Guide to the Human Genome
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Search of human proteins with 239756748

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]          215   7e-57
gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens]          215   7e-57
gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens]          215   7e-57
gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens]          211   1e-55
gi|4557701 keratin 17 [Homo sapiens]                                   51   2e-07
gi|15431310 keratin 14 [Homo sapiens]                                  49   7e-07
gi|24234699 keratin 19 [Homo sapiens]                                  47   2e-06
gi|195972866 keratin 10 [Homo sapiens]                                 46   6e-06
gi|24430192 keratin 16 [Homo sapiens]                                  45   9e-06
gi|24430190 keratin 15 [Homo sapiens]                                  45   2e-05
gi|131412228 keratin 13 isoform b [Homo sapiens]                       44   2e-05
gi|131412225 keratin 13 isoform a [Homo sapiens]                       44   2e-05
gi|4557699 keratin 12 [Homo sapiens]                                   43   5e-05
gi|153945736 keratin 27 [Homo sapiens]                                 43   6e-05
gi|4504927 keratin 36 [Homo sapiens]                                   42   8e-05
gi|31559815 keratin 26 [Homo sapiens]                                  42   1e-04
gi|116488398 keratin 32 [Homo sapiens]                                 42   1e-04
gi|192807292 keratin 24 [Homo sapiens]                                 42   1e-04
gi|55956899 keratin 9 [Homo sapiens]                                   41   2e-04
gi|14917119 keratin 34 [Homo sapiens]                                  41   2e-04
gi|114431246 keratin 25D [Homo sapiens]                                40   3e-04
gi|94538345 keratin 35 [Homo sapiens]                                  40   3e-04
gi|31559829 keratin 25 [Homo sapiens]                                  39   7e-04
gi|125490370 type I hair keratin KA36 [Homo sapiens]                   39   7e-04
gi|148277620 type I hair keratin KA35 [Homo sapiens]                   39   0.001
gi|14917117 keratin 33A [Homo sapiens]                                 39   0.001
gi|10337581 type I hair keratin 3B [Homo sapiens]                      39   0.001
gi|14917115 keratin 31 [Homo sapiens]                                  38   0.001
gi|15431318 keratin 38 [Homo sapiens]                                  35   0.010
gi|55770882 keratin 37 [Homo sapiens]                                  35   0.010

>gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]
          Length = 103

 Score =  215 bits (547), Expect = 7e-57
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
           MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60

Query: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
           NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103


>gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens]
          Length = 103

 Score =  215 bits (547), Expect = 7e-57
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
           MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60

Query: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
           NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103


>gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens]
          Length = 103

 Score =  215 bits (547), Expect = 7e-57
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
           MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60

Query: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
           NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103


>gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens]
          Length = 103

 Score =  211 bits (537), Expect = 1e-55
 Identities = 102/103 (99%), Positives = 102/103 (99%)

Query: 1   MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
           MARKRDTERWMMPTWL MTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1   MARKRDTERWMMPTWLLMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60

Query: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
           NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61  NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103


>gi|4557701 keratin 17 [Homo sapiens]
          Length = 432

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
           EA    L + LD+LTL  A+LEMQ ENLKE+L YLKKNHEE  +A
Sbjct: 184 EADINGLRRVLDELTLARADLEMQIENLKEELAYLKKNHEEEMNA 228


>gi|15431310 keratin 14 [Homo sapiens]
          Length = 472

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
           EA    L + LD+LTL  A+LEMQ E+LKE+L YLKKNHEE  +A
Sbjct: 215 EADINGLRRVLDELTLARADLEMQIESLKEELAYLKKNHEEEMNA 259


>gi|24234699 keratin 19 [Homo sapiens]
          Length = 400

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQG 70
           EA    L + LD+LTL   +LEMQ E LKE+L YLKKNH EE+S+ +G
Sbjct: 180 EADINGLRRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRG 227


>gi|195972866 keratin 10 [Homo sapiens]
          Length = 584

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL  A+LEMQ E+L E+L YLKKNHEE
Sbjct: 249 EADINGLRRVLDELTLTKADLEMQIESLTEELAYLKKNHEE 289


>gi|24430192 keratin 16 [Homo sapiens]
          Length = 473

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 24/41 (58%), Positives = 29/41 (70%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL   +LEMQ E LKE+L YL+KNHEE
Sbjct: 217 EADVNGLRRVLDELTLARTDLEMQIEGLKEELAYLRKNHEE 257


>gi|24430190 keratin 15 [Homo sapiens]
          Length = 456

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL   +LEMQ E L E+L YLKKNHEE
Sbjct: 206 EADINGLRRVLDELTLARTDLEMQIEGLNEELAYLKKNHEE 246


>gi|131412228 keratin 13 isoform b [Homo sapiens]
          Length = 420

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL   +LEMQ E+L E+L Y+KKNHEE
Sbjct: 205 EADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEE 245


>gi|131412225 keratin 13 isoform a [Homo sapiens]
          Length = 458

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL   +LEMQ E+L E+L Y+KKNHEE
Sbjct: 205 EADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEE 245


