SSRP 142
P
Sbjct: 167 PGPP 170
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP G PG QG TG +G AR A P PG A V
Sbjct: 864 GPQGPSGAPGPQGPTG--------------VTGPKGARGAQ--GPPGATGFPGAAGRVGP 907
Query: 136 PGHSSRP 142
PG + P
Sbjct: 908 PGSNGNP 914
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.0 bits (79), Expect = 0.035
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG QGL G R P +R P S + P + APG A+G R
Sbjct: 894 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE----PGKQGAPG-ASGDRG 948
Query: 136 P 136
P
Sbjct: 949 P 949
Score = 34.3 bits (77), Expect = 0.060
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGR--AAG 132
RG G +G PG+QGL G R P P + + PA P ++ PG AAG
Sbjct: 632 RGFPGERGSPGAQGLQGPRGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERGAAG 690
Query: 133 VRAP 136
+ P
Sbjct: 691 IAGP 694
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPR----VRAAPGRAA 131
G GP GPPG G GG P P + +G AR + PR +PG A
Sbjct: 279 GQPGPAGPPGPVGPAGGPGFPGAPG--AKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 336
Query: 132 GVRAPGHSSRPRTQSAA 148
PG P + +A
Sbjct: 337 ASGNPGTDGIPGAKGSA 353
Score = 32.3 bits (72), Expect = 0.23
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
GRG GP GPPG G G + P + AP + G PG A
Sbjct: 715 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-------PPGPAGFA 767
Query: 134 RAPGHSSRP 142
PG +P
Sbjct: 768 GPPGADGQP 776
Score = 32.0 bits (71), Expect = 0.30
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+G PG +G TG +GAA AR D P PG
Sbjct: 252 GPMGPRGLPGERGRTG--------------PAGAAGARGND--GQPGPAGPPGPVGPAGG 295
Query: 136 PGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPS 175
PG P + A T PE + R G P P+
Sbjct: 296 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 335
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGR---- 129
G +G GPPG QG G FP + + P ++ + G AP +R PG+
Sbjct: 513 GEDGRPGPPGPQGARGQPGVMGFPGPK---GANGEPGKAGEKGLPGAPGLRGLPGKDGET 569
Query: 130 -AAGVRAPGHSSRPRTQSAA 148
AAG P + R + A
Sbjct: 570 GAAGPPGPAGPAGERGEQGA 589
Score = 30.4 bits (67), Expect = 0.87
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GP G GLTG P R + P R G V+ G V A
Sbjct: 945 GDRGPPGPVGPPGLTGPAGE---PGREGSPGADGPPGRDGAAG----VKGDRGETGAVGA 997
Query: 136 PGHSSRPRTQSAATWTAR 153
PG P + A T +
Sbjct: 998 PGAPGPPGSPGPAGPTGK 1015
Score = 29.3 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG QG G TP P + + G AP V+ G +
Sbjct: 192 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG-APGVKGESGSPGENGS 250
Query: 136 PG 137
PG
Sbjct: 251 PG 252
Score = 29.3 bits (64), Expect = 1.9
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG +G G R P + G A + A P A P A G
Sbjct: 429 GGVGPIGPPGERGAPGNRGFP--------GQDGLAGPKGAPGERGPSGLAGPKGANG--D 478
Query: 136 PGHSSRPRTQSAATWTAR 153
PG P A T R
Sbjct: 479 PGRPGEPGLPGARGLTGR 496
Score = 28.9 bits (63), Expect = 2.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 76 GCEGPQGPPGSQGLTG 91
G GP+GPPG QG TG
Sbjct: 363 GFPGPRGPPGPQGATG 378
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 79 GPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGH 138
GP+GPPG QG G PR DR + GA R D PG PG
Sbjct: 48 GPKGPPGPQG-PAGEQGPR-GDRGDKGEKGAPGPRGRD--------GEPGTPGNPGPPGP 97
Query: 139 SSRP 142
P
Sbjct: 98 PGPP 101
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP G PG QG TG +G AR A P PG A V
Sbjct: 795 GPQGPSGAPGPQGPTG--------------VTGPKGARGAQ--GPPGATGFPGAAGRVGP 838
Query: 136 PGHSSRP 142
PG + P
Sbjct: 839 PGSNGNP 845
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRT---RSGAAPARSADCGCAPRVRAAPGRAAG 132
G GPQGP G G G + P P R+ T P AD PR+ PG A G
Sbjct: 1328 GFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPG-APG 1386
Query: 133 VRAP 136
+R P
Sbjct: 1387 MRGP 1390
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
G C G GPPG QG G P + G R +APG+
Sbjct: 397 GEACAGMIGPPGPQGFPG------------------LPGLPGEAGIPGRPDSAPGKPGKP 438
Query: 134 RAPGHSSRPRTQ 145
+PG P Q
Sbjct: 439 GSPGLPGAPGLQ 450
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRR 102
G GP+G PG G G R P FP R
