Guide to the Human Genome
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Name: RASSF5 Sequence: fasta or formatted (418aa) NCBI GI: 32996731
Description:

Ras association (RalGDS/AF-6) domain family 5 isoform A

Referenced in:

Ras

Other entries for this name:
alt prot [336aa] Ras association (RalGDS/AF-6) domain family 5 isoform B
alt prot [265aa] Ras association (RalGDS/AF-6) domain family 5 isoform C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         25           2
 C cysteine            2.6         11           1
 D aspartate           4.5         19           1
 E glutamate           7.4         31           2
 F phenylalanine       3.3         14           1
 G glycine             5.7         24           2
 H histidine           1.2          5           1
 I isoleucine          4.1         17           1
 K lysine              6.0         25           2
 L leucine            11.0         46           3
 M methionine          1.0          4           1
 N asparagine          2.2          9           1
 P proline            10.5         44           5
 Q glutamine           6.5         27           2
 R arginine            9.3         39           3
 S serine              6.2         26           2
 T threonine           5.0         21           3
 V valine              5.0         21           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association (RalGDS/AF-6) domain family 5 isofor... 
RASSF5                0.793   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.513   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF1                0.303   Ras association domain family 1 isoform A 
RASSF1                0.296   Ras association domain family 1 isoform D 
RASSF1                0.242   Ras association domain family 1 isoform C 
RASSF1                0.225   Ras association domain family 1 isoform B 
RASSF3                0.189   Ras association (RalGDS/AF-6) domain family member 3...
RASSF2                0.058   Ras association domain family 2 
RASSF2                0.058   Ras association domain family 2 
RASSF4                0.044   Ras association domain family 4 
RASSF6                0.038   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.038   Ras association (RalGDS/AF-6) domain family 6 isofor...
LOC100292845          0.025   PREDICTED: hypothetical protein 
LOC100289230          0.025   PREDICTED: hypothetical protein XP_002342600 
MLLT4                 0.024   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.024   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.024   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC100127891          0.024   PREDICTED: hypothetical protein 
GGN                   0.023   gametogenetin 
CDC2L5                0.022   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.022   cell division cycle 2-like 5 isoform 2 
PRKCZ                 0.021   protein kinase C, zeta isoform 1 
PRKCI                 0.021   protein kinase C, iota 
PRKD2                 0.021   protein kinase D2 isoform B 
PRKD2                 0.021   protein kinase D2 isoform A 
PRKD2                 0.021   protein kinase D2 isoform A 
PRKD2                 0.021   protein kinase D2 isoform A 
RASGRP4               0.021   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.021   RAS guanyl releasing protein 4 isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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