Guide to the Human Genome
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Name: LOC100291737 Sequence: fasta or formatted (303aa) NCBI GI: 239756720
Description:

PREDICTED: hypothetical protein XP_002345024

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         29           2
 C cysteine            3.0          9           1
 D aspartate           2.0          6           1
 E glutamate           5.3         16           2
 F phenylalanine       0.7          2           1
 G glycine             9.2         28           2
 H histidine           4.0         12           2
 I isoleucine          2.6          8           1
 K lysine              4.0         12           2
 L leucine            10.9         33           2
 M methionine          1.3          4           1
 N asparagine          1.3          4           1
 P proline             9.6         29           2
 Q glutamine           4.6         14           2
 R arginine           10.6         32           2
 S serine              9.6         29           2
 T threonine           4.6         14           1
 V valine              4.0         12           1
 W tryptophan          2.0          6           2
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345024 
LOC100290757          1.000   PREDICTED: hypothetical protein XP_002347750 
LOC100289291          0.997   PREDICTED: hypothetical protein XP_002343521 
FLJ37078              0.023   hypothetical protein LOC222183 
FLJ33544              0.022   PREDICTED: hypothetical protein 
FLJ33544              0.022   PREDICTED: hypothetical protein 
BSN                   0.022   bassoon protein 
TAL1                  0.022   T-cell acute lymphocytic leukemia 1 
RLTPR                 0.022   RGD motif, leucine rich repeats, tropomodulin domain...
PTPN23                0.020   protein tyrosine phosphatase, non-receptor type 23 [...
HCN2                  0.020   hyperpolarization activated cyclic nucleotide-gated...
CCDC88C               0.018   DVL-binding protein DAPLE 
FLJ33544              0.018   PREDICTED: hypothetical protein 
DISP2                 0.018   dispatched B 
LOC728317             0.015   PREDICTED: hypothetical protein 
LOC728317             0.015   PREDICTED: hypothetical protein 
LOC728317             0.015   PREDICTED: hypothetical protein 
LOC728307             0.015   PREDICTED: hypothetical protein 
SYN1                  0.015   synapsin I isoform Ia 
SYN1                  0.015   synapsin I isoform Ib 
LOC100292378          0.015   PREDICTED: hypothetical protein 
DIDO1                 0.015   death inducer-obliterator 1 isoform c 
DIDO1                 0.015   death inducer-obliterator 1 isoform b 
LOC728431             0.013   PREDICTED: hypothetical protein 
LOC728431             0.013   PREDICTED: hypothetical protein 
LOC728431             0.013   PREDICTED: hypothetical protein 
KDM6B                 0.013   lysine (K)-specific demethylase 6B 
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 
CTBP2                 0.013   C-terminal binding protein 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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