Sbjct: 128 GPPGPRGKPGMSGHNGSRGDPGFPGGR 154
Score = 28.5 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARS 114
G GP GPPGS GL G P P + S P S
Sbjct: 1024 GPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFS 1062
Score = 28.5 bits (62), Expect = 3.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG +GP GPPGS G G +G AP D G P + PG
Sbjct: 1226 RGKKGPPGPPGSSGPPG-----------PAGATGRAPKDIPDPG-PPGDQGPPGPDGPRG 1273
Query: 135 APGHSSRP 142
APG P
Sbjct: 1274 APGPPGLP 1281
Score = 28.1 bits (61), Expect = 4.3
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG-----CAPRVRAAPGRA 130
G +G GPPG +G G P FP R + + P + G P R G
Sbjct: 894 GDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAK 953
Query: 131 AGVRAPG 137
+ PG
Sbjct: 954 GAIGPPG 960
Score = 28.1 bits (61), Expect = 4.3
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV-- 133
GC+G G G G G + FP P R G P R PG A V
Sbjct: 1316 GCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTG-LPGPRGEPGPPADVDD 1374
Query: 134 --RAPGHSSRP 142
R PG P
Sbjct: 1375 CPRIPGLPGAP 1385
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 79 GPQGPPGSQGLTGGRWTPRFP 99
GP GPPGS G+ G + P P
Sbjct: 742 GPPGPPGSPGVNGQKGIPGDP 762
Score = 27.7 bits (60), Expect = 5.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFP 99
+G GP GPPG G TG R FP
Sbjct: 1020 KGQPGPPGPPGPPGSTGLRGFIGFP 1044
Score = 27.7 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPG 128
GC G G G QGL G + P R S P D G P +R PG
Sbjct: 1094 GCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHG-MPGLRGQPG 1145
Score = 27.3 bits (59), Expect = 7.3
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPD-RRTRTRSGAA--------PARSADCGC--APRVR 124
G +GP+G PG G G P F + + R G A P S + G P
Sbjct: 780 GIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQP 839
Query: 125 AAPGRAAGVRAPGHSSRP 142
PG APG +P
Sbjct: 840 GLPGYPGSPGAPGGKGQP 857
Score = 26.9 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTP 96
+G GP GPPG QG G P
Sbjct: 61 KGSRGPPGPPGPQGPIGPLGAP 82
>gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens]
Length = 299
Score = 34.7 bits (78), Expect = 0.046
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 21/105 (20%)
Query: 16 LFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEELLDPAVLSLELCLG- 74
L+ P+L LLLGGP L +Q + P G EL V+ L C G
Sbjct: 4 LWILPSLWLLLLGGPA--------CLKTQ----EHPSCPGP--RELEASKVVLLPSCPGA 49
Query: 75 ------RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPAR 113
+G GPQGPPG G G + P P R + G R
Sbjct: 50 PGSPGEKGAPGPQGPPGPPGKMGPKGEPGDPVNLLRCQEGPRNCR 94
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 34.7 bits (78), Expect = 0.046
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 83 PPGSQGLTGGRWTPRF-PDRRTRTRSGAAPARSADCGCAPRVRAAPG-RAAGVRAPGHSS 140
PPG +G GGR R+ P RR +P A R R AP R AG R +
Sbjct: 85 PPGPEGWAGGRKLRRWLPPRRFSNFCCRSPC--AQTAVRRRRRRAPSPRGAGWREGAGAG 142
Query: 141 R--PRTQSAATWTARV--RPERSVARRWRRRASGLPR 173
R P T + W A P+R RR+ R+ PR
Sbjct: 143 RGTPATMAGGEWAAEPLHLPQRGRRRRFTCRSGRPPR 179
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 34.3 bits (77), Expect = 0.060
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 83 PPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRAPGHSSRP 142
PP +G GGR + P + AAPA P PGRA G S P
Sbjct: 183 PPRQEGSFGGRPKSQPP----LPQETAAPAPQPGPTAPPARVREPGRAEGA-----SREP 233
Query: 143 RTQSAATWTARVRPERSVARRWRRRASGLPRPSEH 177
R +S A +++R R RA+G P P H
Sbjct: 234 RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFH 268
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 34.3 bits (77), Expect = 0.060
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG +G G R P FP + AP P R PG+
Sbjct: 1048 GPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGN-------PGERGPPGK------ 1094
Query: 136 PGHSS 140
PG SS
Sbjct: 1095 PGLSS 1099
Score = 32.3 bits (72), Expect = 0.23
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGR 129
G +GP GPPG++G G P AP S G AP +R PG+
Sbjct: 892 GPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGK 947
