Guide to the Human Genome
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Name: LOC100129981 Sequence: fasta or formatted (103aa) NCBI GI: 239756748
Description:

PREDICTED: similar to keratin 17

Referenced in:

Keratins

Other entries for this name:
alt prot [103aa] PREDICTED: similar to keratin 17
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8          8           1
 C cysteine            0.0          0           0
 D aspartate           3.9          4           1
 E glutamate           7.8          8           2
 F phenylalanine       2.9          3           1
 G glycine             5.8          6           1
 H histidine           1.0          1           1
 I isoleucine          0.0          0           0
 K lysine              6.8          7           2
 L leucine            12.6         13           1
 M methionine          7.8          8           2
 N asparagine          2.9          3           1
 P proline             8.7          9           1
 Q glutamine           6.8          7           2
 R arginine            4.9          5           1
 S serine              6.8          7           2
 T threonine           5.8          6           1
 V valine              2.9          3           1
 W tryptophan          3.9          4           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to keratin 17 
LOC729445             1.000   PREDICTED: similar to keratin 17 
LOC729242             1.000   PREDICTED: similar to keratin 17 
LOC100129981          0.979   PREDICTED: similar to keratin 17 
KRT17                 0.137   keratin 17 
KRT14                 0.126   keratin 14 
KRT19                 0.116   keratin 19 
KRT10                 0.111   keratin 10 
KRT16                 0.105   keratin 16 
KRT15                 0.105   keratin 15 
KRT13                 0.100   keratin 13 isoform b 
KRT13                 0.100   keratin 13 isoform a 
KRT12                 0.095   keratin 12 
KRT27                 0.095   keratin 27 
KRT36                 0.089   keratin 36 
KRT26                 0.089   keratin 26 
KRT32                 0.089   keratin 32 
KRT24                 0.089   keratin 24 
KRT9                  0.084   keratin 9 
KRT34                 0.084   keratin 34 
KRT28                 0.079   keratin 25D 
KRT35                 0.079   keratin 35 
KRT25                 0.074   keratin 25 
KRT40                 0.074   type I hair keratin KA36 
KRT39                 0.074   type I hair keratin KA35 
KRT33A                0.074   keratin 33A 
KRT33B                0.074   type I hair keratin 3B 
KRT31                 0.068   keratin 31 
KRT38                 0.053   keratin 38 
KRT37                 0.053   keratin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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