>gi|4557699 keratin 12 [Homo sapiens]
          Length = 494

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD+LTL   +LEMQ E+L E+L Y+KKNHE+
Sbjct: 229 EADINGLRRVLDELTLTRTDLEMQIESLNEELAYMKKNHED 269


>gi|153945736 keratin 27 [Homo sapiens]
          Length = 459

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
           EA    L + LD+LTL   +LE+Q E L E+L YLKKNHEE   A
Sbjct: 188 EADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKA 232


>gi|4504927 keratin 36 [Homo sapiens]
          Length = 467

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD+LTL  A+LE Q E+LKE+L+ LKKNHEE
Sbjct: 203 LDELTLCKADLEAQVESLKEELMCLKKNHEE 233


>gi|31559815 keratin 26 [Homo sapiens]
          Length = 468

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA +  L + LD+LTL   +LE+Q E L E+L YLKK+HEE
Sbjct: 187 EADTSGLRRVLDELTLCTTDLEIQCETLSEELTYLKKSHEE 227


>gi|116488398 keratin 32 [Homo sapiens]
          Length = 448

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD LTL  A+LE Q E+LKE+L+ LKKNHEE
Sbjct: 206 LDDLTLCKADLEAQVESLKEELMCLKKNHEE 236


>gi|192807292 keratin 24 [Homo sapiens]
          Length = 525

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQGMQQKFTWKQARL 82
           EA    L + LD LT+  ++LEMQ E+  E+L YL+KNH EE+ + QG        +   
Sbjct: 245 EADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNA 304

Query: 83  GPRTSL 88
            P T L
Sbjct: 305 APGTDL 310


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 30  LPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSS 67
           L Q LD LT+  ++LEMQ E L+E+L+ LKKNH+E  S
Sbjct: 260 LRQVLDNLTMEKSDLEMQYETLQEELMALKKNHKEEMS 297


>gi|14917119 keratin 34 [Homo sapiens]
          Length = 436

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD+LTL  ++LE Q E+L+E+L+ LKKNHEE
Sbjct: 208 LDELTLCKSDLESQVESLREELICLKKNHEE 238


>gi|114431246 keratin 25D [Homo sapiens]
          Length = 464

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
           EA    L + LD+LTL   + E+Q E+L E++ YLKKNHEE   A
Sbjct: 190 EADINGLRRVLDELTLCRTDQELQYESLSEEMTYLKKNHEEEMKA 234


>gi|94538345 keratin 35 [Homo sapiens]
          Length = 455

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD LTL  ++LE Q E+LKE+L+ LKKNHEE
Sbjct: 207 LDDLTLCKSDLEAQVESLKEELLCLKKNHEE 237


>gi|31559829 keratin 25 [Homo sapiens]
          Length = 450

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           EA    L + LD++TL   +LE+Q E L E++ YLKKNH+E
Sbjct: 183 EADVNGLRRVLDEITLCRTDLEIQYETLSEEMTYLKKNHKE 223


>gi|125490370 type I hair keratin KA36 [Homo sapiens]
          Length = 431

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           L++LTL  ++LE   E+LKEDL+ LKKNHEE
Sbjct: 199 LEELTLCKSDLEAHVESLKEDLLCLKKNHEE 229


>gi|148277620 type I hair keratin KA35 [Homo sapiens]
          Length = 491

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 24  EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQ 69
           E+ +  L Q L+ LTL  A+LE Q ++LKE+L+ LK NH EE++S Q
Sbjct: 196 ESDANGLKQILNVLTLGKADLEAQVQSLKEELLCLKNNHKEEINSLQ 242


>gi|14917117 keratin 33A [Homo sapiens]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD+LTL  ++LE Q E+LKE+L+ LK+NHE+
Sbjct: 166 LDELTLCRSDLEAQVESLKEELLCLKQNHEQ 196


>gi|10337581 type I hair keratin 3B [Homo sapiens]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD+LTL  ++LE Q E+LKE+L+ LK+NHE+
Sbjct: 166 LDELTLCRSDLEAQMESLKEELLSLKQNHEQ 196


>gi|14917115 keratin 31 [Homo sapiens]
          Length = 416

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD+LTL  ++LE Q E+LKE+L+ LK NHE+
Sbjct: 166 LDELTLCKSDLEAQVESLKEELLCLKSNHEQ 196


>gi|15431318 keratin 38 [Homo sapiens]
          Length = 456

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD  TL  A+LE Q E+LKE+ + LK NHE+
Sbjct: 214 LDDATLAKADLEAQQESLKEEQLSLKSNHEQ 244


>gi|55770882 keratin 37 [Homo sapiens]
          Length = 449

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 34  LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
           LD  TL  A+LE Q E+LKE+ + LK NHE+
Sbjct: 214 LDDATLAKADLEAQQESLKEEQLSLKSNHEQ 244


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,247,828
Number of Sequences: 37866
Number of extensions: 167692
Number of successful extensions: 586
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 73
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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