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPGS G G R TP R GAA + P R PG A G+
Sbjct: 925 GAPGPSGPPGSVGAPGLRGTPGKDGE--RGEKGAAGEEGSPGPVGP--RGDPG-APGLPG 979
Query: 136 P 136
P
Sbjct: 980 P 980
Score = 28.5 bits (62), Expect = 3.3
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSG--AAPARSADCGCA-PRVRAAPGRAAG 132
G EGP GP G +G G + P P R G P + + G A + PG
Sbjct: 1527 GLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGE 1586
Query: 133 VRAPGHSSRP 142
GH P
Sbjct: 1587 TGPAGHPGLP 1596
Score = 27.3 bits (59), Expect = 7.3
Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 23/90 (25%)
Query: 75 RGCEGPQGPPGSQGLTGGRWT--PRFPDRRTRTRSGAAPARSADCGCAPR---------- 122
+G GP GPPG G T +T PR P + P + G R
Sbjct: 839 KGEAGPAGPPGLPGTT-SLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPT 897
Query: 123 ----------VRAAPGRAAGVRAPGHSSRP 142
APG A APGH P
Sbjct: 898 GPPGAKGQEGAHGAPGAAGNPGAPGHVGAP 927
Score = 27.3 bits (59), Expect = 7.3
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGA--------APARSADCG-CAPR---- 122
G EG +GPPG +G TG P R SGA P + D G P+
Sbjct: 1267 GPEGARGPPGFKGHTGDSGAP-----GPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQG 1321
Query: 123 VRAAPGRAAGVRAPG 137
R PG+ +PG
Sbjct: 1322 PRGPPGKNGSPGSPG 1336
Score = 26.9 bits (58), Expect = 9.6
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRR----TRTRSG-----AAPARSADCGCAPRVRAA 126
G GPQGPPG G G P R TR G P + D G + R
Sbjct: 566 GMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTG--QQGRPG 623
Query: 127 PGRAAG 132
P AG
Sbjct: 624 PSGVAG 629
Score = 26.9 bits (58), Expect = 9.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG 118
RG +G GPPG GL G + P P G +P + G
Sbjct: 695 RGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIG 738
Score = 26.9 bits (58), Expect = 9.6
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTP---RFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
+G +GP+GPPG G G P P ++ +P G R PG
Sbjct: 1317 QGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLG----PRGPPGEPG 1372
Query: 132 GVRAPGHSSRP 142
PG P
Sbjct: 1373 EKGVPGKEGVP 1383
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 33.9 bits (76), Expect = 0.078
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GP GPPGSQG G R P R P PG+
Sbjct: 128 RGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEP-------------GVPGQPGAPG 174
Query: 135 APGHSSRP 142
PGH S P
Sbjct: 175 PPGHPSHP 182
Score = 33.5 bits (75), Expect = 0.10
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG G GP GSQG G P P R T + P V+ G+ +
Sbjct: 545 RGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGN-------------PGVQGPEGKLGPLG 591
Query: 135 APGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRP 174
APG RP P S+ R + + GLP P
Sbjct: 592 APGEDGRP------------GPPGSIGIRGQPGSMGLPGP 619
Score = 32.3 bits (72), Expect = 0.23
Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 75 RGCEGPQGPPGSQGLTG--GRWTPRFPDRRTRTRSGAAPARS--ADCGCA--PRVRAAPG 128
+G GP GPPGS G G G P D T R GA R D G A P + APG
Sbjct: 1028 KGPPGPVGPPGSNGPVGEPGPEGPAGND-GTPGRDGAVGERGDRGDPGPAGLPGSQGAPG 1086
Query: 129 RAAGVRAPGHSSR 141
V APG + +
Sbjct: 1087 TPGPVGAPGDAGQ 1099
Score = 31.6 bits (70), Expect = 0.39
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +G GPPGS G+ G + P + + P + + G P R APG+ V
Sbjct: 594 GEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAG-VPGQRGAPGKDGEVGP 652
Query: 136 PGHSSRP 142
G P
Sbjct: 653 SGPVGPP 659
Score = 31.6 bits (70), Expect = 0.39
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GP G GL GGR T P + P + G P APG A +
Sbjct: 882 GSPGPHGPNGVPGLKGGRGTQGPPG------ATGFPGSAGRVG-PPGPAGAPGPAGPLGE 934
Query: 136 PGHSSRP 142
PG P
Sbjct: 935 PGKEGPP 941
Score = 30.4 bits (67), Expect = 0.87
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG G TG R P +R P + G + P A G +
Sbjct: 975 GQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPG-----KVGPTGATGDKG 1029
Query: 136 P 136
P
Sbjct: 1030 P 1030
Score = 28.9 bits (63), Expect = 2.5
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+GP G +G TG P + P G +P PG A +
