Guide to the Human Genome
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Name: LOC100292951 Sequence: fasta or formatted (181aa) NCBI GI: 239757126
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         19           2
 C cysteine            3.3          6           1
 D aspartate           1.7          3           1
 E glutamate           4.4          8           2
 F phenylalanine       2.8          5           1
 G glycine            11.0         20           2
 H histidine           2.8          5           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            12.7         23           3
 M methionine          1.1          2           1
 N asparagine          1.7          3           1
 P proline            10.5         19           2
 Q glutamine           4.4          8           1
 R arginine           14.4         26           3
 S serine              7.7         14           3
 T threonine           4.4          8           1
 V valine              4.4          8           1
 W tryptophan          1.7          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291185          1.000   PREDICTED: hypothetical protein XP_002347942 
LOC100288364          1.000   PREDICTED: hypothetical protein XP_002344288 
LOC440829             0.040   PREDICTED: transmembrane protein 46-like 
FLJ37078              0.040   hypothetical protein LOC222183 
SRRM2                 0.034   splicing coactivator subunit SRm300 
LOC100291835          0.034   PREDICTED: hypothetical protein XP_002346266 
COL3A1                0.031   collagen type III alpha 1 preproprotein 
LOC100290780          0.031   PREDICTED: hypothetical protein XP_002348295 
COL7A1                0.028   alpha 1 type VII collagen precursor 
COL2A1                0.028   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.028   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A4                0.028   alpha 4 type IV collagen precursor 
FCN3                  0.028   ficolin 3 isoform 1 precursor 
LOC339192             0.028   PREDICTED: hypothetical protein 
LOC100127891          0.026   PREDICTED: hypothetical protein 
COL22A1               0.026   collagen, type XXII, alpha 1 
COL5A2                0.026   alpha 2 type V collagen preproprotein 
COL8A2                0.026   collagen, type VIII, alpha 2 
COL4A2                0.026   alpha 2 type IV collagen preproprotein 
LOC283999             0.023   hypothetical protein LOC283999 
RASSF5                0.023   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.023   Ras association (RalGDS/AF-6) domain family 5 isofor...
FCN3                  0.023   ficolin 3 isoform 2 precursor 
COL4A5                0.023   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.023   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.023   type IV collagen alpha 5 isoform 3 precursor 
COL1A1                0.023   alpha 1 type I collagen preproprotein 
LOC729417             0.023   PREDICTED: hypothetical protein 
LOC100291594          0.023   PREDICTED: hypothetical protein XP_002345692 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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