Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens] 215 7e-57
gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens] 215 7e-57
gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens] 215 7e-57
gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens] 211 1e-55
gi|4557701 keratin 17 [Homo sapiens] 51 2e-07
gi|15431310 keratin 14 [Homo sapiens] 49 7e-07
gi|24234699 keratin 19 [Homo sapiens] 47 2e-06
gi|195972866 keratin 10 [Homo sapiens] 46 6e-06
gi|24430192 keratin 16 [Homo sapiens] 45 9e-06
gi|24430190 keratin 15 [Homo sapiens] 45 2e-05
gi|131412228 keratin 13 isoform b [Homo sapiens] 44 2e-05
gi|131412225 keratin 13 isoform a [Homo sapiens] 44 2e-05
gi|4557699 keratin 12 [Homo sapiens] 43 5e-05
gi|153945736 keratin 27 [Homo sapiens] 43 6e-05
gi|4504927 keratin 36 [Homo sapiens] 42 8e-05
gi|31559815 keratin 26 [Homo sapiens] 42 1e-04
gi|116488398 keratin 32 [Homo sapiens] 42 1e-04
gi|192807292 keratin 24 [Homo sapiens] 42 1e-04
gi|55956899 keratin 9 [Homo sapiens] 41 2e-04
gi|14917119 keratin 34 [Homo sapiens] 41 2e-04
gi|114431246 keratin 25D [Homo sapiens] 40 3e-04
gi|94538345 keratin 35 [Homo sapiens] 40 3e-04
gi|31559829 keratin 25 [Homo sapiens] 39 7e-04
gi|125490370 type I hair keratin KA36 [Homo sapiens] 39 7e-04
gi|148277620 type I hair keratin KA35 [Homo sapiens] 39 0.001
gi|14917117 keratin 33A [Homo sapiens] 39 0.001
gi|10337581 type I hair keratin 3B [Homo sapiens] 39 0.001
gi|14917115 keratin 31 [Homo sapiens] 38 0.001
gi|15431318 keratin 38 [Homo sapiens] 35 0.010
gi|55770882 keratin 37 [Homo sapiens] 35 0.010
>gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 215 bits (547), Expect = 7e-57
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
Query: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
>gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 215 bits (547), Expect = 7e-57
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
Query: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
>gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 215 bits (547), Expect = 7e-57
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
Query: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
>gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 211 bits (537), Expect = 1e-55
Identities = 102/103 (99%), Positives = 102/103 (99%)
Query: 1 MARKRDTERWMMPTWLPMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
MARKRDTERWMMPTWL MTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK
Sbjct: 1 MARKRDTERWMMPTWLLMTSAPSEAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKK 60
Query: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA
Sbjct: 61 NHEEVSSAQGMQQKFTWKQARLGPRTSLGWAMLPVQFPSFMDA 103
>gi|4557701 keratin 17 [Homo sapiens]
Length = 432
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
EA L + LD+LTL A+LEMQ ENLKE+L YLKKNHEE +A
Sbjct: 184 EADINGLRRVLDELTLARADLEMQIENLKEELAYLKKNHEEEMNA 228
>gi|15431310 keratin 14 [Homo sapiens]
Length = 472
Score = 49.3 bits (116), Expect = 7e-07
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
EA L + LD+LTL A+LEMQ E+LKE+L YLKKNHEE +A
Sbjct: 215 EADINGLRRVLDELTLARADLEMQIESLKEELAYLKKNHEEEMNA 259
>gi|24234699 keratin 19 [Homo sapiens]
Length = 400
Score = 47.4 bits (111), Expect = 2e-06
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQG 70
EA L + LD+LTL +LEMQ E LKE+L YLKKNH EE+S+ +G
Sbjct: 180 EADINGLRRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRG 227
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 46.2 bits (108), Expect = 6e-06
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL A+LEMQ E+L E+L YLKKNHEE
Sbjct: 249 EADINGLRRVLDELTLTKADLEMQIESLTEELAYLKKNHEE 289
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 45.4 bits (106), Expect = 9e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL +LEMQ E LKE+L YL+KNHEE
Sbjct: 217 EADVNGLRRVLDELTLARTDLEMQIEGLKEELAYLRKNHEE 257
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 44.7 bits (104), Expect = 2e-05
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL +LEMQ E L E+L YLKKNHEE
Sbjct: 206 EADINGLRRVLDELTLARTDLEMQIEGLNEELAYLKKNHEE 246
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 44.3 bits (103), Expect = 2e-05
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL +LEMQ E+L E+L Y+KKNHEE
Sbjct: 205 EADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEE 245