Sbjct: 393 GARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTG-SPGTSGPPGSAGPPGS 451
Query: 136 PG 137
PG
Sbjct: 452 PG 453
Score = 28.9 bits (63), Expect = 2.5
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP GPPG +G G R P AP G P A G R
Sbjct: 489 GIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDG--LPGPKGAQGERG 546
Query: 136 PGHSSRPR 143
P SS P+
Sbjct: 547 PVGSSGPK 554
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTP 96
RG GP GPPG G TG + P
Sbjct: 797 RGLPGPLGPPGPAGPTGEKGEP 818
Score = 26.9 bits (58), Expect = 9.6
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 75 RGCEGPQGPPGSQGLTG--GRWTPRFPDRRT-RTRSGAAPARSADCGCAPRVRAAPGRAA 131
+G GP GP G QG G G + PR P + P G P VR + G A
Sbjct: 1151 QGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIG-PPGVRGSVGEAG 1209
Query: 132 GVRAPGHSSRP 142
PG P
Sbjct: 1210 PEGPPGEPGPP 1220
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.9 bits (76), Expect = 0.078
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G +GP GP G QGL G + P P R+G P + G P V +PG
Sbjct: 466 GLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAG-EPGTAGPTG-PPGVPGSPGITGPPGP 523
Query: 136 PGHSSRPRTQSA 147
PG P A
Sbjct: 524 PGPPGPPGAPGA 535
Score = 28.5 bits (62), Expect = 3.3
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP-DRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
G +G GPPG QG G + P P DR + +G P + APG+
Sbjct: 176 GAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVG---------QPGLPGAPGQGGAPG 226
Query: 135 APG 137
PG
Sbjct: 227 PPG 229
Score = 28.5 bits (62), Expect = 3.3
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPD-RRTRTRSGAA--PARSADCGCAPRVRAAPGRAAG 132
G G +GPPG +G G P P R + SG A P + G P PG
Sbjct: 367 GLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERG-LPGAHGPPGPTGP 425
Query: 133 VRAPGHSSRP 142
PG + RP
Sbjct: 426 KGEPGFTGRP 435
Score = 27.3 bits (59), Expect = 7.3
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
RG G G PG QG G P P S P R G P+ A PG GV
Sbjct: 339 RGEPGEDGEPGEQGPQGLGGPPGLPG------SAGLPGRRGPPG--PKGEAGPGGPPGV 389
Score = 26.9 bits (58), Expect = 9.6
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GPQGP G++G G R P G P D G A PG
Sbjct: 287 GLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPG-LPGPKGDRGPA----GVPGLLGDRGE 341
Query: 136 PGHSSRPRTQ 145
PG P Q
Sbjct: 342 PGEDGEPGEQ 351
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 33.9 bits (76), Expect = 0.078
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
+G GPQGPPGS+G TG P+ P + + A P D R R PG V
Sbjct: 141 QGDSGPQGPPGSEGFTGPP-GPQGP-KGQKGEPYALPKEERD-----RYRGEPGEPGLVG 193
Query: 135 APGHSSRP 142
G RP
Sbjct: 194 FQGPPGRP 201
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG +G QGP G +G G P P PA S A R PG
Sbjct: 322 RGLDGYQGPDGPRGPKGEAGDPGPP---------GLPAYSPHPSLAKGARGDPGFPGAQG 372
Query: 135 APGHSSRP 142
PG P
Sbjct: 373 EPGSQGEP 380
Score = 28.1 bits (61), Expect = 4.3
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC-----------APRV 123
+G G +GPPGS GL G FP + AP G P
Sbjct: 1250 QGAPGERGPPGSPGLQG------FPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGS 1303
Query: 124 RAAPGRAAGVRAPGHSSRPRTQSAA 148
A PG PG P T+ A
Sbjct: 1304 AALPGSKGDTGNPGAPGTPGTKGWA 1328
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTP 96
G G +GP G PG G+ G + TP
Sbjct: 593 GDGIKGPPGDPGYPGIPGTKGTP 615
Score = 27.3 bits (59), Expect = 7.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 76 GCEGPQGPPGSQGLTG 91
G GP GPPG +GL G
Sbjct: 759 GLPGPDGPPGERGLPG 774
Score = 26.9 bits (58), Expect = 9.6
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG--CAPRVRAAPGRAA 131
GRG GP GP G G G + P R+ AP + G A V PG A
Sbjct: 59 GRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGFPG-AD 117
Query: 132 GVRAPGH 138
G+ PGH
Sbjct: 118 GI--PGH 122
Score = 26.9 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 79 GPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPR-----VRAAPGRAAGV 133
GPQGPPG G G P + R A P D G APGR
Sbjct: 1420 GPQGPPGEPGFRG---APGKAGPQGRGGVSAVPGFRGDEGPIGHQGPIGQEGAPGRPGSP 1476
