Guide to the Human Genome
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Name: FCN3 Sequence: fasta or formatted (288aa) NCBI GI: 27754778
Description:

ficolin 3 isoform 2 precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [299aa] ficolin 3 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         20           3
 C cysteine            2.8          8           1
 D aspartate           4.2         12           1
 E glutamate           5.9         17           1
 F phenylalanine       3.8         11           2
 G glycine            12.8         37           3
 H histidine           3.5         10           1
 I isoleucine          1.0          3           1
 K lysine              2.4          7           1
 L leucine            11.5         33           4
 M methionine          1.7          5           2
 N asparagine          3.8         11           1
 P proline             7.6         22           2
 Q glutamine           3.1          9           1
 R arginine            6.6         19           2
 S serine              8.0         23           2
 T threonine           3.1          9           2
 V valine              4.2         12           2
 W tryptophan          3.5         10           2
 Y tyrosine            3.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ficolin 3 isoform 2 precursor 
FCN3                  0.985   ficolin 3 isoform 1 precursor 
FCN2                  0.440   ficolin 2 isoform a precursor 
FCN2                  0.423   ficolin 2 isoform b precursor 
FCN1                  0.421   ficolin 1 precursor 
TNR                   0.304   tenascin R 
MFAP4                 0.291   microfibrillar-associated protein 4 
ANGPTL2               0.281   angiopoietin-like 2 precursor 
ANGPTL6               0.279   angiopoietin-like 6 
FIBCD1                0.274   fibrinogen C domain containing 1 
FIBCD1                0.274   fibrinogen C domain containing 1 
TNC                   0.271   tenascin C precursor 
ANGPTL1               0.259   angiopoietin-like 1 precursor 
TNN                   0.256   tenascin N 
TNXB                  0.253   tenascin XB isoform 2 
TNXB                  0.253   tenascin XB isoform 1 precursor 
ANGPT2                0.237   angiopoietin 2 isoform c precursor 
ANGPT2                0.237   angiopoietin 2 isoform b precursor 
ANGPT2                0.237   angiopoietin 2 isoform a precursor 
ANGPTL7               0.237   angiopoietin-like 7 
ANGPT1                0.236   angiopoietin 1 
FGL1                  0.224   fibrinogen-like 1 precursor 
FGL1                  0.224   fibrinogen-like 1 precursor 
FGL1                  0.224   fibrinogen-like 1 precursor 
FGL1                  0.224   fibrinogen-like 1 precursor 
FGL2                  0.222   fibrinogen-like 2 precursor 
FGA                   0.221   fibrinogen, alpha polypeptide isoform alpha-E preprop...
ANGPT4                0.219   angiopoietin 4 
FGB                   0.217   fibrinogen, beta chain preproprotein 
FGG                   0.204   fibrinogen, gamma chain isoform gamma-B precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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