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 44.3 bits (103), Expect = 2e-05
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL +LEMQ E+L E+L Y+KKNHEE
Sbjct: 205 EADINGLRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEE 245
>gi|4557699 keratin 12 [Homo sapiens]
Length = 494
Score = 43.1 bits (100), Expect = 5e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD+LTL +LEMQ E+L E+L Y+KKNHE+
Sbjct: 229 EADINGLRRVLDELTLTRTDLEMQIESLNEELAYMKKNHED 269
>gi|153945736 keratin 27 [Homo sapiens]
Length = 459
Score = 42.7 bits (99), Expect = 6e-05
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
EA L + LD+LTL +LE+Q E L E+L YLKKNHEE A
Sbjct: 188 EADINGLRRVLDELTLCRTDLEIQLETLSEELAYLKKNHEEEMKA 232
>gi|4504927 keratin 36 [Homo sapiens]
Length = 467
Score = 42.4 bits (98), Expect = 8e-05
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD+LTL A+LE Q E+LKE+L+ LKKNHEE
Sbjct: 203 LDELTLCKADLEAQVESLKEELMCLKKNHEE 233
>gi|31559815 keratin 26 [Homo sapiens]
Length = 468
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA + L + LD+LTL +LE+Q E L E+L YLKK+HEE
Sbjct: 187 EADTSGLRRVLDELTLCTTDLEIQCETLSEELTYLKKSHEE 227
>gi|116488398 keratin 32 [Homo sapiens]
Length = 448
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD LTL A+LE Q E+LKE+L+ LKKNHEE
Sbjct: 206 LDDLTLCKADLEAQVESLKEELMCLKKNHEE 236
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 41.6 bits (96), Expect = 1e-04
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQGMQQKFTWKQARL 82
EA L + LD LT+ ++LEMQ E+ E+L YL+KNH EE+ + QG +
Sbjct: 245 EADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNA 304
Query: 83 GPRTSL 88
P T L
Sbjct: 305 APGTDL 310
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 30 LPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSS 67
L Q LD LT+ ++LEMQ E L+E+L+ LKKNH+E S
Sbjct: 260 LRQVLDNLTMEKSDLEMQYETLQEELMALKKNHKEEMS 297
>gi|14917119 keratin 34 [Homo sapiens]
Length = 436
Score = 40.8 bits (94), Expect = 2e-04
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD+LTL ++LE Q E+L+E+L+ LKKNHEE
Sbjct: 208 LDELTLCKSDLESQVESLREELICLKKNHEE 238
>gi|114431246 keratin 25D [Homo sapiens]
Length = 464
Score = 40.4 bits (93), Expect = 3e-04
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEEVSSA 68
EA L + LD+LTL + E+Q E+L E++ YLKKNHEE A
Sbjct: 190 EADINGLRRVLDELTLCRTDQELQYESLSEEMTYLKKNHEEEMKA 234
>gi|94538345 keratin 35 [Homo sapiens]
Length = 455
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD LTL ++LE Q E+LKE+L+ LKKNHEE
Sbjct: 207 LDDLTLCKSDLEAQVESLKEELLCLKKNHEE 237
>gi|31559829 keratin 25 [Homo sapiens]
Length = 450
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
EA L + LD++TL +LE+Q E L E++ YLKKNH+E
Sbjct: 183 EADVNGLRRVLDEITLCRTDLEIQYETLSEEMTYLKKNHKE 223
>gi|125490370 type I hair keratin KA36 [Homo sapiens]
Length = 431
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
L++LTL ++LE E+LKEDL+ LKKNHEE
Sbjct: 199 LEELTLCKSDLEAHVESLKEDLLCLKKNHEE 229
>gi|148277620 type I hair keratin KA35 [Homo sapiens]
Length = 491
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLVYLKKNH-EEVSSAQ 69
E+ + L Q L+ LTL A+LE Q ++LKE+L+ LK NH EE++S Q
Sbjct: 196 ESDANGLKQILNVLTLGKADLEAQVQSLKEELLCLKNNHKEEINSLQ 242
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD+LTL ++LE Q E+LKE+L+ LK+NHE+
Sbjct: 166 LDELTLCRSDLEAQVESLKEELLCLKQNHEQ 196
>gi|10337581 type I hair keratin 3B [Homo sapiens]
Length = 404
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD+LTL ++LE Q E+LKE+L+ LK+NHE+
Sbjct: 166 LDELTLCRSDLEAQMESLKEELLSLKQNHEQ 196
>gi|14917115 keratin 31 [Homo sapiens]
Length = 416
Score = 38.1 bits (87), Expect = 0.001
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD+LTL ++LE Q E+LKE+L+ LK NHE+
Sbjct: 166 LDELTLCKSDLEAQVESLKEELLCLKSNHEQ 196
>gi|15431318 keratin 38 [Homo sapiens]
Length = 456
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD TL A+LE Q E+LKE+ + LK NHE+
Sbjct: 214 LDDATLAKADLEAQQESLKEEQLSLKSNHEQ 244
>gi|55770882 keratin 37 [Homo sapiens]
Length = 449
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 34 LDKLTLPGANLEMQPENLKEDLVYLKKNHEE 64
LD TL A+LE Q E+LKE+ + LK NHE+
Sbjct: 214 LDDATLAKADLEAQQESLKEEQLSLKSNHEQ 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,247,828
Number of Sequences: 37866
Number of extensions: 167692
Number of successful extensions: 586
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 73
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.