Query: 134 RAPGHSSR 141
PG R
Sbjct: 1477 GLPGMPGR 1484
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 33.5 bits (75), Expect = 0.10
Identities = 37/117 (31%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 76 GCEGPQGPPGSQGLTGGRW----------------TPRFPDRRT--RTRSGAAPARSADC 117
G + P P G +G GR PR P R R R A P S
Sbjct: 121 GVDLPATPGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPA 180
Query: 118 GC--APRVRAAPGRAAG----VRAPGHSSRPRTQSAATWTARVRPERSVARRWRRRA 168
G P RAAPGR G +RAPG R R V P R+W+R A
Sbjct: 181 GRPHGPAGRAAPGRRPGCTAQLRAPGRRGRQR--------LLVHPGGGGRRQWQRLA 229
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 33.5 bits (75), Expect = 0.10
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 80 PQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG-VRAPGH 138
P+ P Q L+G P PDR +R PA + A R+A A G + P
Sbjct: 19 PEPPRYLQSLSGPELPPPPPDRSSRL---CVPAPLSTAPGAREGRSARRAARGNLEPPPR 75
Query: 139 SSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRS 179
+SRP RP R ++ RR G PRP + RS
Sbjct: 76 ASRP-----------ARPLRPGLQQRLRRRPGAPRPRDVRS 105
>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
[Homo sapiens]
Length = 418
Score = 33.5 bits (75), Expect = 0.10
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 80 PQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG-VRAPGH 138
P+ P Q L+G P PDR +R PA + A R+A A G + P
Sbjct: 19 PEPPRYLQSLSGPELPPPPPDRSSRL---CVPAPLSTAPGAREGRSARRAARGNLEPPPR 75
Query: 139 SSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPSEHRS 179
+SRP RP R ++ RR G PRP + RS
Sbjct: 76 ASRP-----------ARPLRPGLQQRLRRRPGAPRPRDVRS 105
>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
Length = 288
Score = 33.1 bits (74), Expect = 0.13
Identities = 38/119 (31%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 16 LFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEELLDPAVLSLELCLG- 74
L+ P+L LLLGGP L +Q + P G EL V+ L C G
Sbjct: 4 LWILPSLWLLLLGGPA--------CLKTQ----EHPSCPGP--RELEASKVVLLPSCPGA 49
Query: 75 ------RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAP 127
+G GPQGPPG G G + P + R GA + C P RA P
Sbjct: 50 PGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHL-CLPEGRALP 107
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 72 CLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
C+G G GP G PG GL G + FP ++ A G P APG
Sbjct: 484 CIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPG 542
Query: 132 GVRAPG 137
PG
Sbjct: 543 SKGEPG 548
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPGS GL G FP
Sbjct: 869 GAPGPIGPPGSPGLPGKAGASGFP 892
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/75 (32%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGRAAGV 133
G +G GP G QGL G P P R A R D G P R G
Sbjct: 1391 GLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPD 1450
Query: 134 RAPGHSSRPRTQSAA 148
G P T S A
Sbjct: 1451 GLQGPPGPPGTSSVA 1465
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
+G GPQGPPG G TG + P +G + G P + PG
Sbjct: 1251 KGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPG-QPGLPGLPGLKGDQG 1309
Query: 135 APGHSSRP 142
PG P
Sbjct: 1310 PPGLQGNP 1317
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG--CAPRVRAAPGRAAGV 133
G G GPPG +G++G P P G P + G P PG A
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 134 RAPG 137
PG
Sbjct: 1182 GEPG 1185
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
G G GP G G QG+ G P P + P ++ P + PGR V
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPK------GDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 134 RAPGHSSRP 142
PG P
Sbjct: 678 GLPGDPGLP 686
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFP 99
+G +G GPPG +G+ G P FP
Sbjct: 77 KGDDGIPGPPGPKGIRGPPGLPGFP 101
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 75 RGCEGPQGPPGSQGLTG 91
RG GP GPPG GL G
Sbjct: 777 RGFPGPPGPPGRTGLDG 793
Score = 26.9 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+GPPG +G G P P G R P + PG
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPP--------GPKGIRG-----PPGLPGFPGTPGLPGM 109
Query: 136 PGHSSRPRTQ 145
PGH P Q
Sbjct: 110 PGHDGAPGPQ 119
Score = 26.9 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPG GL G P P
Sbjct: 189 GIPGPIGPPGPPGLMGPPGPPGLP 212
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 72 CLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
C+G G GP G PG GL G + FP ++ A G P APG
Sbjct: 484 CIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPG 542
Query: 132 GVRAPG 137
PG
Sbjct: 543 SKGEPG 548
Score = 31.6 bits (70), Expect = 0.39
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
+G GPQGPPG GL G P P +G + G P + PG
Sbjct: 1251 KGNPGPQGPPGRPGLPGPEGPPGLPG------NGGIKGEKGNPG-QPGLPGLPGLKGDQG 1303
Query: 135 APGHSSRP 142
PG P
Sbjct: 1304 PPGLQGNP 1311
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPGS GL G FP
Sbjct: 869 GAPGPIGPPGSPGLPGKAGASGFP 892
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/75 (32%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGRAAGV 133
G +G GP G QGL G P P R A R D G P R G
Sbjct: 1385 GLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPD 1444
Query: 134 RAPGHSSRPRTQSAA 148
G P T S A
Sbjct: 1445 GLQGPPGPPGTSSVA 1459
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG--CAPRVRAAPGRAAGV 133
G G GPPG +G++G P P G P + G P PG A
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 134 RAPG 137
PG
Sbjct: 1182 GEPG 1185
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
G G GP G G QG+ G P P + P ++ P + PGR V
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPK------GDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 134 RAPGHSSRP 142
PG P
Sbjct: 678 GLPGDPGLP 686
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFP 99
+G +G GPPG +G+ G P FP
Sbjct: 77 KGDDGIPGPPGPKGIRGPPGLPGFP 101
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 75 RGCEGPQGPPGSQGLTG 91
RG GP GPPG GL G
Sbjct: 777 RGFPGPPGPPGRTGLDG 793
Score = 26.9 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+GPPG +G G P P G R P + PG
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPP--------GPKGIRG-----PPGLPGFPGTPGLPGM 109
Query: 136 PGHSSRPRTQ 145
PGH P Q
Sbjct: 110 PGHDGAPGPQ 119
Score = 26.9 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPG GL G P P
Sbjct: 189 GIPGPIGPPGPPGLMGPPGPPGLP 212
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 72 CLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
C+G G GP G PG GL G + FP ++ A G P APG
Sbjct: 484 CIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPG 542
Query: 132 GVRAPG 137
PG
Sbjct: 543 SKGEPG 548
Score = 29.3 bits (64), Expect = 1.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPGS GL G FP
Sbjct: 869 GAPGPIGPPGSPGLPGKAGASGFP 892
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/75 (32%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC--APRVRAAPGRAAGV 133
G +G GP G QGL G P P R A R D G P R G
Sbjct: 1388 GLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPD 1447
Query: 134 RAPGHSSRPRTQSAA 148
G P T S A
Sbjct: 1448 GLQGPPGPPGTSSVA 1462
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG--CAPRVRAAPGRAAGV 133
G G GPPG +G++G P P G P + G P PG A
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 134 RAPG 137
PG
Sbjct: 1182 GEPG 1185
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 75 RGCEGPQGPPGS---QGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
+G GPQGPPG QGL G P P +G + G P + PG
Sbjct: 1251 KGNPGPQGPPGRPGFQGLPGPEGPPGLPG------NGGIKGEKGNPG-QPGLPGLPGLKG 1303
Query: 132 GVRAPGHSSRP 142
PG P
Sbjct: 1304 DQGPPGLQGNP 1314
Score = 28.1 bits (61), Expect = 4.3
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGV 133
G G GP G G QG+ G P P + P ++ P + PGR V
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPK------GDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 134 RAPGHSSRP 142
PG P
Sbjct: 678 GLPGDPGLP 686
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFP 99
+G +G GPPG +G+ G P FP
Sbjct: 77 KGDDGIPGPPGPKGIRGPPGLPGFP 101
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 75 RGCEGPQGPPGSQGLTG 91
RG GP GPPG GL G
Sbjct: 777 RGFPGPPGPPGRTGLDG 793
Score = 26.9 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP+GPPG +G G P P G R P + PG
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPP--------GPKGIRG-----PPGLPGFPGTPGLPGM 109
Query: 136 PGHSSRPRTQ 145
PGH P Q
Sbjct: 110 PGHDGAPGPQ 119
Score = 26.9 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFP 99
G GP GPPG GL G P P
Sbjct: 189 GIPGPIGPPGPPGLMGPPGPPGLP 212
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC-----APRVRAAPGR 129
+G GPQGP GS+G G R P P P G AP + APG
Sbjct: 352 KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG- 410
Query: 130 AAGVRAPGHSSRP 142
G R P P
Sbjct: 411 FPGARGPSGPQGP 423
Score = 31.6 bits (70), Expect = 0.39
Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GP GP GS G G P + T S +P G PG A
Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG-------PPGPAGQDG 563
Query: 135 APGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRP 174
PG P + A P+ + + G+P P
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603
Score = 31.2 bits (69), Expect = 0.51
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA--------PRVRAAP 127
G G +GPPG QG G T P + D G A P AP
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298
Query: 128 GRAAGVRAPGHSSRP 142
G+ PG RP
Sbjct: 299 GQMGPRGLPGERGRP 313
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 76 GCEGPQGPPGS---QGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG 132
G +GP G PG+ QG+ G R P +R P S + G + P A+G
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG-----KQGPSGASG 992
Query: 133 VRAP 136
R P
Sbjct: 993 ERGP 996
Score = 29.6 bits (65), Expect = 1.5
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPR----FPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAA 131
G GP GPPG GL GG + P+ + ++ T S P + P APG
Sbjct: 142 GPPGPPGPPGPPGL-GGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG 200
Query: 132 GVRAPGHSSRP 142
PG P
Sbjct: 201 FQGPPGEPGEP 211
Score = 29.6 bits (65), Expect = 1.5
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 18/72 (25%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPR----VRAAPGRA 130
RG GP G PG G GG + FP AD P+ R +PG A
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFP--------------GADGVAGPKGPAGERGSPGPA 517
Query: 131 AGVRAPGHSSRP 142
+PG + RP
Sbjct: 518 GPKGSPGEAGRP 529
Score = 29.6 bits (65), Expect = 1.5
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP G G +G G R P + AP G A APG A
Sbjct: 668 GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA----GAPGAPGSQGA 723
Query: 136 PGHSSRPRTQSAA 148
PG P + AA
Sbjct: 724 PGLQGMPGERGAA 736
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GP GPPG+ G G P P ++ R PA A P G R
Sbjct: 1036 RGETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGP----------AGPVGPVGAR 1084
Query: 135 APGHSSRPRTQSAAT 149
P PR T
Sbjct: 1085 GPAGPQGPRGDKGET 1099
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGC-----APRVRAAPGRA 130
G +GP GPPGS G G R S AP + G P R G A
Sbjct: 1115 GLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDA 1174
Query: 131 AGVRAPGHSSRP 142
V PG P
Sbjct: 1175 GPVGPPGPPGPP 1186
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G QGPPG G G P + + AP AP ++ PG
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG----APGLQGMPGERGAAGL 738
Query: 136 PG 137
PG
Sbjct: 739 PG 740
Score = 28.5 bits (62), Expect = 3.3
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 75 RGCEGPQGPPGSQGLTG--GRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAG 132
RG GP GPPG G G G P P T R AP + G PG A
Sbjct: 763 RGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR--GAPGDRGEPG-------PPGPAGF 813
Query: 133 VRAPGHSSRP 142
PG +P
Sbjct: 814 AGPPGADGQP 823
Score = 28.5 bits (62), Expect = 3.3
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G +GPPG G G P R + +P R G A R G A A
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPG-AKGDRGETGPAGPPGA 1047
Query: 136 PGHSSRP 142
PG P
Sbjct: 1048 PGAPGAP 1054
Score = 28.1 bits (61), Expect = 4.3
Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRR----TRTRSGAAPARSADCGCA-----PRVRA 125
RG GP G PG QG G P P R G P ++ D G A P R
Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPG-PPGKNGDDGEAGKPGRPGERG 245
Query: 126 APGRAAGVRAPGHSSRP 142
PG PG + P
Sbjct: 246 PPGPQGARGLPGTAGLP 262
Score = 28.1 bits (61), Expect = 4.3
Identities = 34/134 (25%), Positives = 39/134 (29%), Gaps = 43/134 (32%)
Query: 75 RGCEGPQGPPGSQGL---------------------------TGGRWTPRFPDRRTRTRS 107
RG +GP G PG QGL +G R FP R +
Sbjct: 631 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER-GVQG 689
Query: 108 GAAPARSADCGCAPRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWRRR 167
PA AP A G A APG P Q R
Sbjct: 690 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP---------------GERG 734
Query: 168 ASGLPRPSEHRSSS 181
A+GLP P R +
Sbjct: 735 AAGLPGPKGDRGDA 748
Score = 27.7 bits (60), Expect = 5.6
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
RG GPQGP G G G P P + T + P G P G+
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQG-PPGPAGEEGKRGARG 473
Query: 135 APGHSSRP 142
PG + P
Sbjct: 474 EPGPTGLP 481
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFP 99
RG GP GPPG G+ G P P
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPP 144
Score = 27.3 bits (59), Expect = 7.3
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 76 GCEGPQGPPGSQGLTG--GRWTPRFP-----DRRTRTRSG-AAPARSADCGCAPRVRAAP 127
G GP GPPG G G G P+ P + R G PA +A P P
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 128 GRAAGVRAPGHSSRP 142
G APG + P
Sbjct: 395 GAKGANGAPGIAGAP 409
Score = 26.9 bits (58), Expect = 9.6
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G G QG PG QG+ G R P + G A + AD +P G +
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPG--PKGDRGDAGPKGAD--GSPGKDGVRGLTGPIGP 771
Query: 136 PGHSSRPRTQSAATWTARVRPERSVARRWRRRASGLPRPS 175
PG + P + + + P + R G P P+
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPA 811
Score = 26.9 bits (58), Expect = 9.6
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVR 134
+G GP GP G G G P + S P + G A RV PG +
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV-GPPGPSGNAG 893
Query: 135 APG 137
PG
Sbjct: 894 PPG 896
Score = 26.9 bits (58), Expect = 9.6
Identities = 29/104 (27%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 76 GCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCAPRVRAAPGRAAGVRA 135
G GP GPPG G GG+ R T P G PG A +
Sbjct: 890 GNAGPPGPPGPAGKEGGK------GPRGETGPAGRPGEVGPPG-------PPGPAGEKGS 936
Query: 136 PGHSSRPRTQSAATWTARVRPERSV----ARRWRRRASGLPRPS 175
PG + P + +R V +R R GLP PS
Sbjct: 937 PG-ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 979
Score = 26.9 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 75 RGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCG-----CAPRVRAAPGR 129
RG GP GPPG G G P +P D G P APG
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053
Query: 130 AAGVRAPGHS 139
V G S
Sbjct: 1054 PGPVGPAGKS 1063
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 32.7 bits (73), Expect = 0.17
Identities = 31/115 (26%), Positives = 34/115 (29%), Gaps = 16/115 (13%)
Query: 74 GRGCEGPQGPPGSQGLTGGRWTPRFPD---RRTRTRSGAAPARSADCGCA-------PRV 123
G G EG Q G GL PR P R R G R A C C PR
Sbjct: 107 GEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRR 166
Query: 124 RAAPGRAAGVRAP------GHSSRPRTQSAATWTARVRPERSVARRWRRRASGLP 172
GR + + P G+ P S W RR R P
Sbjct: 167 LRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
>gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo
sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 106 RSGAAPARSADCGCAPRVRAAPGRAAGVRAPGHSSRPRTQSAATWTARVRPERSVARRWR 165
R + PARS CG P R AP GH + P +AA P W
Sbjct: 109 RPPSGPARSWACGARPPWRLAPA--------GHPATPVAAAAAGSATSPAPPLRAGSHWS 160
Query: 166 R----RASGLP 172
R ASGLP
Sbjct: 161 REGMKNASGLP 171
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,943,071
Number of Sequences: 37866
Number of extensions: 457582
Number of successful extensions: 6773
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 2328
Number of HSP's gapped (non-prelim): 4075
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.